[tag2.1] fixed typo in NEWS

public header will only contains minimal information: major, minor and build version
Prefix has been changed from OPENJPEG to OPJ for consistency
SOVERSION has been removed from header (ABI vs API info)
OPJ_VERSION string has been removed, since it is accessible already (PACKAGE_VERSION)
Fixes issue 342

AUTHORS

@@ -3,8 +3,10 @@ See also the files THANKS and CHANGES
 
 David Janssens designed and implemented the first version of OpenJPEG.
 Kaori Hagihara designed and implemented the first version of OpenJPIP.
-Jerome Fimes implemented the alpha version of OpenJPEG v2.
+Jerome Fimes implemented the alpha version of OpenJPEG 2.0.
 Giuseppe Baruffa added the JPWL functionalities.
+Micka<EFBFBD>l Savinaud implemented the final OpenJPEG 2.0 version based on a big merge between 1.5 version and alpha version of 2.0.
+Mathieu Malaterre participated to the OpenJPEG 2.0 version and improved the libraries and utilities. 
 Yannick Verschueren, 
 Herve Drolon, 
 Francois-Olivier Devaux, 

CMake/FindFCGI.cmake

@@ -1,20 +0,0 @@
-# Look for the header file.
-FIND_PATH(FCGI_INCLUDE_DIR NAMES fastcgi.h)
-
-# Look for the library.
-FIND_LIBRARY(FCGI_LIBRARY NAMES fcgi)
-
-# Handle the QUIETLY and REQUIRED arguments and set FCGI_FOUND to TRUE if all listed variables are TRUE.
-INCLUDE(FindPackageHandleStandardArgs)
-FIND_PACKAGE_HANDLE_STANDARD_ARGS(FCGI DEFAULT_MSG FCGI_LIBRARY FCGI_INCLUDE_DIR)
-
-# Copy the results to the output variables.
-IF(FCGI_FOUND)
-	SET(FCGI_LIBRARIES ${FCGI_LIBRARY})
-	SET(FCGI_INCLUDE_DIRS ${FCGI_INCLUDE_DIR})
-ELSE(FCGI_FOUND)
-	SET(FCGI_LIBRARIES)
-	SET(FCGI_INCLUDE_DIRS)
-ENDIF(FCGI_FOUND)
-
-MARK_AS_ADVANCED(FCGI_INCLUDE_DIRS FCGI_LIBRARIES)

CMake/FindPTHREAD.cmake

@@ -1,20 +0,0 @@
-# Look for the header file.
-FIND_PATH(PTHREAD_INCLUDE_DIR NAMES pthread.h)
-
-# Look for the library.
-FIND_LIBRARY(PTHREAD_LIBRARY NAMES pthread)
-
-# Handle the QUIETLY and REQUIRED arguments and set PTHREAD_FOUND to TRUE if all listed variables are TRUE.
-INCLUDE(FindPackageHandleStandardArgs)
-FIND_PACKAGE_HANDLE_STANDARD_ARGS(PTHREAD DEFAULT_MSG PTHREAD_LIBRARY PTHREAD_INCLUDE_DIR)
-
-# Copy the results to the output variables.
-IF(PTHREAD_FOUND)
-	SET(PTHREAD_LIBRARIES ${PTHREAD_LIBRARY})
-	SET(PTHREAD_INCLUDE_DIRS ${PTHREAD_INCLUDE_DIR})
-ELSE(PTHREAD_FOUND)
-	SET(PTHREAD_LIBRARIES)
-	SET(PTHREAD_INCLUDE_DIRS)
-ENDIF(PTHREAD_FOUND)
-
-MARK_AS_ADVANCED(PTHREAD_INCLUDE_DIRS PTHREAD_LIBRARIES)

CMakeLists.txt

@@ -6,54 +6,75 @@
 # you will eventually like to prefix the library to avoid linking confusion
 # For this purpose you can define a CMake var: OPENJPEG_NAMESPACE to whatever you like
 # e.g.:
-# SET(OPENJPEG_NAMESPACE "GDCMOPENJPEG")
-CMAKE_MINIMUM_REQUIRED(VERSION 2.6)
+# set(OPENJPEG_NAMESPACE "GDCMOPENJPEG")
+cmake_minimum_required(VERSION 2.8.2)
 
-IF(COMMAND CMAKE_POLICY)
-  CMAKE_POLICY(SET CMP0003 NEW)
-ENDIF(COMMAND CMAKE_POLICY)
+if(COMMAND CMAKE_POLICY)
+  cmake_policy(SET CMP0003 NEW)
+endif()
 
-IF(NOT OPENJPEG_NAMESPACE)
-  SET(OPENJPEG_NAMESPACE "OPENJPEG")
-  SET(OPENJPEG_STANDALONE 1)
-ENDIF(NOT OPENJPEG_NAMESPACE)
+if(NOT OPENJPEG_NAMESPACE)
+  set(OPENJPEG_NAMESPACE "OPENJPEG")
+  set(OPENJPEG_STANDALONE 1)
+endif()
 # In all cases:
-STRING(TOLOWER ${OPENJPEG_NAMESPACE} OPENJPEG_LIBRARY_NAME)
+#string(TOLOWER ${OPENJPEG_NAMESPACE} OPENJPEG_LIBRARY_NAME)
+set(OPENJPEG_LIBRARY_NAME openjp2)
 
-PROJECT(${OPENJPEG_NAMESPACE} C)
+project(${OPENJPEG_NAMESPACE} C)
 
 # Do full dependency headers.
-INCLUDE_REGULAR_EXPRESSION("^.*$")
+include_regular_expression("^.*$")
 
 #-----------------------------------------------------------------------------
 # OPENJPEG version number, useful for packaging and doxygen doc:
-SET(OPENJPEG_VERSION_MAJOR 1)
-SET(OPENJPEG_VERSION_MINOR 5)
-SET(OPENJPEG_VERSION_BUILD 0)
-SET(OPENJPEG_VERSION
+set(OPENJPEG_VERSION_MAJOR 2)
+set(OPENJPEG_VERSION_MINOR 1)
+set(OPENJPEG_VERSION_BUILD 0)
+set(OPENJPEG_VERSION
   "${OPENJPEG_VERSION_MAJOR}.${OPENJPEG_VERSION_MINOR}.${OPENJPEG_VERSION_BUILD}")
-SET(PACKAGE_VERSION
+set(PACKAGE_VERSION
   "${OPENJPEG_VERSION_MAJOR}.${OPENJPEG_VERSION_MINOR}.${OPENJPEG_VERSION_BUILD}")
-SET(OPENJPEG_LIBRARY_PROPERTIES
+
+# Because autotools does not support X.Y notation for SOVERSION, we have to use
+# two numbering, one for the openjpeg version and one for openjpeg soversion
+# version | soversion
+#   1.0   |  0
+#   1.1   |  1
+#   1.2   |  2
+#   1.3   |  3
+#   1.4   |  4
+#   1.5   |  5
+#   1.5.1 |  5
+#   2.0   |  6
+#   2.0.1 |  6
+#   2.1   |  7
+# above is the recommendation by the OPJ team. If you really need to override this default,
+# you can specify your own OPENJPEG_SOVERSION at cmake configuration time:
+# cmake -DOPENJPEG_SOVERSION:STRING=42 /path/to/openjpeg
+if(NOT OPENJPEG_SOVERSION)
+  SET(OPENJPEG_SOVERSION 7)
+endif(NOT OPENJPEG_SOVERSION)
+set(OPENJPEG_LIBRARY_PROPERTIES
   VERSION   "${OPENJPEG_VERSION_MAJOR}.${OPENJPEG_VERSION_MINOR}.${OPENJPEG_VERSION_BUILD}"
-  SOVERSION "${OPENJPEG_VERSION_MAJOR}"
+  SOVERSION "${OPENJPEG_SOVERSION}"
 )
 
 # --------------------------------------------------------------------------
 # Path to additional CMake modules
-SET(CMAKE_MODULE_PATH
-    ${CMAKE_SOURCE_DIR}/CMake
+set(CMAKE_MODULE_PATH
+    ${CMAKE_SOURCE_DIR}/cmake
     ${CMAKE_MODULE_PATH})
 
 # --------------------------------------------------------------------------
 # On Visual Studio 8 MS deprecated C. This removes all 1.276E1265 security
 # warnings
-IF(WIN32)
-  IF(NOT BORLAND)
-    IF(NOT CYGWIN)
-      IF(NOT MINGW)
-        IF(NOT ITK_ENABLE_VISUAL_STUDIO_DEPRECATED_C_WARNINGS)
-          ADD_DEFINITIONS(
+if(WIN32)
+  if(NOT BORLAND)
+    if(NOT CYGWIN)
+      if(NOT MINGW)
+        if(NOT ITK_ENABLE_VISUAL_STUDIO_DEPRECATED_C_WARNINGS)
+          add_definitions(
             -D_CRT_FAR_MAPPINGS_NO_DEPRECATE
             -D_CRT_IS_WCTYPE_NO_DEPRECATE
             -D_CRT_MANAGED_FP_NO_DEPRECATE
@@ -65,198 +86,279 @@ IF(WIN32)
             -D_CRT_VCCLRIT_NO_DEPRECATE
             -D_SCL_SECURE_NO_DEPRECATE
             )
-        ENDIF(NOT ITK_ENABLE_VISUAL_STUDIO_DEPRECATED_C_WARNINGS)
-      ENDIF(NOT MINGW)
-    ENDIF(NOT CYGWIN)
-  ENDIF(NOT BORLAND)
-ENDIF(WIN32)
+        endif()
+      endif()
+    endif()
+  endif()
+endif()
 
 
 # --------------------------------------------------------------------------
 # Install directories
+# Build DOCUMENTATION (not in ALL target and only if Doxygen is found)
+option(BUILD_DOC "Build the HTML documentation (with doxygen if available)." OFF)
 
-STRING(TOLOWER ${PROJECT_NAME} projectname)
-SET(OPENJPEG_INSTALL_SUBDIR "${projectname}-${OPENJPEG_VERSION_MAJOR}.${OPENJPEG_VERSION_MINOR}")
+string(TOLOWER ${PROJECT_NAME} projectname)
+set(OPENJPEG_INSTALL_SUBDIR "${projectname}-${OPENJPEG_VERSION_MAJOR}.${OPENJPEG_VERSION_MINOR}")
 
-IF(NOT OPENJPEG_INSTALL_BIN_DIR)
-  SET(OPENJPEG_INSTALL_BIN_DIR "bin")
-ENDIF(NOT OPENJPEG_INSTALL_BIN_DIR)
+if(NOT OPENJPEG_INSTALL_BIN_DIR)
+  set(OPENJPEG_INSTALL_BIN_DIR "bin")
+endif()
 
-IF(NOT OPENJPEG_INSTALL_LIB_DIR)
-  SET(OPENJPEG_INSTALL_LIB_DIR "lib")
-ENDIF(NOT OPENJPEG_INSTALL_LIB_DIR)
+if(NOT OPENJPEG_INSTALL_LIB_DIR)
+  set(OPENJPEG_INSTALL_LIB_DIR "lib")
+endif()
 
-IF(NOT OPENJPEG_INSTALL_SHARE_DIR)
-  SET(OPENJPEG_INSTALL_SHARE_DIR "share")
-ENDIF(NOT OPENJPEG_INSTALL_SHARE_DIR)
+if(NOT OPENJPEG_INSTALL_SHARE_DIR)
+  set(OPENJPEG_INSTALL_SHARE_DIR "share")
+endif()
 
-IF(NOT OPENJPEG_INSTALL_DATA_DIR)
-  SET(OPENJPEG_INSTALL_DATA_DIR "${OPENJPEG_INSTALL_SHARE_DIR}/${OPENJPEG_INSTALL_SUBDIR}")
-ENDIF(NOT OPENJPEG_INSTALL_DATA_DIR)
+if(NOT OPENJPEG_INSTALL_DATA_DIR)
+  set(OPENJPEG_INSTALL_DATA_DIR "${OPENJPEG_INSTALL_SHARE_DIR}/${OPENJPEG_INSTALL_SUBDIR}")
+endif()
 
-IF(NOT OPENJPEG_INSTALL_INCLUDE_DIR)
-  SET(OPENJPEG_INSTALL_INCLUDE_DIR "include/")
-ENDIF(NOT OPENJPEG_INSTALL_INCLUDE_DIR)
+if(NOT OPENJPEG_INSTALL_INCLUDE_DIR)
+  set(OPENJPEG_INSTALL_INCLUDE_DIR "include/${OPENJPEG_INSTALL_SUBDIR}")
+endif()
 
-IF(NOT OPENJPEG_INSTALL_MAN_DIR)
-  SET(OPENJPEG_INSTALL_MAN_DIR "share/man/")
-ENDIF(NOT OPENJPEG_INSTALL_MAN_DIR)
+if(BUILD_DOC)
+if(NOT OPENJPEG_INSTALL_MAN_DIR)
+  set(OPENJPEG_INSTALL_MAN_DIR "share/man/")
+endif()
 
-IF(NOT OPENJPEG_INSTALL_DOC_DIR)
-  SET(OPENJPEG_INSTALL_DOC_DIR "share/doc/${OPENJPEG_INSTALL_SUBDIR}")
-ENDIF(NOT OPENJPEG_INSTALL_DOC_DIR)
+if(NOT OPENJPEG_INSTALL_DOC_DIR)
+  set(OPENJPEG_INSTALL_DOC_DIR "share/doc/${OPENJPEG_INSTALL_SUBDIR}")
+endif()
+endif()
 
-IF(NOT OPENJPEG_INSTALL_PACKAGE_DIR)
-  SET(OPENJPEG_INSTALL_PACKAGE_DIR "${OPENJPEG_INSTALL_SHARE_DIR}/${OPENJPEG_INSTALL_SUBDIR}")
-ENDIF(NOT OPENJPEG_INSTALL_PACKAGE_DIR)
+if(NOT OPENJPEG_INSTALL_JNI_DIR)
+  if(WIN32)
+    set(OPENJPEG_INSTALL_JNI_DIR ${OPENJPEG_INSTALL_BIN_DIR})
+  else()
+    set(OPENJPEG_INSTALL_JNI_DIR ${OPENJPEG_INSTALL_LIB_DIR})
+  endif()
+endif()
+
+if(NOT OPENJPEG_INSTALL_PACKAGE_DIR)
+  # We could install *.cmake files in share/ however those files contains
+  # hardcoded path to libraries on a multi-arch system (fedora/debian) those
+  # path will be different (lib/i386-linux-gnu vs lib/x86_64-linux-gnu)
+  set(OPENJPEG_INSTALL_PACKAGE_DIR "${OPENJPEG_INSTALL_LIB_DIR}/${OPENJPEG_INSTALL_SUBDIR}")
+endif()
 
 #-----------------------------------------------------------------------------
 # Big endian test:
-INCLUDE (${CMAKE_ROOT}/Modules/TestBigEndian.cmake)
+include (${CMAKE_ROOT}/Modules/TestBigEndian.cmake)
 TEST_BIG_ENDIAN(OPJ_BIG_ENDIAN)
 
 #-----------------------------------------------------------------------------
 # Setup file for setting custom ctest vars
-CONFIGURE_FILE(
-  ${CMAKE_SOURCE_DIR}/CMake/CTestCustom.cmake.in
+configure_file(
+  ${CMAKE_SOURCE_DIR}/cmake/CTestCustom.cmake.in
   ${CMAKE_BINARY_DIR}/CTestCustom.cmake
   @ONLY
   )
 
 #-----------------------------------------------------------------------------
 # OpenJPEG build configuration options.
-OPTION(BUILD_SHARED_LIBS "Build OpenJPEG shared library and link executables against it." ON)
-SET (EXECUTABLE_OUTPUT_PATH ${OPENJPEG_BINARY_DIR}/bin CACHE PATH "Single output directory for building all executables.")
-SET (LIBRARY_OUTPUT_PATH ${OPENJPEG_BINARY_DIR}/bin CACHE PATH "Single output directory for building all libraries.")
-MARK_AS_ADVANCED(LIBRARY_OUTPUT_PATH EXECUTABLE_OUTPUT_PATH)
+option(BUILD_SHARED_LIBS "Build OpenJPEG shared library and link executables against it." ON)
+set (EXECUTABLE_OUTPUT_PATH ${OPENJPEG_BINARY_DIR}/bin CACHE PATH "Single output directory for building all executables.")
+set (LIBRARY_OUTPUT_PATH ${OPENJPEG_BINARY_DIR}/bin CACHE PATH "Single output directory for building all libraries.")
+mark_as_advanced(LIBRARY_OUTPUT_PATH EXECUTABLE_OUTPUT_PATH)
 
 #-----------------------------------------------------------------------------
 # configure name mangling to allow multiple libraries to coexist
 # peacefully
-IF(EXISTS ${CMAKE_CURRENT_SOURCE_DIR}/openjpeg_mangle.h.in)
-SET(MANGLE_PREFIX ${OPENJPEG_LIBRARY_NAME})
-CONFIGURE_FILE(${CMAKE_CURRENT_SOURCE_DIR}/openjpeg_mangle.h.in
+if(EXISTS ${CMAKE_CURRENT_SOURCE_DIR}/openjpeg_mangle.h.in)
+set(MANGLE_PREFIX ${OPENJPEG_LIBRARY_NAME})
+configure_file(${CMAKE_CURRENT_SOURCE_DIR}/openjpeg_mangle.h.in
                ${CMAKE_CURRENT_BINARY_DIR}/openjpeg_mangle.h
                @ONLY)
-ENDIF(EXISTS ${CMAKE_CURRENT_SOURCE_DIR}/openjpeg_mangle.h.in)
-
-#-----------------------------------------------------------------------------
-# pkgconfig support
-IF(UNIX)
-  CONFIGURE_FILE(${CMAKE_CURRENT_SOURCE_DIR}/libopenjpeg1.pc.cmake
-    ${CMAKE_CURRENT_BINARY_DIR}/libopenjpeg1.pc @ONLY)
-  INSTALL( FILES  ${CMAKE_CURRENT_BINARY_DIR}/libopenjpeg1.pc DESTINATION
-    ${OPENJPEG_INSTALL_SHARE_DIR}/pkgconfig )
-  INSTALL( CODE "EXECUTE_PROCESS(COMMAND ${CMAKE_COMMAND} -E create_symlink
-  \"libopenjpeg1.pc\"
-  \"\$ENV{DESTDIR}${OPENJPEG_INSTALL_LIB_DIR}/pkgconfig/libopenjpeg.pc\")")
-ENDIF(UNIX)
+endif()
 
 #-----------------------------------------------------------------------------
 # Compiler specific flags:
-IF(CMAKE_COMPILER_IS_GNUCC)
+if(CMAKE_COMPILER_IS_GNUCC)
   # For all builds, make sure openjpeg is std99 compliant:
-  # SET(CMAKE_C_FLAGS "-Wall -std=c99 ${CMAKE_C_FLAGS}") # FIXME: this setting prevented us from setting a coverage build.
+  # set(CMAKE_C_FLAGS "-Wall -std=c99 ${CMAKE_C_FLAGS}") # FIXME: this setting prevented us from setting a coverage build.
   # Do not use ffast-math for all build, it would produce incorrect results, only set for release:
-  SET(CMAKE_C_FLAGS_RELEASE "-ffast-math ${CMAKE_C_FLAGS_RELEASE}")
-ENDIF(CMAKE_COMPILER_IS_GNUCC)
+  set(CMAKE_C_FLAGS_RELEASE "-ffast-math ${CMAKE_C_FLAGS_RELEASE}")
+endif()
 
 #-----------------------------------------------------------------------------
 # opj_config.h generation (1/2)
-INCLUDE (${CMAKE_ROOT}/Modules/CheckIncludeFile.cmake)
+
+# Check if some include files are provided by the system
+include(EnsureFileInclude)
+# These files are mandatory
+ensure_file_include("string.h"   HAVE_STRING_H YES)
+ensure_file_include("memory.h"   HAVE_MEMORY_H YES)
+ensure_file_include("stdlib.h"   HAVE_STDLIB_H YES)
+ensure_file_include("stdio.h"    HAVE_STDIO_H  YES)
+ensure_file_include("math.h"     HAVE_MATH_H   YES)
+ensure_file_include("float.h"    HAVE_FLOAT_H  YES)
+ensure_file_include("time.h"     HAVE_TIME_H   YES)
+ensure_file_include("stdarg.h"   HAVE_STDARG_H YES)
+ensure_file_include("ctype.h"    HAVE_CTYPE_H  YES)
+ensure_file_include("assert.h"   HAVE_ASSERT_H YES)
+
+# For the following files, we provide an alternative, they are not mandatory
+ensure_file_include("stdint.h"   OPJ_HAVE_STDINT_H   NO)
+ensure_file_include("inttypes.h" OPJ_HAVE_INTTYPES_H NO)
+
+# why check this one ? for openjpip ?
+include (${CMAKE_ROOT}/Modules/CheckIncludeFile.cmake)
 CHECK_INCLUDE_FILE("strings.h"      HAVE_STRINGS_H)
-CHECK_INCLUDE_FILE("inttypes.h"     HAVE_INTTYPES_H)
-CHECK_INCLUDE_FILE("memory.h"       HAVE_MEMORY_H)
-CHECK_INCLUDE_FILE("stdint.h"       HAVE_STDINT_H)
-CHECK_INCLUDE_FILE("stdlib.h"       HAVE_STDLIB_H)
-CHECK_INCLUDE_FILE("string.h"       HAVE_STRING_H)
 CHECK_INCLUDE_FILE("sys/stat.h"     HAVE_SYS_STAT_H)
 CHECK_INCLUDE_FILE("sys/types.h"    HAVE_SYS_TYPES_H)
 CHECK_INCLUDE_FILE("unistd.h"       HAVE_UNISTD_H)
 
+# Enable Large file support
+include(TestLargeFiles)
+OPJ_TEST_LARGE_FILES(OPJ_HAVE_LARGEFILES)
 
 #-----------------------------------------------------------------------------
 # Build Library
-INCLUDE_DIRECTORIES(BEFORE ${OPENJPEG_BINARY_DIR})
-ADD_SUBDIRECTORY(libopenjpeg)
+if(BUILD_JPIP_SERVER)
+  find_package(CURL REQUIRED)
+  find_package(FCGI REQUIRED)
+  find_package(Threads REQUIRED)
+  if(NOT CMAKE_USE_PTHREADS_INIT)
+    message(FATAL_ERROR "Only pthread are supported")
+  endif()
+endif()
+add_subdirectory(src/lib)
 
 #-----------------------------------------------------------------------------
 # Build Applications
-OPTION(BUILD_CODEC "Build the CODEC executables" ON)
-OPTION(BUILD_MJ2 "Build the MJ2 executables." OFF)
-OPTION(BUILD_JPWL "Build the JPWL library and executables" OFF)
-OPTION(BUILD_JPIP "Build the JPIP library and executables." OFF)
-IF(BUILD_JPIP)
-  OPTION(BUILD_JPIP_SERVER "Build the JPIP server." OFF)
-ENDIF(BUILD_JPIP)
-OPTION(BUILD_VIEWER "Build the OPJViewer executable (C++)" OFF)
-OPTION(BUILD_JAVA "Build the openjpeg jar (Java)" OFF)
-MARK_AS_ADVANCED(BUILD_VIEWER)
-MARK_AS_ADVANCED(BUILD_JAVA)
+option(BUILD_CODEC "Build the CODEC executables" ON)
+option(BUILD_MJ2 "Build the MJ2 executables." OFF)
+option(BUILD_JPWL "Build the JPWL library and executables" OFF)
+option(BUILD_JPIP "Build the JPIP library and executables." OFF)
+if(BUILD_JPIP)
+  option(BUILD_JPIP_SERVER "Build the JPIP server." OFF)
+endif()
+option(BUILD_VIEWER "Build the OPJViewer executable (C++)" OFF)
+option(BUILD_JAVA "Build the openjpeg jar (Java)" OFF)
+option(BUILD_JP3D "Build the JP3D comp" OFF)
+mark_as_advanced(BUILD_VIEWER)
+mark_as_advanced(BUILD_JAVA)
+mark_as_advanced(BUILD_JP3D)
 
-IF(BUILD_CODEC OR BUILD_MJ2)
+if(BUILD_CODEC OR BUILD_MJ2)
   # OFF: It will only build 3rd party libs if they are not found on the system
   # ON: 3rd party libs will ALWAYS be build, and used
-  OPTION(BUILD_THIRDPARTY "Build the thirdparty executables if it is needed" OFF)
-  ADD_SUBDIRECTORY(thirdparty)
-  ADD_SUBDIRECTORY(applications)
-ENDIF (BUILD_CODEC OR BUILD_MJ2)
+  option(BUILD_THIRDPARTY "Build the thirdparty executables if it is needed" OFF)
+  add_subdirectory(thirdparty)
+  add_subdirectory(src/bin)
+endif ()
+add_subdirectory(wrapping)
 
 #-----------------------------------------------------------------------------
 # opj_config.h generation (2/2)
-CONFIGURE_FILE("${OPENJPEG_SOURCE_DIR}/opj_config.h.cmake.in"
- "${OPENJPEG_BINARY_DIR}/opj_config.h"
+configure_file(
+ ${CMAKE_CURRENT_SOURCE_DIR}/src/lib/openjp2/opj_config.h.cmake.in
+ ${CMAKE_CURRENT_BINARY_DIR}/src/lib/openjp2/opj_config.h
+ @ONLY
+ )
+ 
+ configure_file(
+ ${CMAKE_CURRENT_SOURCE_DIR}/src/lib/openjp2/opj_config_private.h.cmake.in
+ ${CMAKE_CURRENT_BINARY_DIR}/src/lib/openjp2/opj_config_private.h
  @ONLY
  )
 
 #-----------------------------------------------------------------------------
-# Build DOCUMENTATION (not in ALL target and only if Doxygen is found)
-OPTION(BUILD_DOC "Build the HTML documentation (with doxygen if available)." OFF)
-IF(BUILD_DOC)
-    ADD_SUBDIRECTORY(doc)
-ENDIF(BUILD_DOC)
+# build documentation in doc subdir:
+if(BUILD_DOC)
+  add_subdirectory(doc)
+endif()
 
 #-----------------------------------------------------------------------------
 # Buld Testing
-OPTION(BUILD_TESTING "Build the tests." OFF)
-IF(BUILD_TESTING)
-  IF(BUILD_CODEC)
-    ENABLE_TESTING()
-    INCLUDE(CTest)
-  
+option(BUILD_TESTING "Build the tests." OFF)
+if(BUILD_TESTING)
+  if(BUILD_CODEC)
+    enable_testing()
+    include(CTest)
+
     # Search openjpeg data needed for the tests
     # They could be found via svn on the OpenJPEG google code project
-    # svn checkout http://openjpeg.googlecode.com/svn/data (about 70 Mo) 
-    FIND_PATH(OPJ_DATA_ROOT README-OPJ-Data
-      PATHS
-      $ENV{OPJ_DATA_ROOT}
-      ${CMAKE_SOURCE_DIR}/../data
+    # svn checkout http://openjpeg.googlecode.com/svn/data (about 70 Mo)
+    find_path(OPJ_DATA_ROOT README-OPJ-Data
+      PATHS $ENV{OPJ_DATA_ROOT} ${CMAKE_SOURCE_DIR}/../data
+      NO_DEFAULT_PATH NO_CMAKE_FIND_ROOT_PATH
       )
 
     # Add repository where to find tests
-    ADD_SUBDIRECTORY(tests)
-    
-  ELSE(BUILD_CODEC)
+    add_subdirectory(tests)
+
+  else()
     message(FATAL_ERROR "You need build codec to run the tests")
-  ENDIF(BUILD_CODEC)
-ENDIF(BUILD_TESTING)
+  endif()
+endif()
 
 #-----------------------------------------------------------------------------
 # install all targets referenced as OPENJPEGTargets
-INSTALL(EXPORT OpenJPEGTargets DESTINATION ${OPENJPEG_INSTALL_PACKAGE_DIR})
-CONFIGURE_FILE( ${OPENJPEG_SOURCE_DIR}/CMake/OpenJPEGConfig.cmake.in
+install(EXPORT OpenJPEGTargets DESTINATION ${OPENJPEG_INSTALL_PACKAGE_DIR})
+configure_file( ${OPENJPEG_SOURCE_DIR}/cmake/OpenJPEGConfig.cmake.in
   ${OPENJPEG_BINARY_DIR}/OpenJPEGConfig.cmake
   @ONLY
 )
-INSTALL( FILES ${OPENJPEG_BINARY_DIR}/OpenJPEGConfig.cmake
+install( FILES ${OPENJPEG_BINARY_DIR}/OpenJPEGConfig.cmake
   DESTINATION ${OPENJPEG_INSTALL_PACKAGE_DIR}
 )
 
 #-----------------------------------------------------------------------------
 # install CHANGES and LICENSE
-INSTALL(
-  FILES       CHANGES 
-              LICENSE
-  DESTINATION ${OPENJPEG_INSTALL_DOC_DIR})
+if(BUILD_DOC)
+if(EXISTS ${OPENJPEG_SOURCE_DIR}/CHANGES)
+  install(FILES CHANGES DESTINATION ${OPENJPEG_INSTALL_DOC_DIR})
+endif()
 
-INCLUDE (CMake/OpenJPEGCPack.cmake)
+install(FILES LICENSE DESTINATION ${OPENJPEG_INSTALL_DOC_DIR})
+endif()
+
+include (cmake/OpenJPEGCPack.cmake)
+
+#-----------------------------------------------------------------------------
+# pkgconfig support
+# enabled by default on Unix, disabled by default on other platforms
+if(UNIX)
+  option(BUILD_PKGCONFIG_FILES "Build and install pkg-config files" ON)
+else()
+  option(BUILD_PKGCONFIG_FILES "Build and install pkg-config files" OFF)
+endif()
+if(BUILD_PKGCONFIG_FILES)
+  # install in lib and not share (see multi-arch note above)
+  configure_file(${CMAKE_CURRENT_SOURCE_DIR}/src/lib/openjp2/libopenjp2.pc.cmake.in
+    ${CMAKE_CURRENT_BINARY_DIR}/libopenjp2.pc @ONLY)
+  install( FILES  ${CMAKE_CURRENT_BINARY_DIR}/libopenjp2.pc DESTINATION
+    ${OPENJPEG_INSTALL_LIB_DIR}/pkgconfig )
+#
+  if(BUILD_JPWL)
+  # install in lib and not share (see multi-arch note above)
+  configure_file(${CMAKE_CURRENT_SOURCE_DIR}/src/lib/openjpwl/libopenjpwl.pc.cmake.in
+    ${CMAKE_CURRENT_BINARY_DIR}/libopenjpwl.pc @ONLY)
+  install( FILES  ${CMAKE_CURRENT_BINARY_DIR}/libopenjpwl.pc DESTINATION
+    ${OPENJPEG_INSTALL_LIB_DIR}/pkgconfig )
+  endif()
+#
+  if(BUILD_JPIP)
+  # install in lib and not share (see multi-arch note above)
+  configure_file(${CMAKE_CURRENT_SOURCE_DIR}/src/lib/openjpip/libopenjpip.pc.cmake.in
+    ${CMAKE_CURRENT_BINARY_DIR}/libopenjpip.pc @ONLY)
+  install( FILES  ${CMAKE_CURRENT_BINARY_DIR}/libopenjpip.pc DESTINATION
+    ${OPENJPEG_INSTALL_LIB_DIR}/pkgconfig )
+  endif()
+#
+  if(BUILD_JP3D)
+  # install in lib and not share (see multi-arch note above)
+  configure_file(${CMAKE_CURRENT_SOURCE_DIR}/src/lib/openjp3d/libopenjp3d.pc.cmake.in
+    ${CMAKE_CURRENT_BINARY_DIR}/libopenjp3d.pc @ONLY)
+  install( FILES  ${CMAKE_CURRENT_BINARY_DIR}/libopenjp3d.pc DESTINATION
+    ${OPENJPEG_INSTALL_LIB_DIR}/pkgconfig )
+  endif()
+endif()
+
+#-----------------------------------------------------------------------------

INSTALL

@@ -2,63 +2,10 @@
 How to build and install openjpeg binaries
 ==========================================
 
-UNIX/LINUX similar systems
+UNIX/LINUX/MacOSX/Windows systems
 --------------------------
 
-1) Using autotools
-
-It is highly recommended that pkg-config is installed. If needed, you have to
-properly set the environment variable PKG_CONFIG_PATH so that the .pc files
-are found.
-
-To build from top-level directory, you can simply type: 
-  ./bootstrap.sh
-  ./configure
-  make
-
-To keep all build files in a separate directory, you can type instead: 
-  ./bootstrap.sh
-  mkdir build
-  cd build
-  ../configure
-  make
-
-To install:
-  sudo make install
-  
-To clean:
-  make clean
-  make distclean
-
-To build doc (requires 'doxygen' to be found on your system):
-(this will create an html directory in TOP_LEVEL/doc)
-  make doc
-
-Main './configure' options (type './configure --help' for more details)
-  '--enable-mj2'
-  '--enable-jpwl'
-  '--enable-jpip'
-  '--prefix=/path/to/install/directory' (example : '--prefix=$PWD/installed')
-  '--enable-debug' (default : disabled)
-
-You can also specify your own CFLAGS and LDFLAGS with (for example):
-  CFLAGS="-O3 -pipe" LDFLAGS="-Wl,-s" ./configure
-
-The (optional) dependencies of some binaries are libpng, libtiff, libcms 1 or 2
-and FastCGI. Only libtiff and FastCGI have no .pc file. There should be some
-automatic detection if they are installed in /usr, /usr/local or /opt/local.
-Otherwise, you can tune their detection (as well as for libpng and libcms1 or 2
-too) with the environment variables:
-
-TIFF_CFLAGS
-TIFF_LIBS
-FCGI_CFLAGS
-FCGI_LIBS
-
-See './configure --help' output for more details.
-
-
-2) Using cmake (see www.cmake.org)
+Using cmake (see www.cmake.org)
 
 Type:
   cmake .
@@ -66,12 +13,13 @@ Type:
 
 If you are root:
   make install
-  make clean
 
-else:
+else if you have sudo power:
   sudo make install
-  make clean
-  
+
+else
+  DESTDIR=$HOME/local make install
+
 To build the Doxygen documentation (Doxygen needs to be found on the system):
 (A 'html' directory is generated in the 'doc' directory)
   make doc
@@ -79,13 +27,19 @@ To build the Doxygen documentation (Doxygen needs to be found on the system):
 Binaries are located in the 'bin' directory.
 
 Main available cmake flags:
-* To specify the install path: '-DCMAKE_INSTALL_PREFIX=/path'
+* To specify the install path: '-DCMAKE_INSTALL_PREFIX=/path', or use DESTDIR env variable (see above)
 * To build the shared libraries and links the executables against it: '-DBUILD_SHARED_LIBS:bool=on' (default: 'ON')
   Note: when using this option, static libraries are not built and executables are dynamically linked.
 * To build the CODEC executables: '-DBUILD_CODEC:bool=on' (default: 'ON')
+* To build the documentation: '-DBUILD_DOC:bool=on' (default: 'OFF')
 * To build the MJ2 executables: '-DBUILD_MJ2:bool=on' (default: 'OFF')
 * To build the JPWL executables and JPWL library: '-DBUILD_JPWL:bool=on' (default: 'OFF')
 * To build the JPIP library and utilities: '-DBUILD_JPIP:bool=on' (default: 'OFF')
+** To build the JPIP server: '-DBUILD_JPIP_SERVER:bool=on' (default: 'OFF')
+* To build the JP3D library and utilities: '-DBUILD_JP3D:bool=on' (default: 'OFF') (experimental)
+* To build the Java binding: '-DBUILD_JAVA:bool=on' (default: 'OFF') (experimental).
+** to choose which java implementation, you can set your JAVA_HOME env var.
+* To build the wxWidgets/C++ viewer: 'BUILD_VIEWER:BOOL=ON' (default OFF) (experimental)
 * To enable testing (and automatic result upload to http://my.cdash.org/index.php?project=OPENJPEG):
     cmake . -DBUILD_TESTING:BOOL=ON -DOPJ_DATA_ROOT:PATH='path/to/the/data/directory'
     make
@@ -98,7 +52,7 @@ Main available cmake flags:
 MACOSX
 ------
 
-The same building procedures as above (autotools and cmake) work for MACOSX.
+The same building procedures as above work for MACOSX.
 The xcode project file can also be used.
 
 If it does not work, try adding the following flag to the cmake command : 
@@ -107,7 +61,9 @@ If it does not work, try adding the following flag to the cmake command :
 WINDOWS
 -------
 
-If you're using cygwin or MinGW+MSYS, the same procedures as for Unix can be used. 
-
-Otherwise you can use cmake to generate project files for the IDE you are using (VC2010, etc).
+You can use cmake to generate project files for the IDE you are using (VS2010, NMake, etc).
 Type 'cmake --help' for available generators on your platform.
+
+Make sure to build the third party libs (png, zlib ...):
+
+  '-DBUILD_THIRDPARTY:BOOL=ON'

LICENSE

@@ -1,11 +1,19 @@
 /*
- * Copyright (c) 2002-2012, Communications and Remote Sensing Laboratory, Universite catholique de Louvain (UCL), Belgium
- * Copyright (c) 2002-2012, Professor Benoit Macq
- * Copyright (c) 2003-2012, Antonin Descampe
+ * The copyright in this software is being made available under the 2-clauses 
+ * BSD License, included below. This software may be subject to other third 
+ * party and contributor rights, including patent rights, and no such rights
+ * are granted under this license.
+ *
+ * Copyright (c) 2002-2014, Universite catholique de Louvain (UCL), Belgium
+ * Copyright (c) 2002-2014, Professor Benoit Macq
+ * Copyright (c) 2003-2014, Antonin Descampe
  * Copyright (c) 2003-2009, Francois-Olivier Devaux
  * Copyright (c) 2005, Herve Drolon, FreeImage Team
  * Copyright (c) 2002-2003, Yannick Verschueren
  * Copyright (c) 2001-2003, David Janssens
+ * Copyright (c) 2011-2012, Centre National d'Etudes Spatiales (CNES), France 
+ * Copyright (c) 2012, CS Systemes d'Information, France
+ *
  * All rights reserved.
  *
  * Redistribution and use in source and binary forms, with or without

Makefile.am

@@ -1,75 +0,0 @@
-DISTCHECK_CONFIGURE_FLAGS = --enable-jpip=yes --enable-jpip-server=yes --enable-jpwl=yes --enable-mj2=yes
-
-ACLOCAL_AMFLAGS = -I m4
-
-SUBDIRS = libopenjpeg applications doc
-
-pkgconfigdir = $(libdir)/pkgconfig
-pkgconfig_DATA = libopenjpeg1.pc
-
-if WANT_JPWL
-pkgconfig_DATA += libopenjpeg-jpwl.pc
-endif
-
-
-MAINTAINERCLEANFILES = \
-Makefile.in \
-aclocal.m4 \
-config.guess \
-opj_config.h.in \
-opj_config.h.in~ \
-config.sub \
-configure \
-depcomp \
-install-sh \
-ltmain.sh \
-missing
-
-EXTRA_DIST = \
-CMake/CTestCustom.cmake.in \
-CMake/FindFCGI.cmake \
-CMake/FindLCMS2.cmake \
-CMake/FindLCMS.cmake \
-CMake/OpenJPEGConfig.cmake.in \
-CMakeLists.txt \
-CTestConfig.cmake \
-AUTHORS \
-CHANGES \
-INSTALL \
-LICENSE \
-NEWS \
-README \
-THANKS \
-bootstrap.sh \
-libopenjpeg1.pc.cmake \
-libopenjpeg1.pc.in \
-libopenjpeg-jpwl.pc.in \
-opj_config.h.cmake.in \
-m4/opj_check_lib.m4 \
-m4/opj_doxygen.m4 \
-m4/pkg.m4
-
-.PHONY: doc
-
-# Documentation
-
-doc:
-	@echo "entering doc/"
-	@cd doc && make doc
-
-install-data-hook:
-if HAVE_WIN32
-	$(LN_S) -f libopenjpeg1.pc $(DESTDIR)$(pkgconfigdir)/libopenjpeg.pc
-else
-	$(LN_S) -nf libopenjpeg1.pc $(DESTDIR)$(pkgconfigdir)/libopenjpeg.pc
-endif
-	@echo -e " (PC)\t$(pkgconfigdir)/libopenjpeg1.pc" >> $(top_builddir)/report.txt
-	@echo -e " (LN)\t$(pkgconfigdir)/libopenjpeg.pc" >> $(top_builddir)/report.txt
-if WANT_JPWL
-	@echo -e " (PC)\t$(pkgconfigdir)/libopenjpeg-jpwl.pc" >> $(top_builddir)/report.txt
-endif
-	@cat $(top_builddir)/report.txt
-	@rm $(top_builddir)/report.txt
-
-uninstall-hook:
-	rm -f $(DESTDIR)$(pkgconfigdir)/libopenjpeg.pc

NEWS

@@ -2,33 +2,60 @@
 OpenJPEG NEWS - user visible changes
 ====================================
 
-Changes from OpenJPEG 1.4.0 to OpenJPEG 1.5.0
+Changes from OpenJPEG 2.0.0 to OpenJPEG 2.1.0
 ----------------------------------------------
 
 New Features:
 
-    * openjpip: 
-     - complete client-server architecture for remote browsing of jpeg 2000 images. 
-     - located in 'applications/jpip'.
-     - see corresponding README for more details.
+    * Digital Cinema profiles have been fixed and updated
+	* New option to disable MCT if needed
+    * extended RAW support: it is now possible to input raw images
+	  with subsampled color components (422, 420, etc)
+    * New way to deal with profiles
+	  
+API/ABI modifications: (see abi_compat_report in dev-utils/scripts)
 
-API modifications:
-
-    * 'bool' type has been replaced by 'opj_bool' type. 'stdbool.h' is no more required.
+    * Removed deprecated functions 
+	    - opj_stream_create_default_file_stream(FILE*,...)
+        - opj_stream_create_file_stream(FILE*,...)
+        - opj_stream_set_user_data (opj_stream_t* p_stream, void * p_data)
+	* Added 
+        - opj_stream_create_default_file_stream(char*,...)
+        - opj_stream_create_file_stream(char*,...)
+        - opj_stream_destroy(opj_stream_t*)
+        - opj_stream_set_user_data (opj_stream_t* p_stream, void * p_data, 
+            ... opj_stream_free_user_data_fn p_function)
+        - JPEG 2000 profiles and Part-2 extensions defined through '#define'
+    * Changed
+        - 'alpha' field added to 'opj_image_comp' structure
+        - 'OPJ_CLRSPC_EYCC' added to enum COLOR_SPACE
+        - 'OPJ_CLRSPC_CMYK' added to enum COLOR_SPACE
+        - 'OPJ_CODEC_JPP' and 'OPJ_CODEC_JPX' added to CODEC_FORMAT
+          (not yet used in use)
+        - 'max_cs_size' and 'rsiz' fields added to opj_cparameters_t
     
 Misc:
 
-    * added this NEWS file.
-    * improved cmake and autotools build methods.
-    * removed manual makefiles, VS project files and XCode project files.
-    * added a 'thirdparty' directory to contain all dependencies.
-     - These libraries will be build only if there are not found on the system.
-     - Note that libopenjpeg itself does not have any dependency.
-    * changed the directory hierarchy of the whole project. See README files for details.
-    * tests : a complete test suite has been setup.
-     - both JPEG 2000 conformance tests and non-regressions tests are configured.
-     - results are submitted to the OpenJPEG dashboard (http://my.cdash.org/index.php?project=OPENJPEG)
-     - images are located in 'http://openjpeg.googlecode.com/svn/data' folder.
-     - configuration files and utilities are located in 'tests' folder.
-    * OPJViewer re-activated (need wxWidgets)
+    * OpenJPEG is now officialy conformant with JPEG 2000 Part-1
+	  and will soon become official reference software at the 
+	  JPEG committee.
+    * Huge amount of bug fixes. See CHANGES for details.
+
+
+Changes from OpenJPEG 1.5.x to OpenJPEG 2.0.0
+----------------------------------------------
+
+New Features:
+
+    * streaming capabilities
+    * merge JP3D
+
+API modifications:
+
+    * Use a 64bits capable API
+    
+Misc:
+
+    * removed autotools build system
+    * folders hierarchies reorganisation
     * Huge amount of bug fixes. See CHANGES for details.

README

@@ -4,22 +4,44 @@ OPENJPEG LIBRARY and APPLICATIONS
 
 Details on folders hierarchy:
 
-* libopenjpeg: contains the sources of the openjpeg library
-    * jpwl: contains the additional sources if you want to build a JPWL-flavoured library.
-* applications: contains all applications that use the openjpeg library
+* src
+  * lib
+    * openjp2: contains the sources of the openjp2 library (Part 1 & 2)
+    * openjpwl: contains the additional sources if you want to build a JPWL-flavoured library.
+    * openjpip: complete client-server architecture for remote browsing of jpeg 2000 images.
+    * openjp3d: JP3D implementation
+    * openmj2: MJ2 implementation
+  * bin: contains all applications that use the openjpeg library
     * common: common files to all applications
-    * codec: a basic codec
+    * jp2: a basic codec
     * mj2: motion jpeg 2000 executables
-    * JavaOpenJPEG: java jni to use openjpeg in a java program
-    * jpip: complete client-server architecture for remote browsing of jpeg 2000 images. See corresponding README for more details.
-    * OPJViewer: gui for displaying j2k files (based on wxWidget)
+    * jpip: OpenJPIP applications (server and dec server)
+      * java: a Java client viewer for JPIP
+    * jp3d: JP3D applications
+      * tcltk: a test tool for JP3D
+    * wx
+      * OPJViewer: gui for displaying j2k files (based on wxWidget)
+* wrapping
+  * java: java jni to use openjpeg in a java program
 * thirdparty: thirdparty libraries used by some applications. These libraries will be built only if there are not found on the system. Note that libopenjpeg itself does not have any dependency.
 * doc: doxygen documentation setup file and man pages
 * tests: configuration files and utilities for the openjpeg test suite. All test images are located in 'http://openjpeg.googlecode.com/svn/data' folder.
-* CMake: cmake related files
-* m4: autotools related files
+* cmake: cmake related files
 
 see LICENSE for license and copyright information.
 see INSTALL for installation procedures.
 see NEWS for user visible changes in successive releases.
 see CHANGES for per-revision changes.
+
+----------------
+API/ABI
+
+OpenJPEG strives to provide a stable API/ABI for your applications. As such it
+only exposes a limited subset of its functions.  It uses a mecanism of
+exporting/hiding functions. If you are unsure which functions you can use in
+your applications, you should compile OpenJPEG using something similar to gcc:
+-fvisibility=hidden compilation flag.
+See also: http://gcc.gnu.org/wiki/Visibility
+
+On windows, MSVC directly supports export/hidding function and as such the only
+API available is the one supported by OpenJPEG.

THANKS

@@ -4,13 +4,11 @@ Many people have contributed to OpenJPEG by reporting problems, suggesting vario
 or submitting actual code. Here is a list of these people. Help me keep
 it complete and exempt of errors.
 
-Mathieu Malaterre
 Winfried Szukalski
 Vincent Torri
 Bob Friesenhahn
 Callum Lerwick
 Dzonatas Sol
-Mickaël Savinaud
 Julien Malik
 Jerôme Fimes
 Herve Drolon
@@ -31,3 +29,5 @@ Arnaud Maye
 Rex Dieter
 David Burken
 Parvatha Elangovan
+Hans Johnson
+Luc Hermitte

applications/CMakeLists.txt

@@ -1,22 +0,0 @@
-# Build the each application if it needed
-
-IF(BUILD_CODEC)
-  ADD_SUBDIRECTORY(codec)
-ENDIF(BUILD_CODEC)
-
-IF(BUILD_MJ2)
-  ADD_SUBDIRECTORY(mj2)
-ENDIF(BUILD_MJ2)
-
-# Client & Server:
-IF(BUILD_JPIP)
-  ADD_SUBDIRECTORY(jpip)
-ENDIF(BUILD_JPIP)
-
-IF(BUILD_VIEWER)
-  ADD_SUBDIRECTORY(OPJViewer)
-ENDIF(BUILD_VIEWER)
-
-IF(BUILD_JAVA)
-	ADD_SUBDIRECTORY(JavaOpenJPEG)
-ENDIF(BUILD_JAVA)

applications/Makefile.am

@@ -1,19 +0,0 @@
-MAINTAINERCLEANFILES = Makefile.in
-
-SUBDIRS = codec
-
-if WANT_MJ2
-SUBDIRS += mj2
-endif
-
-if WANT_JPIP_CODE
-SUBDIRS += jpip
-endif
-
-EXTRA_DIST = \
-CMakeLists.txt \
-common/color.c \
-common/color.h \
-common/format_defs.h \
-common/opj_getopt.c \
-common/opj_getopt.h

applications/codec/CMakeLists.txt

@@ -1,113 +0,0 @@
-# Build the demo app, small examples
-
-# First thing define the common source:
-SET(common_SRCS
-  convert.c
-  index.c
-  ${OPENJPEG_SOURCE_DIR}/applications/common/color.c
-  ${OPENJPEG_SOURCE_DIR}/applications/common/opj_getopt.c
-  )
-
-# Headers file are located here:
-INCLUDE_DIRECTORIES(
-  ${OPENJPEG_SOURCE_DIR}/libopenjpeg
-  ${LCMS_INCLUDE_DIRNAME}
-  ${OPENJPEG_SOURCE_DIR}/applications/common
-  ${Z_INCLUDE_DIRNAME}
-  ${PNG_INCLUDE_DIRNAME}
-  ${TIFF_INCLUDE_DIRNAME}
-  )
-
-IF(WIN32)
-  IF(BUILD_SHARED_LIBS)
-    ADD_DEFINITIONS(-DOPJ_EXPORTS)
-  ELSE(BUILD_SHARED_LIBS)
-    ADD_DEFINITIONS(-DOPJ_STATIC)
-  ENDIF(BUILD_SHARED_LIBS)
-ENDIF(WIN32)
-
-# Loop over all executables:
-FOREACH(exe j2k_to_image image_to_j2k j2k_dump)
-  ADD_EXECUTABLE(${exe} ${exe}.c ${common_SRCS})
-  TARGET_LINK_LIBRARIES(${exe} ${OPENJPEG_LIBRARY_NAME} 
-    ${PNG_LIBNAME} ${TIFF_LIBNAME} ${LCMS_LIBNAME}
-    )
-  # To support universal exe:
-  IF(ZLIB_FOUND AND APPLE)
-    TARGET_LINK_LIBRARIES(${exe} z)
-  ELSe(ZLIB_FOUND AND APPLE)
-    TARGET_LINK_LIBRARIES(${exe} ${Z_LIBNAME})
-  ENDIF(ZLIB_FOUND AND APPLE)
-
-  # On unix you need to link to the math library:
-  IF(UNIX)
-    TARGET_LINK_LIBRARIES(${exe} m)
-  ENDIF(UNIX)
-  # Install exe
-  INSTALL(TARGETS ${exe}
-    EXPORT OpenJPEGTargets
-    DESTINATION ${OPENJPEG_INSTALL_BIN_DIR} COMPONENT Applications
-  )
-ENDFOREACH(exe)
-
-# Install man pages
-INSTALL(
-  FILES       ${OPENJPEG_SOURCE_DIR}/doc/man/man1/image_to_j2k.1
-              ${OPENJPEG_SOURCE_DIR}/doc/man/man1/j2k_dump.1
-              ${OPENJPEG_SOURCE_DIR}/doc/man/man1/j2k_to_image.1
-  DESTINATION ${OPENJPEG_INSTALL_MAN_DIR}/man1)
-#
-
-IF(BUILD_JPWL)
-  ADD_EXECUTABLE(JPWL_j2k_to_image
-  j2k_to_image.c
-  ${common_SRCS}
-  )
-  
-  SET_PROPERTY(
-     TARGET JPWL_j2k_to_image
-     APPEND PROPERTY COMPILE_DEFINITIONS USE_JPWL
-  )
-
-  TARGET_LINK_LIBRARIES(JPWL_j2k_to_image ${OPENJPEG_LIBRARY_NAME}_JPWL
-    ${LCMS_LIBNAME} ${PNG_LIBNAME} ${TIFF_LIBNAME})
-    
-  # To support universal exe:
-  IF(ZLIB_FOUND AND APPLE)
-    TARGET_LINK_LIBRARIES(JPWL_j2k_to_image z)
-  ELSe(ZLIB_FOUND AND APPLE)
-    TARGET_LINK_LIBRARIES(JPWL_j2k_to_image ${Z_LIBNAME})
-  ENDIF(ZLIB_FOUND AND APPLE)
-  
-  IF(UNIX)
-    TARGET_LINK_LIBRARIES(JPWL_j2k_to_image m)
-  ENDIF(UNIX)
-
-  ADD_EXECUTABLE(JPWL_image_to_j2k
-  image_to_j2k.c
-  ${common_SRCS}
-  )
-  
-  SET_PROPERTY(
-     TARGET JPWL_image_to_j2k
-     APPEND PROPERTY COMPILE_DEFINITIONS USE_JPWL
-  )
-
-  TARGET_LINK_LIBRARIES(JPWL_image_to_j2k ${OPENJPEG_LIBRARY_NAME}_JPWL 
-  	${LCMS_LIBNAME} ${PNG_LIBNAME} ${TIFF_LIBNAME})
-  	
-  # To support universal exe:
-  IF(ZLIB_FOUND AND APPLE)
-    TARGET_LINK_LIBRARIES(JPWL_image_to_j2k z)
-  ELSe(ZLIB_FOUND AND APPLE)
-    TARGET_LINK_LIBRARIES(JPWL_image_to_j2k ${Z_LIBNAME})
-  ENDIF(ZLIB_FOUND AND APPLE)
-
-  IF(UNIX)
-    TARGET_LINK_LIBRARIES(JPWL_image_to_j2k m)
-  ENDIF(UNIX)
-
-  INSTALL(TARGETS JPWL_image_to_j2k JPWL_j2k_to_image
-    DESTINATION ${OPENJPEG_INSTALL_BIN_DIR} COMPONENT Applications
-  )
-ENDIF(BUILD_JPWL)

applications/codec/Makefile.am

@@ -1,118 +0,0 @@
-MAINTAINERCLEANFILES = Makefile.in
-
-bin_PROGRAMS = j2k_to_image image_to_j2k j2k_dump
-
-if WANT_JPWL
-bin_PROGRAMS += JPWL_j2k_to_image JPWL_image_to_j2k
-endif
-
-j2k_to_image_CPPFLAGS = \
--I. \
--I$(top_srcdir)/applications/codec \
--I$(top_builddir)/applications/codec \
--I$(top_srcdir)/applications/common \
--I$(top_builddir)/applications/common \
--I$(top_srcdir)/libopenjpeg \
--I$(top_builddir)/libopenjpeg \
-@PNG_CFLAGS@ \
-@TIFF_CFLAGS@ \
-@LCMS1_CFLAGS@ \
-@LCMS2_CFLAGS@
-j2k_to_image_CFLAGS = 
-j2k_to_image_LDADD = $(top_builddir)/libopenjpeg/libopenjpeg.la @LCMS1_LIBS@ @LCMS2_LIBS@ @TIFF_LIBS@ @PNG_LIBS@ -lm
-j2k_to_image_SOURCES = \
-../common/color.c \
-../common/opj_getopt.c \
-convert.c \
-index.c \
-j2k_to_image.c \
-../common/color.h
-
-image_to_j2k_CPPFLAGS = \
--I. \
--I$(top_srcdir)/applications/codec \
--I$(top_builddir)/applications/codec \
--I$(top_srcdir)/applications/common \
--I$(top_builddir)/applications/common \
--I$(top_srcdir)/libopenjpeg \
--I$(top_builddir)/libopenjpeg \
-@PNG_CFLAGS@ \
-@TIFF_CFLAGS@
-image_to_j2k_CFLAGS = 
-image_to_j2k_LDADD = $(top_builddir)/libopenjpeg/libopenjpeg.la @TIFF_LIBS@ @PNG_LIBS@ -lm
-image_to_j2k_SOURCES = \
-../common/opj_getopt.c \
-convert.c \
-index.c \
-image_to_j2k.c \
-convert.h \
-../common/format_defs.h \
-index.h
-
-j2k_dump_CPPFLAGS = \
--I. \
--I$(top_srcdir)/applications/codec \
--I$(top_builddir)/applications/codec \
--I$(top_srcdir)/applications/common \
--I$(top_builddir)/applications/common \
--I$(top_srcdir)/libopenjpeg \
--I$(top_builddir)/libopenjpeg
-j2k_dump_CFLAGS = 
-j2k_dump_LDADD = $(top_builddir)/libopenjpeg/libopenjpeg.la -lm
-j2k_dump_SOURCES = \
-../common/opj_getopt.c \
-index.c \
-j2k_dump.c \
-../common/opj_getopt.h \
-index.h
-
-JPWL_j2k_to_image_CPPFLAGS = \
--I. \
--I$(top_srcdir)/applications/common \
--I$(top_builddir)/applications/common \
--I$(top_srcdir)/libopenjpeg \
--I$(top_builddir)/libopenjpeg \
--DUSE_JPWL \
-@TIFF_CFLAGS@ \
-@PNG_CFLAGS@ \
-@LCMS1_CFLAGS@ \
-@LCMS2_CFLAGS@
-JPWL_j2k_to_image_CFLAGS =
-JPWL_j2k_to_image_LDADD = $(top_builddir)/libopenjpeg/jpwl/libopenjpeg_JPWL.la  @LCMS1_LIBS@ @LCMS2_LIBS@ @TIFF_LIBS@ @PNG_LIBS@
-JPWL_j2k_to_image_SOURCES = \
-../common/color.c \
-../common/opj_getopt.c \
-index.c \
-convert.c \
-j2k_to_image.c
-
-JPWL_image_to_j2k_CPPFLAGS = \
--I. \
--I$(top_srcdir)/applications/common \
--I$(top_builddir)/applications/common \
--I$(top_srcdir)/libopenjpeg \
--I$(top_builddir)/libopenjpeg \
--DUSE_JPWL \
-@TIFF_CFLAGS@ \
-@PNG_CFLAGS@
-JPWL_image_to_j2k_CFLAGS =
-JPWL_image_to_j2k_LDADD = $(top_builddir)/libopenjpeg/jpwl/libopenjpeg_JPWL.la @TIFF_LIBS@ @PNG_LIBS@
-
-JPWL_image_to_j2k_SOURCES = \
-../common/opj_getopt.c \
-index.c \
-convert.c \
-image_to_j2k.c
-
-EXTRA_DIST = \
-CMakeLists.txt \
-windirent.h
-
-install-data-hook:
-	@echo -e " (B)\t$(bindir)/j2k_to_image$(EXEEXT)" >> $(top_builddir)/report.txt
-	@echo -e " (B)\t$(bindir)/image_to_j2k$(EXEEXT)" >> $(top_builddir)/report.txt
-	@echo -e " (B)\t$(bindir)/j2k_dump$(EXEEXT)" >> $(top_builddir)/report.txt
-if WANT_JPWL
-	@echo -e " (B)\t$(bindir)/JPWL_j2k_to_image$(EXEEXT)" >> $(top_builddir)/report.txt
-	@echo -e " (B)\t$(bindir)/JPWL_image_to_j2k$(EXEEXT)" >> $(top_builddir)/report.txt
-endif

applications/codec/README

@@ -1,8 +0,0 @@
-Simple codec compilation
-------------------------
-Once you've built the library, you might want to test it with a basic codec. To do this, go to the codec directory and either use the provided Makefile or use one of the following commands to build an encoder and decoder respectively:
-
-gcc index.c convert.c image_to_j2k.c -o image_to_j2k -lopenjpeg -I ../libopenjpeg/ -lm -ltiff
-gcc index.c convert.c j2k_to_image.c -o j2k_to_image -lopenjpeg -I ../libopenjpeg/ -lm -ltiff
-
-You should add '-L..' to those lines if you did not use the 'install' target when building the library.

applications/codec/j2k_dump.c

@@ -1,677 +0,0 @@
-/*
- * Copyright (c) 20010, Mathieu Malaterre, GDCM
- * All rights reserved.
- *
- * Redistribution and use in source and binary forms, with or without
- * modification, are permitted provided that the following conditions
- * are met:
- * 1. Redistributions of source code must retain the above copyright
- *    notice, this list of conditions and the following disclaimer.
- * 2. Redistributions in binary form must reproduce the above copyright
- *    notice, this list of conditions and the following disclaimer in the
- *    documentation and/or other materials provided with the distribution.
- *
- * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS `AS IS'
- * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
- * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
- * ARE DISCLAIMED.  IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
- * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
- * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
- * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
- * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
- * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
- * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
- * POSSIBILITY OF SUCH DAMAGE.
- */
-
-#include <stdio.h>
-#include <string.h>
-#include <stdlib.h>
-#include <math.h>
-
-#ifdef _WIN32
-#include "windirent.h"
-#else
-#include <dirent.h>
-#endif /* _WIN32 */
-
-#ifdef _WIN32
-#include <windows.h>
-#else
-#include <strings.h>
-#define _stricmp strcasecmp
-#define _strnicmp strncasecmp
-#endif /* _WIN32 */
-
-#include "opj_config.h"
-#include "openjpeg.h"
-#include "j2k.h"
-#include "jp2.h"
-#include "opj_getopt.h"
-#include "convert.h"
-#include "index.h"
-
-#include "format_defs.h"
-
-typedef struct dircnt{
-	/** Buffer for holding images read from Directory*/
-	char *filename_buf;
-	/** Pointer to the buffer*/
-	char **filename;
-}dircnt_t;
-
-
-typedef struct img_folder{
-	/** The directory path of the folder containing input images*/
-	char *imgdirpath;
-	/** Output format*/
-	const char *out_format;
-	/** Enable option*/
-	char set_imgdir;
-	/** Enable Cod Format for output*/
-	char set_out_format;
-
-}img_fol_t;
-
-void decode_help_display(void) {
-	fprintf(stdout,"HELP for j2k_dump\n----\n\n");
-	fprintf(stdout,"- the -h option displays this help information on screen\n\n");
-
-/* UniPG>> */
-	fprintf(stdout,"List of parameters for the JPEG 2000 "
-#ifdef USE_JPWL
-		"+ JPWL "
-#endif /* USE_JPWL */
-		"decoder:\n");
-/* <<UniPG */
-	fprintf(stdout,"\n");
-	fprintf(stdout,"\n");
-	fprintf(stdout,"  -ImgDir \n");
-	fprintf(stdout,"	Image file Directory path \n");
-	fprintf(stdout,"  -i <compressed file>\n");
-	fprintf(stdout,"    REQUIRED only if an Input image directory not specified\n");
-	fprintf(stdout,"    Currently accepts J2K-files, JP2-files and JPT-files. The file type\n");
-	fprintf(stdout,"    is identified based on its suffix.\n");
-	fprintf(stdout,"  -o <output file>\n");
-  fprintf(stdout,"    OPTIONAL\n");
-  fprintf(stdout,"    Output file where file info will be dump.\n");
-  fprintf(stdout,"    By default it will be in the stdout.\n");
-	fprintf(stdout,"\n");
-}
-
-/* -------------------------------------------------------------------------- */
-static void j2k_dump_image(FILE *fd, opj_image_t * img);
-static void j2k_dump_cp(FILE *fd, opj_image_t * img, opj_cp_t * cp);
-
-int get_num_images(char *imgdirpath){
-	DIR *dir;
-	struct dirent* content;	
-	int num_images = 0;
-
-	/*Reading the input images from given input directory*/
-
-	dir= opendir(imgdirpath);
-	if(!dir){
-		fprintf(stderr,"Could not open Folder %s\n",imgdirpath);
-		return 0;
-	}
-	
-	while((content=readdir(dir))!=NULL){
-		if(strcmp(".",content->d_name)==0 || strcmp("..",content->d_name)==0 )
-			continue;
-		num_images++;
-	}
-	return num_images;
-}
-
-int load_images(dircnt_t *dirptr, char *imgdirpath){
-	DIR *dir;
-	struct dirent* content;	
-	int i = 0;
-
-	/*Reading the input images from given input directory*/
-
-	dir= opendir(imgdirpath);
-	if(!dir){
-		fprintf(stderr,"Could not open Folder %s\n",imgdirpath);
-		return 1;
-	}else	{
-		fprintf(stderr,"Folder opened successfully\n");
-	}
-	
-	while((content=readdir(dir))!=NULL){
-		if(strcmp(".",content->d_name)==0 || strcmp("..",content->d_name)==0 )
-			continue;
-
-		strcpy(dirptr->filename[i],content->d_name);
-		i++;
-	}
-	return 0;	
-}
-
-int get_file_format(char *filename) {
-	unsigned int i;
-	static const char *extension[] = {"pgx", "pnm", "pgm", "ppm", "bmp","tif", "raw", "tga", "png", "j2k", "jp2", "jpt", "j2c", "jpc"  };
-	static const int format[] = { PGX_DFMT, PXM_DFMT, PXM_DFMT, PXM_DFMT, BMP_DFMT, TIF_DFMT, RAW_DFMT, TGA_DFMT, PNG_DFMT, J2K_CFMT, JP2_CFMT, JPT_CFMT, J2K_CFMT, J2K_CFMT };
-	char * ext = strrchr(filename, '.');
-	if (ext == NULL)
-		return -1;
-	ext++;
-	if(ext) {
-		for(i = 0; i < sizeof(format)/sizeof(*format); i++) {
-			if(_strnicmp(ext, extension[i], 3) == 0) {
-				return format[i];
-			}
-		}
-	}
-
-	return -1;
-}
-
-char get_next_file(int imageno,dircnt_t *dirptr,img_fol_t *img_fol, opj_dparameters_t *parameters){
-	char image_filename[OPJ_PATH_LEN], infilename[OPJ_PATH_LEN],outfilename[OPJ_PATH_LEN],temp_ofname[OPJ_PATH_LEN];
-	char *temp_p, temp1[OPJ_PATH_LEN]="";
-
-	strcpy(image_filename,dirptr->filename[imageno]);
-	fprintf(stderr,"File Number %d \"%s\"\n",imageno,image_filename);
-	parameters->decod_format = get_file_format(image_filename);
-	if (parameters->decod_format == -1)
-		return 1;
-	sprintf(infilename,"%s/%s",img_fol->imgdirpath,image_filename);
-	strncpy(parameters->infile, infilename, sizeof(infilename));
-
-	/*Set output file*/
-	strcpy(temp_ofname,strtok(image_filename,"."));
-	while((temp_p = strtok(NULL,".")) != NULL){
-		strcat(temp_ofname,temp1);
-		sprintf(temp1,".%s",temp_p);
-	}
-	if(img_fol->set_out_format==1){
-		sprintf(outfilename,"%s/%s.%s",img_fol->imgdirpath,temp_ofname,img_fol->out_format);
-		strncpy(parameters->outfile, outfilename, sizeof(outfilename));
-	}
-	return 0;
-}
-
-/* -------------------------------------------------------------------------- */
-int parse_cmdline_decoder(int argc, char **argv, opj_dparameters_t *parameters,img_fol_t *img_fol, char *indexfilename) {
-	/* parse the command line */
-	int totlen, c;
-	opj_option_t long_option[]={
-		{"ImgDir",REQ_ARG, NULL ,'y'},
-	};
-	const char optlist[] = "i:o:h";
-
-	OPJ_ARG_NOT_USED(indexfilename);
-
-	totlen=sizeof(long_option);
-	img_fol->set_out_format = 0;
-	do {
-		c = opj_getopt_long(argc, argv,optlist,long_option,totlen);
-		if (c == -1)
-			break;
-		switch (c) {
-			case 'i':			/* input file */
-			{
-				char *infile = opj_optarg;
-				parameters->decod_format = get_file_format(infile);
-				switch(parameters->decod_format) {
-					case J2K_CFMT:
-					case JP2_CFMT:
-					case JPT_CFMT:
-						break;
-					default:
-						fprintf(stderr, 
-							"!! Unrecognized format for infile : %s [accept only *.j2k, *.jp2, *.jpc or *.jpt] !!\n\n", 
-							infile);
-						return 1;
-				}
-				strncpy(parameters->infile, infile, sizeof(parameters->infile)-1);
-			}
-			break;
-
-			/* ------------------------------------------------------ */
-
-			case 'o':     /* output file */
-			{
-			  char *outfile = opj_optarg;
-			  strncpy(parameters->outfile, outfile, sizeof(parameters->outfile)-1);
-			}
-			break;
-				
-				/* ----------------------------------------------------- */
-
-			case 'h': 			/* display an help description */
-				decode_help_display();
-				return 1;				
-
-				/* ------------------------------------------------------ */
-
-			case 'y':			/* Image Directory path */
-				{
-					img_fol->imgdirpath = (char*)malloc(strlen(opj_optarg) + 1);
-					strcpy(img_fol->imgdirpath,opj_optarg);
-					img_fol->set_imgdir=1;
-				}
-				break;
-
-				/* ----------------------------------------------------- */
-			
-			default:
-				fprintf(stderr,"WARNING -> this option is not valid \"-%c %s\"\n",c, opj_optarg);
-				break;
-		}
-	}while(c != -1);
-
-	/* check for possible errors */
-	if(img_fol->set_imgdir==1){
-		if(!(parameters->infile[0]==0)){
-			fprintf(stderr, "Error: options -ImgDir and -i cannot be used together !!\n");
-			return 1;
-		}
-		if(img_fol->set_out_format == 0){
-			fprintf(stderr, "Error: When -ImgDir is used, -OutFor <FORMAT> must be used !!\n");
-			fprintf(stderr, "Only one format allowed! Valid format PGM, PPM, PNM, PGX, BMP, TIF, RAW and TGA!!\n");
-			return 1;
-		}
-		if(!((parameters->outfile[0] == 0))){
-			fprintf(stderr, "Error: options -ImgDir and -o cannot be used together !!\n");
-			return 1;
-		}
-	}else{
-		if((parameters->infile[0] == 0) ) {
-			fprintf(stderr, "Example: %s -i image.j2k\n",argv[0]);
-			fprintf(stderr, "    Try: %s -h\n",argv[0]);
-			return 1;
-		}
-	}
-
-	return 0;
-}
-
-/* -------------------------------------------------------------------------- */
-
-/**
-sample error callback expecting a FILE* client object
-*/
-void error_callback(const char *msg, void *client_data) {
-	FILE *stream = (FILE*)client_data;
-	fprintf(stream, "[ERROR] %s", msg);
-}
-/**
-sample warning callback expecting a FILE* client object
-*/
-void warning_callback(const char *msg, void *client_data) {
-	FILE *stream = (FILE*)client_data;
-	fprintf(stream, "[WARNING] %s", msg);
-}
-/**
-sample debug callback expecting no client object
-*/
-void info_callback(const char *msg, void *client_data) {
-	(void)client_data;
-	fprintf(stdout, "[INFO] %s", msg);
-}
-
-/* -------------------------------------------------------------------------- */
-
-int main(int argc, char *argv[])
-{
-	opj_dparameters_t parameters;	/* decompression parameters */
-	img_fol_t img_fol;
-	opj_event_mgr_t event_mgr;		/* event manager */
-	opj_image_t *image = NULL;
-	FILE *fsrc = NULL, *fout = NULL;
-	unsigned char *src = NULL;
-	int file_length;
-	int num_images;
-	int i,imageno;
-	dircnt_t *dirptr = NULL;
-	opj_dinfo_t* dinfo = NULL;	/* handle to a decompressor */
-	opj_cio_t *cio = NULL;
-	opj_codestream_info_t cstr_info;  /* Codestream information structure */
-	char indexfilename[OPJ_PATH_LEN];	/* index file name */
-
-	/* configure the event callbacks (not required) */
-	memset(&event_mgr, 0, sizeof(opj_event_mgr_t));
-	event_mgr.error_handler = error_callback;
-	event_mgr.warning_handler = warning_callback;
-	event_mgr.info_handler = info_callback;
-
-	/* set decoding parameters to default values */
-	opj_set_default_decoder_parameters(&parameters);
-
-	/* Initialize indexfilename and img_fol */
-	*indexfilename = 0;
-	memset(&img_fol,0,sizeof(img_fol_t));
-
-	/* parse input and get user encoding parameters */
-	if(parse_cmdline_decoder(argc, argv, &parameters,&img_fol, indexfilename) == 1) {
-		return 1;
-	}
-
-	/* Initialize reading of directory */
-	if(img_fol.set_imgdir==1){	
-		num_images=get_num_images(img_fol.imgdirpath);
-
-		dirptr=(dircnt_t*)malloc(sizeof(dircnt_t));
-		if(dirptr){
-			dirptr->filename_buf = (char*)malloc(num_images*OPJ_PATH_LEN*sizeof(char));	/* Stores at max 10 image file names*/
-			dirptr->filename = (char**) malloc(num_images*sizeof(char*));
-
-			if(!dirptr->filename_buf){
-				return 1;
-			}
-			for(i=0;i<num_images;i++){
-				dirptr->filename[i] = dirptr->filename_buf + i*OPJ_PATH_LEN;
-			}
-		}
-		if(load_images(dirptr,img_fol.imgdirpath)==1){
-			return 1;
-		}
-		if (num_images==0){
-			fprintf(stdout,"Folder is empty\n");
-			return 1;
-		}
-	}else{
-		num_images=1;
-	}
-
-	/* */
-	if (parameters.outfile[0] != 0)
-	  {
-	  fout = fopen(parameters.outfile,"w");
-    if (!fout)
-      {
-      fprintf(stderr, "ERROR -> failed to open %s for reading\n", parameters.outfile);
-      return 1;
-      }
-	  }
-	else
-	  fout = stdout;
-
-	/*Encoding image one by one*/
-	for(imageno = 0; imageno < num_images ; imageno++)
-  {
-		image = NULL;
-		fprintf(stderr,"\n");
-
-		if(img_fol.set_imgdir==1){
-			if (get_next_file(imageno, dirptr,&img_fol, &parameters)) {
-				fprintf(stderr,"skipping file...\n");
-				continue;
-			}
-		}
-
-		/* read the input file and put it in memory */
-		/* ---------------------------------------- */
-		fsrc = fopen(parameters.infile, "rb");
-		if (!fsrc) {
-			fprintf(stderr, "ERROR -> failed to open %s for reading\n", parameters.infile);
-			return 1;
-		}
-		fseek(fsrc, 0, SEEK_END);
-		file_length = ftell(fsrc);
-		fseek(fsrc, 0, SEEK_SET);
-		src = (unsigned char *) malloc(file_length);
-		if (fread(src, 1, file_length, fsrc) != (size_t)file_length)
-		{
-			free(src);
-			fclose(fsrc);
-			fclose(fout);
-			fprintf(stderr, "\nERROR: fread return a number of element different from the expected.\n");
-			return 1;
-		}
-		fclose(fsrc);
-
-		/* decode the code-stream */
-		/* ---------------------- */
-
-		switch(parameters.decod_format) {
-		case J2K_CFMT:
-		{
-			/* JPEG-2000 codestream */
-
-			/* get a decoder handle */
-			dinfo = opj_create_decompress(CODEC_J2K);
-
-			/* catch events using our callbacks and give a local context */
-			opj_set_event_mgr((opj_common_ptr)dinfo, &event_mgr, stderr);
-
-			/* setup the decoder decoding parameters using user parameters */
-			opj_setup_decoder(dinfo, &parameters);
-
-			/* open a byte stream */
-			cio = opj_cio_open((opj_common_ptr)dinfo, src, file_length);
-
-			/* decode the stream and fill the image structure */
-			if (*indexfilename)				/* If need to extract codestream information*/
-				image = opj_decode_with_info(dinfo, cio, &cstr_info);
-			else
-				image = opj_decode(dinfo, cio);
-			if(!image) {
-				fprintf(stderr, "ERROR -> j2k_to_image: failed to decode image!\n");
-				opj_destroy_decompress(dinfo);
-				opj_cio_close(cio);
-				fclose(fout);
-				free(src);
-				return 1;
-			}
-			/* dump image */
-      j2k_dump_image(fout, image);
-
-			/* dump cp */
-      j2k_dump_cp(fout, image, ((opj_j2k_t*)dinfo->j2k_handle)->cp);
-
-			/* close the byte stream */
-			opj_cio_close(cio);
-
-			/* Write the index to disk */
-			if (*indexfilename) {
-				opj_bool bSuccess;
-				bSuccess = write_index_file(&cstr_info, indexfilename);
-				if (bSuccess) {
-					fprintf(stderr, "Failed to output index file\n");
-				}
-			}
-		}
-		break;
-
-		case JP2_CFMT:
-		{
-			/* JPEG 2000 compressed image data */
-
-			/* get a decoder handle */
-			dinfo = opj_create_decompress(CODEC_JP2);
-
-			/* catch events using our callbacks and give a local context */
-			opj_set_event_mgr((opj_common_ptr)dinfo, &event_mgr, stderr);
-
-			/* setup the decoder decoding parameters using the current image and user parameters */
-			opj_setup_decoder(dinfo, &parameters);
-
-			/* open a byte stream */
-			cio = opj_cio_open((opj_common_ptr)dinfo, src, file_length);
-
-			/* decode the stream and fill the image structure */
-			if (*indexfilename)				/* If need to extract codestream information*/
-				image = opj_decode_with_info(dinfo, cio, &cstr_info);
-			else
-				image = opj_decode(dinfo, cio);			
-			if(!image) {
-				fprintf(stderr, "ERROR -> j2k_to_image: failed to decode image!\n");
-				opj_destroy_decompress(dinfo);
-				opj_cio_close(cio);
-				fclose(fout);
-				free(src);
-				return 1;
-			}
-			/* dump image */
-	  if(image->icc_profile_buf)
-	 {
-	  free(image->icc_profile_buf); image->icc_profile_buf = NULL;
-	 }	
-      j2k_dump_image(fout, image);
-
-			/* dump cp */
-      j2k_dump_cp(fout, image, ((opj_jp2_t*)dinfo->jp2_handle)->j2k->cp);
-
-			/* close the byte stream */
-			opj_cio_close(cio);
-
-			/* Write the index to disk */
-			if (*indexfilename) {
-				opj_bool bSuccess;
-				bSuccess = write_index_file(&cstr_info, indexfilename);
-				if (bSuccess) {
-					fprintf(stderr, "Failed to output index file\n");
-				}
-			}
-		}
-		break;
-
-		case JPT_CFMT:
-		{
-			/* JPEG 2000, JPIP */
-
-			/* get a decoder handle */
-			dinfo = opj_create_decompress(CODEC_JPT);
-
-			/* catch events using our callbacks and give a local context */
-			opj_set_event_mgr((opj_common_ptr)dinfo, &event_mgr, stderr);
-
-			/* setup the decoder decoding parameters using user parameters */
-			opj_setup_decoder(dinfo, &parameters);
-
-			/* open a byte stream */
-			cio = opj_cio_open((opj_common_ptr)dinfo, src, file_length);
-
-			/* decode the stream and fill the image structure */
-			if (*indexfilename)				/* If need to extract codestream information*/
-				image = opj_decode_with_info(dinfo, cio, &cstr_info);
-			else
-				image = opj_decode(dinfo, cio);
-			if(!image) {
-				fprintf(stderr, "ERROR -> j2k_to_image: failed to decode image!\n");
-				opj_destroy_decompress(dinfo);
-				opj_cio_close(cio);
-				fclose(fout);
-				free(src);
-				return 1;
-			}
-
-			/* close the byte stream */
-			opj_cio_close(cio);
-
-			/* Write the index to disk */
-			if (*indexfilename) {
-				opj_bool bSuccess;
-				bSuccess = write_index_file(&cstr_info, indexfilename);
-				if (bSuccess) {
-					fprintf(stderr, "Failed to output index file\n");
-				}
-			}
-		}
-		break;
-
-		default:
-			fprintf(stderr, "skipping file..\n");
-			continue;
-	}
-
-		/* free the memory containing the code-stream */
-		free(src);
-		src = NULL;
-
-		/* free remaining structures */
-		if(dinfo) {
-			opj_destroy_decompress(dinfo);
-		}
-		/* free codestream information structure */
-		if (*indexfilename)	
-			opj_destroy_cstr_info(&cstr_info);
-		/* free image data structure */
-		opj_image_destroy(image);
-
-	}
-
-	fclose(fout);
-
-  return EXIT_SUCCESS;
-}
-
-
-static void j2k_dump_image(FILE *fd, opj_image_t * img) {
-	int compno;
-	fprintf(fd, "image {\n");
-	fprintf(fd, "  x0=%d, y0=%d, x1=%d, y1=%d\n", img->x0, img->y0, img->x1, img->y1);
-	fprintf(fd, "  numcomps=%d\n", img->numcomps);
-	for (compno = 0; compno < img->numcomps; compno++) {
-		opj_image_comp_t *comp = &img->comps[compno];
-		fprintf(fd, "  comp %d {\n", compno);
-		fprintf(fd, "    dx=%d, dy=%d\n", comp->dx, comp->dy);
-		fprintf(fd, "    prec=%d\n", comp->prec);
-		/*fprintf(fd, "    bpp=%d\n", comp->bpp);*/
-		fprintf(fd, "    sgnd=%d\n", comp->sgnd);
-		fprintf(fd, "  }\n");
-	}
-	fprintf(fd, "}\n");
-}
-
-static void j2k_dump_cp(FILE *fd, opj_image_t * img, opj_cp_t * cp) {
-	int tileno, compno, layno, bandno, resno, numbands;
-	fprintf(fd, "coding parameters {\n");
-	fprintf(fd, "  tx0=%d, ty0=%d\n", cp->tx0, cp->ty0);
-	fprintf(fd, "  tdx=%d, tdy=%d\n", cp->tdx, cp->tdy);
-	fprintf(fd, "  tw=%d, th=%d\n", cp->tw, cp->th);
-	for (tileno = 0; tileno < cp->tw * cp->th; tileno++) {
-		opj_tcp_t *tcp = &cp->tcps[tileno];
-		fprintf(fd, "  tile %d {\n", tileno);
-		fprintf(fd, "    csty=%x\n", tcp->csty);
-		fprintf(fd, "    prg=%d\n", tcp->prg);
-		fprintf(fd, "    numlayers=%d\n", tcp->numlayers);
-		fprintf(fd, "    mct=%d\n", tcp->mct);
-		fprintf(fd, "    rates=");
-		for (layno = 0; layno < tcp->numlayers; layno++) {
-			fprintf(fd, "%.1f ", tcp->rates[layno]);
-		}
-		fprintf(fd, "\n");
-		for (compno = 0; compno < img->numcomps; compno++) {
-			opj_tccp_t *tccp = &tcp->tccps[compno];
-			fprintf(fd, "    comp %d {\n", compno);
-			fprintf(fd, "      csty=%x\n", tccp->csty);
-			fprintf(fd, "      numresolutions=%d\n", tccp->numresolutions);
-			fprintf(fd, "      cblkw=%d\n", tccp->cblkw);
-			fprintf(fd, "      cblkh=%d\n", tccp->cblkh);
-			fprintf(fd, "      cblksty=%x\n", tccp->cblksty);
-			fprintf(fd, "      qmfbid=%d\n", tccp->qmfbid);
-			fprintf(fd, "      qntsty=%d\n", tccp->qntsty);
-			fprintf(fd, "      numgbits=%d\n", tccp->numgbits);
-			fprintf(fd, "      roishift=%d\n", tccp->roishift);
-			fprintf(fd, "      stepsizes=");
-			numbands = tccp->qntsty == J2K_CCP_QNTSTY_SIQNT ? 1 : tccp->numresolutions * 3 - 2;
-			for (bandno = 0; bandno < numbands; bandno++) {
-				fprintf(fd, "(%d,%d) ", tccp->stepsizes[bandno].mant,
-					tccp->stepsizes[bandno].expn);
-			}
-			fprintf(fd, "\n");
-			
-			if (tccp->csty & J2K_CCP_CSTY_PRT) {
-				fprintf(fd, "      prcw=");
-				for (resno = 0; resno < tccp->numresolutions; resno++) {
-					fprintf(fd, "%d ", tccp->prcw[resno]);
-				}
-				fprintf(fd, "\n");
-				fprintf(fd, "      prch=");
-				for (resno = 0; resno < tccp->numresolutions; resno++) {
-					fprintf(fd, "%d ", tccp->prch[resno]);
-				}
-				fprintf(fd, "\n");
-			}
-			fprintf(fd, "    }\n");
-		}
-		fprintf(fd, "  }\n");
-	}
-	fprintf(fd, "}\n");
-}
-

applications/jpip/CHANGES

@@ -1,120 +0,0 @@
-What's New for OpenJPIP
-
-* : fixed
-- : removed
-! : changed
-+ : added
-
-January 26, 2011
-! [kaori] unapplied auxtrans_manager to the local mode
-
-December 24, 2011
-* [kaori] additional modification for the warning
-
-December 22, 2011
-* [kaori] fixed auxtrans_manager to enable MAC
-* [kaori] warnings due to disregarding return value are removed
-
-November 30, 2011
-+ [kaori] TCP return (http-tcp) implemented
-
-November 16, 2011
-* [kaori] fixed Region of Interest option, and memory leak of opj_dec_server
-+ [kaori] new feature to target JP2 files from www (libcurl required)
-* [kaori] fixed opj_server execusion error (instant terminating) with autotool, cmake still need to be fixed
-
-November 8, 2011
-! [kaori] updated main page of doxygen
-
-November 3, 2011
-* [kaori] solved memory leak of opj_server
-! [kaori] removed redundant defines
-
-November 2, 2011
-* [antonin] additional patches for autotools and cmake
-
-October 26, 2011
-* [kaori] additional patches for autotool are applied
-
-October 25, 2011
-* [kaori] patches for cmake and autotool are applied
-* [kaori] fixed client viewer to be compatible with server response header both Content-type and Content-Type
-
-October 20, 2011
-+ [added] API style in openJPIP library
-! [kaori] rearranged directories, applications are all under util/ directory, currently only 'make -f Makefile.nix' works
-
-October 18, 2011
-! [kaori] rearranged opj_server, opj_dec_server directory
-
-October 14, 2011
-+ [kaori] enable all progression orders
-
-October 12, 2011
-+ [kaori] enable layers requests; restricting the number of codesream quality layers
-
-October 11, 2011
-+ [antonin] enable JPT-stream request from client viewer option (credit to kaori)
-
-October 10, 2011
-- [antonin] removed obsolete indexer utility (credit to kaori)
-+ [antonin] enabled JPP-stream (credit to kaori)
-
-September 16, 2011
-+ [kaori] enabled stateless requests from the opj_viewers
-
-Septempber 1, 2011
-* [kaori] changed terminating status of opj_server in debug/non-server mode
-
-August 27, 2011
-* [antonin] fixed missing include directory in opj_client/opj_dec_server/CMakeLists.txt
-
-August 26, 2011
-* [antonin] fixed cmake and autotools files to reflect recent indexer changes in JPIP
-! [kaori] indexer using the latest openjpeg library
-* [antonin] fixed cmake and autotools files to reflect recent changes in JPIP
-! [kaori] fixed Makefile.nix to load openjpeg library from this archive
-
-August 25, 2011
-+ [kaori] added tid request support to JPIP client
-+ [kaori] added quit JPIP server request
-
-August 24, 2011
-+ [kaori] added cachemodel_manager, which had been managed in target_manager previously
-+ [kaori] added tid request support to JPIP server
-
-August 16, 2011
-* [antonin] fixed cmake support for openjpip
-
-August 12, 2011
-+ [antonin] added cmake support to openjpip
-
-July 6, 2011
-* [antonin] JPIP : fixed autotools to work with recent name changes
-
-July 5, 2011
-! [kaori] changed parameter, file names, message names regarding JPT-stream to JPIP-stream, which handles also JPP-stream
-
-May 26, 2011
-! [antonin] changed Makefile to Makefile.nix to avoid having autotools overwrite them.
-
-May 23, 2011
-+ [antonin] added autotools for the 'tools' directory
-+ [antonin] added autotools as a build method for jpip (credit to Vincent Torri)
-
-May 10, 2011
-! [kaori] opj_viewer removed the xml functions (for users without Xersus2)
-+ [kaori] renamed opj_viewer  to opj_viewer_xerces ( needs Xersus2)
-! [kaori] Modification of opj_dec_server to be portable to windows  
-
-May 9, 2011
-* [kaori] Removal of c99 from the compile option (to be compatible to win platform) and bool definition in libopenjpip/bool.h
-
-May 9, 2011
-* [antonin] OpenJPIP: small bug fixes to compile on win platform
-
-May 8, 2011
-* [antonin] OpenJPIP: fixed several bugs in opj_server (removal of strsep function, duplication of query string) + some changes to compile opj_server under windows (replacement of strcasecmp(), bzero()).
-
-April 14, 2011
-+ [antonin] initial commit of OpenJPIP 1.0, a JPIP client-server architecture based on OpenJPEG (see README file in jpip directory for more details)

applications/jpip/CMakeLists.txt

@@ -1,13 +0,0 @@
-# required dep for server:
-IF(BUILD_JPIP_SERVER)
-  FIND_PACKAGE(CURL REQUIRED)
-  FIND_PACKAGE(FCGI REQUIRED)
-  FIND_PACKAGE(PTHREAD REQUIRED)
-ENDIF(BUILD_JPIP_SERVER)
-
-# JPIP library:
-ADD_SUBDIRECTORY(libopenjpip)
-
-# JPIP binaries:
-ADD_SUBDIRECTORY(util)
-

applications/jpip/Makefile.am

@@ -1,3 +0,0 @@
-MAINTAINERCLEANFILES = Makefile.in
-
-SUBDIRS = libopenjpip util

applications/jpip/libopenjpip/Makefile.am

@@ -1,151 +0,0 @@
-MAINTAINERCLEANFILES = Makefile.in
-
-includesdir = $(includedir)/openjpeg-$(MAJOR_NR).$(MINOR_NR)
-includes_HEADERS = 
-
-lib_LTLIBRARIES =
-
-if WANT_JPIP
-lib_LTLIBRARIES += libopenjpip_local.la
-endif
-
-if WANT_JPIP_SERVER
-lib_LTLIBRARIES += libopenjpip_server.la
-endif
-
-JPIP_SRC = \
-openjpip.c \
-query_parser.c \
-channel_manager.c \
-session_manager.c \
-jpip_parser.c \
-boxheader_manager.c \
-codestream_manager.c \
-imgreg_manager.c \
-marker_manager.c \
-msgqueue_manager.c \
-box_manager.c \
-faixbox_manager.c \
-index_manager.c \
-metadata_manager.c \
-placeholder_manager.c \
-byte_manager.c \
-ihdrbox_manager.c \
-manfbox_manager.c \
-mhixbox_manager.c \
-target_manager.c \
-cachemodel_manager.c \
-j2kheader_manager.c \
-jp2k_encoder.c \
-sock_manager.c \
-openjpip.h \
-bool.h \
-boxheader_manager.h \
-box_manager.h \
-byte_manager.h \
-codestream_manager.h \
-faixbox_manager.h \
-ihdrbox_manager.h \
-imgreg_manager.h \
-index_manager.h \
-manfbox_manager.h \
-marker_manager.h \
-metadata_manager.h \
-mhixbox_manager.h \
-msgqueue_manager.h \
-placeholder_manager.h \
-target_manager.h \
-cachemodel_manager.h \
-j2kheader_manager.h \
-jp2k_encoder.h \
-query_parser.h \
-channel_manager.h \
-session_manager.h \
-jpip_parser.h \
-jp2k_decoder.h \
-sock_manager.h 
-
-SERVER_SRC = auxtrans_manager.c \
-auxtrans_manager.h
-
-LOCAL_SRC = jp2k_decoder.c \
-imgsock_manager.c \
-jpipstream_manager.c \
-cache_manager.c \
-dec_clientmsg_handler.c \
-imgsock_manager.h \
-jpipstream_manager.h \
-cache_manager.h \
-dec_clientmsg_handler.h
-
-libopenjpip_server_la_CPPFLAGS = \
--I. \
--I$(top_srcdir)/applications/jpip/libopenjpip \
--I$(top_builddir)/applications/jpip/libopenjpip \
-@FCGI_CFLAGS@ \
-@LIBCURL_CFLAGS@ \
--DSERVER
-libopenjpip_server_la_CFLAGS = @THREAD_CFLAGS@
-libopenjpip_server_la_LIBADD = @FCGI_LIBS@ @LIBCURL_LIBS@ @THREAD_LIBS@ -lm
-libopenjpip_server_la_LDFLAGS = -no-undefined -version-info @lt_version@
-libopenjpip_server_la_SOURCES = $(JPIP_SRC) $(SERVER_SRC)
-
-libopenjpip_local_la_CPPFLAGS = \
--I. \
--I$(top_srcdir)/libopenjpeg \
--I$(top_builddir)/libopenjpeg \
--I$(top_srcdir)/applications/jpip/libopenjpip \
--I$(top_builddir)/applications/jpip/libopenjpip \
-@LIBCURL_CFLAGS@
-libopenjpip_local_la_CFLAGS = 
-libopenjpip_local_la_LIBADD = $(top_builddir)/libopenjpeg/libopenjpeg.la -lm
-libopenjpip_local_la_LDFLAGS = -no-undefined -version-info @lt_version@
-libopenjpip_local_la_SOURCES = $(JPIP_SRC) $(LOCAL_SRC)
-
-install-data-hook:
-if WANT_JPIP_SERVER
-	@echo -e " (LA)\t$(libdir)/libopenjpip_server.la" >> $(top_builddir)/report.txt
-if BUILD_SHARED
-	@( $(call solist_s) ) >> $(top_builddir)/report.txt
-endif
-if BUILD_STATIC
-	@echo -e " (A)\t$(base_s)/$(a_s)" >> $(top_builddir)/report.txt
-endif
-endif
-if WANT_JPIP
-	@echo -e " (LA)\t$(libdir)/libopenjpip_local.la" >> $(top_builddir)/report.txt
-if BUILD_SHARED
-	@( $(call solist_c) ) >> $(top_builddir)/report.txt
-endif
-if BUILD_STATIC
-	@echo -e " (A)\t$(base_c)/$(a_c)" >> $(top_builddir)/report.txt
-endif
-endif
-
-solist_s    = $(foreach f, $(dll_s) $(so_s), echo -e ' $(SO_PREFIX)\t$(base_s)/$(f)' ;)
-get_tok_s   = $(shell grep -E "^$(1)=" libopenjpip_server.la | cut -d "'" -f 2)
-base_s      = $(call get_tok_s,libdir)
-so_s        = $(call get_tok_s,library_names)
-a_s         = $(call get_tok_s,old_library)
-
-solist_c    = $(foreach f, $(dll_c) $(so_c), echo -e ' $(SO_PREFIX)\t$(base_c)/$(f)' ;)
-get_tok_c   = $(shell grep -E "^$(1)=" libopenjpip_local.la | cut -d "'" -f 2)
-base_c      = $(call get_tok_c,libdir)
-so_c        = $(call get_tok_c,library_names)
-a_c         = $(call get_tok_c,old_library)
-
-if HAVE_WIN32
-SO_PREFIX = (DLL)
-dll_s     = $(call get_tok_s,dlname)
-dll_c     = $(call get_tok_c,dlname)
-else
-if HAVE_DARWIN
-SO_PREFIX = (DY)
-dll_s     =
-dll_c     =
-else
-SO_PREFIX = (SO)
-dll_s     =
-dll_c     =
-endif
-endif

applications/jpip/libopenjpip/comMakefile.mk

@@ -1,29 +0,0 @@
-ifdef jpipserver
-CFLAGS  = -O3 -Wall -m32 -DSERVER
-LIBNAME = libopenjpip_server.a
-else
-J2KINCDIR = ../../../libopenjpeg
-CFLAGS  = -O3 -Wall  -I$(J2KINCDIR)
-LIBNAME = libopenjpip_local.a
-endif
-
-all: $(LIBNAME)
-
-ifdef jpipserver
-$(LIBNAME): openjpip.o target_manager.o byte_manager.o box_manager.o boxheader_manager.o manfbox_manager.o \
-	mhixbox_manager.o marker_manager.o codestream_manager.o faixbox_manager.o index_manager.o \
-	msgqueue_manager.o metadata_manager.o placeholder_manager.o ihdrbox_manager.o imgreg_manager.o \
-	cachemodel_manager.o j2kheader_manager.o jp2k_encoder.o query_parser.o channel_manager.o \
-	session_manager.o jpip_parser.o sock_manager.o auxtrans_manager.o
-	ar r $@ $^
-else
-$(LIBNAME): openjpip.o target_manager.o byte_manager.o box_manager.o boxheader_manager.o manfbox_manager.o \
-	mhixbox_manager.o marker_manager.o codestream_manager.o faixbox_manager.o index_manager.o \
-	msgqueue_manager.o metadata_manager.o placeholder_manager.o ihdrbox_manager.o imgreg_manager.o \
-	cachemodel_manager.o j2kheader_manager.o jp2k_encoder.o  query_parser.o channel_manager.o \
-	session_manager.o jpip_parser.o jp2k_decoder.o imgsock_manager.o jpipstream_manager.o cache_manager.o \
-	dec_clientmsg_handler.o sock_manager.o
-	ar r $@ $^
-endif
-clean:
-	rm -f $(LIBNAME) *.o *~

applications/jpip/util/CMakeLists.txt

@@ -1,127 +0,0 @@
-# Headers file are located here:
-INCLUDE_DIRECTORIES(
-  ${OPENJPEG_SOURCE_DIR}/applications/jpip/libopenjpip
-  ${FCGI_INCLUDE_DIRS}
-)
-
-IF(BUILD_JPIP_SERVER)
-  
-  SET(OPJ_SERVER_SRCS
-  ${CMAKE_CURRENT_SOURCE_DIR}/opj_server.c
-  )
-  
-  # Build executable
-  ADD_EXECUTABLE(opj_server ${OPJ_SERVER_SRCS})
-  TARGET_LINK_LIBRARIES(opj_server openjpip_server)
-  SET_PROPERTY(
-    TARGET opj_server
-    APPEND PROPERTY
-    COMPILE_DEFINITIONS SERVER QUIT_SIGNAL="quitJPIP"
-    )
-
-  # On unix you need to link to the math library:
-  IF(UNIX)
-    TARGET_LINK_LIBRARIES(opj_server m)
-  ENDIF(UNIX)
-
-  # Install exe
-  INSTALL(TARGETS opj_server
-    EXPORT OpenJPEGTargets
-    DESTINATION ${OPENJPEG_INSTALL_BIN_DIR} COMPONENT Applications
-    )
-ENDIF(BUILD_JPIP_SERVER)
-
-SET(EXES
-  opj_dec_server
-  jpip_to_jp2
-  jpip_to_j2k
-  test_index
-  )
-FOREACH(exe ${EXES})
-  ADD_EXECUTABLE(${exe} ${exe}.c)
-  TARGET_LINK_LIBRARIES(${exe} openjpip_local)
-  INSTALL(TARGETS ${exe}
-    EXPORT OpenJPEGTargets
-    DESTINATION ${OPENJPEG_INSTALL_BIN_DIR} COMPONENT Applications
-    )
-ENDFOREACH(exe)
-
-# Build the two java clients:
-FIND_PACKAGE(Java 1.5 REQUIRED) # javac, jar
-
-# 1. opj_viewer
-# build dep list:
-file(GLOB java1_srcs "opj_viewer/src/*.java")
-
-# make sure target javac dir exists:
-file(MAKE_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/classes1)
-# Build java
-ADD_CUSTOM_COMMAND(
-  OUTPUT ${LIBRARY_OUTPUT_PATH}/opj_viewer.jar
-  COMMAND ${Java_JAVAC_EXECUTABLE} 
-  ${java1_srcs} -d ${CMAKE_CURRENT_BINARY_DIR}/classes1
-  COMMAND ${Java_JAR_EXECUTABLE} cfm ${LIBRARY_OUTPUT_PATH}/opj_viewer.jar
-  ${CMAKE_CURRENT_SOURCE_DIR}/opj_viewer/dist/manifest.txt -C
-  ${CMAKE_CURRENT_BINARY_DIR}/classes1 .
-  DEPENDS ${java1_srcs}
-  ${CMAKE_CURRENT_SOURCE_DIR}/opj_viewer/dist/manifest.txt
-  COMMENT "javac *.java; jar cvf -> opj_viewer.jar"
-)
-
-# name the target
-ADD_CUSTOM_TARGET(OPJViewerJar ALL
-  DEPENDS ${LIBRARY_OUTPUT_PATH}/opj_viewer.jar
-  COMMENT "building opj_viewer.jar"
-)
-
-# 2. opj_viewer_xerces
-# search for package org.apache.xerces.parsers
-find_file(APACHE_XERCES_JAR
-  NAMES xerces-j2.jar xercesImpl.jar
-  PATHS /usr/share/java/
-  NO_DEFAULT_PATH
-  )
-mark_as_advanced(APACHE_XERCES_JAR)
-
-if(EXISTS ${APACHE_XERCES_JAR})
-  configure_file(
-    ${CMAKE_CURRENT_SOURCE_DIR}/opj_viewer_xerces/dist/manifest.txt.in
-    ${CMAKE_CURRENT_BINARY_DIR}/opj_viewer_xerces/dist/manifest.txt
-    @ONLY
-    )
-  # build dep list:
-  file(GLOB java2_srcs "opj_viewer_xerces/src/*.java")
-
-  # Need some common files:
-  list(APPEND java2_srcs
-    ${CMAKE_CURRENT_SOURCE_DIR}/opj_viewer/src/ImageManager.java
-    ${CMAKE_CURRENT_SOURCE_DIR}/opj_viewer/src/ImgdecClient.java
-    ${CMAKE_CURRENT_SOURCE_DIR}/opj_viewer/src/JPIPHttpClient.java
-    ${CMAKE_CURRENT_SOURCE_DIR}/opj_viewer/src/MML.java
-    ${CMAKE_CURRENT_SOURCE_DIR}/opj_viewer/src/PnmImage.java
-    ${CMAKE_CURRENT_SOURCE_DIR}/opj_viewer/src/RegimViewer.java
-    ${CMAKE_CURRENT_SOURCE_DIR}/opj_viewer/src/ResizeListener.java
-    )
-
-  # make sure target javac dir exists:
-  file(MAKE_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/classes2)
-  # Build java
-  ADD_CUSTOM_COMMAND(
-    OUTPUT ${LIBRARY_OUTPUT_PATH}/opj_viewer_xerces.jar
-    COMMAND ${Java_JAVAC_EXECUTABLE} 
-    -classpath ${APACHE_XERCES_JAR}
-    ${java2_srcs} -d ${CMAKE_CURRENT_BINARY_DIR}/classes2
-    COMMAND ${Java_JAR_EXECUTABLE} cfm ${LIBRARY_OUTPUT_PATH}/opj_viewer_xerces.jar
-    ${CMAKE_CURRENT_BINARY_DIR}/opj_viewer_xerces/dist/manifest.txt 
-    -C ${CMAKE_CURRENT_BINARY_DIR}/classes2 .
-    DEPENDS ${java2_srcs}
-    ${CMAKE_CURRENT_SOURCE_DIR}/opj_viewer_xerces/dist/manifest.txt.in
-    COMMENT "javac *.java; jar cvf -> opj_viewer_xerces.jar"
-    )
-
-  # name the target
-  ADD_CUSTOM_TARGET(OPJViewerXercesJar ALL
-    DEPENDS ${LIBRARY_OUTPUT_PATH}/opj_viewer_xerces.jar
-    COMMENT "building opj_viewer_xerces.jar"
-    )
-endif()

applications/jpip/util/Makefile.am

@@ -1,75 +0,0 @@
-MAINTAINERCLEANFILES = Makefile.in
-
-bin_PROGRAMS =
-
-if WANT_JPIP
-bin_PROGRAMS += opj_dec_server test_index jpip_to_j2k jpip_to_jp2
-endif
-
-if WANT_JPIP_SERVER
-bin_PROGRAMS += opj_server
-endif
-
-opj_server_CPPFLAGS = \
-@FCGI_CFLAGS@ \
--I. \
--I$(top_srcdir)/applications/jpip/libopenjpip \
--I$(top_builddir)/applications/jpip/libopenjpip \
--DSERVER \
--DQUIT_SIGNAL=\"quitJPIP\"
-#
-opj_server_LDADD = $(top_builddir)/applications/jpip/libopenjpip/libopenjpip_server.la @FCGI_LIBS@ -lm
-#
-opj_server_SOURCES = opj_server.c
-
-#-------------
-opj_dec_server_CPPFLAGS = \
--I. \
--I$(top_srcdir)/applications/jpip/libopenjpip \
--I$(top_builddir)/applications/jpip/libopenjpip
-#
-opj_dec_server_CFLAGS =
-opj_dec_server_LDADD = $(top_builddir)/applications/jpip/libopenjpip/libopenjpip_local.la
-opj_dec_server_SOURCES = opj_dec_server.c
-
-#-------------
-jpip_to_jp2_CPPFLAGS = \
--I. \
--I$(top_srcdir)/applications/jpip/libopenjpip \
--I$(top_builddir)/applications/jpip/libopenjpip
-#
-jpip_to_jp2_CFLAGS =
-jpip_to_jp2_LDADD = $(top_builddir)/applications/jpip/libopenjpip/libopenjpip_local.la
-jpip_to_jp2_SOURCES = jpip_to_jp2.c
-
-#-------------
-jpip_to_j2k_CPPFLAGS = \
--I. \
--I$(top_srcdir)/applications/jpip/libopenjpip \
--I$(top_builddir)/applications/jpip/libopenjpip
-#
-jpip_to_j2k_CFLAGS =
-jpip_to_j2k_LDADD = $(top_builddir)/applications/jpip/libopenjpip/libopenjpip_local.la
-jpip_to_j2k_SOURCES = jpip_to_j2k.c
-
-#-------------
-test_index_CPPFLAGS = \
--I. \
--I$(top_srcdir)/applications/jpip/libopenjpip \
--I$(top_builddir)/applications/jpip/libopenjpip
-#
-test_index_CFLAGS =
-test_index_LDADD = $(top_builddir)/applications/jpip/libopenjpip/libopenjpip_local.la
-test_index_SOURCES = test_index.c
-
-#-------------
-install-data-hook:
-if WANT_JPIP_SERVER
-	@echo -e " (B)\t$(bindir)/opj_server$(EXEEXT)" >> $(top_builddir)/report.txt
-endif
-if WANT_JPIP
-	@echo -e " (B)\t$(bindir)/opj_dec_server$(EXEEXT)" >> $(top_builddir)/report.txt
-	@echo -e " (B)\t$(bindir)/jpip_to_jp2$(EXEEXT)" >> $(top_builddir)/report.txt
-	@echo -e " (B)\t$(bindir)/jpip_to_j2k$(EXEEXT)" >> $(top_builddir)/report.txt
-	@echo -e " (B)\t$(bindir)/test_index$(EXEEXT)" >> $(top_builddir)/report.txt
-endif

applications/jpip/util/jpip_to_jp2.c

@@ -1,72 +0,0 @@
-/*
- * $Id$
- *
- * Copyright (c) 2002-2011, Communications and Remote Sensing Laboratory, Universite catholique de Louvain (UCL), Belgium
- * Copyright (c) 2002-2011, Professor Benoit Macq
- * Copyright (c) 2010-2011, Kaori Hagihara
- * All rights reserved.
- *
- * Redistribution and use in source and binary forms, with or without
- * modification, are permitted provided that the following conditions
- * are met:
- * 1. Redistributions of source code must retain the above copyright
- *    notice, this list of conditions and the following disclaimer.
- * 2. Redistributions in binary form must reproduce the above copyright
- *    notice, this list of conditions and the following disclaimer in the
- *    documentation and/or other materials provided with the distribution.
- *
- * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS `AS IS'
- * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
- * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
- * ARE DISCLAIMED.  IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
- * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
- * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
- * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
- * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
- * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
- * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
- * POSSIBILITY OF SUCH DAMAGE.
- */
-
-/*! \file
- *  \brief jpip_to_jp2 is a program to convert JPT- JPP- stream to JP2 file
- *
- *  \section impinst Implementing instructions
- *  This program takes two arguments. \n
- *   -# Input JPT or JPP file
- *   -# Output JP2 file\n
- *   % ./jpip_to_jp2 input.jpt output.jp2
- *   or
- *   % ./jpip_to_jp2 input.jpp output.jp2
- */
-
-#include <stdio.h>
-#include "openjpip.h"
-
-int main(int argc,char *argv[])
-{
-  jpip_dec_param_t *dec;
-    
-  if( argc < 3){
-    fprintf( stderr, "Too few arguments:\n");
-    fprintf( stderr, " - input  jpt or jpp file\n");
-    fprintf( stderr, " - output jp2 file\n");
-    return -1;
-  }
-  
-  dec = init_jpipdecoder( true);
-  
-  if(!( fread_jpip( argv[1], dec)))
-    return -1;
-  
-  decode_jpip( dec);
-  
-  if(!(fwrite_jp2k( argv[2], dec)))
-    return -1;
-
-  output_log( true, false, true, dec);
-
-  destroy_jpipdecoder( &dec);
-
-  return 0;
-}

applications/mj2/CMakeLists.txt

@@ -1,93 +0,0 @@
-# Makefile for the MJ2 codecs of the OpenJPEG library: frames_to_mj2, mj2_to_frames, extract_j2k_from_mj2 and wrap_j2k_in_mj2
-
-SET(common_SRCS ${OPENJPEG_SOURCE_DIR}/applications/common/opj_getopt.c)
-
-# While mj2 executables do not use the API correctly, we do not link with the library but rather compile the sources files.
-SET(OPJ_SRCS
-${OPENJPEG_SOURCE_DIR}/libopenjpeg/bio.c
-${OPENJPEG_SOURCE_DIR}/libopenjpeg/cio.c
-${OPENJPEG_SOURCE_DIR}/libopenjpeg/dwt.c
-${OPENJPEG_SOURCE_DIR}/libopenjpeg/event.c
-${OPENJPEG_SOURCE_DIR}/libopenjpeg/image.c
-${OPENJPEG_SOURCE_DIR}/libopenjpeg/j2k.c
-${OPENJPEG_SOURCE_DIR}/libopenjpeg/j2k_lib.c
-${OPENJPEG_SOURCE_DIR}/libopenjpeg/jp2.c
-${OPENJPEG_SOURCE_DIR}/libopenjpeg/jpt.c
-${OPENJPEG_SOURCE_DIR}/libopenjpeg/mct.c
-${OPENJPEG_SOURCE_DIR}/libopenjpeg/mqc.c
-${OPENJPEG_SOURCE_DIR}/libopenjpeg/openjpeg.c
-${OPENJPEG_SOURCE_DIR}/libopenjpeg/pi.c
-${OPENJPEG_SOURCE_DIR}/libopenjpeg/raw.c
-${OPENJPEG_SOURCE_DIR}/libopenjpeg/t1.c
-${OPENJPEG_SOURCE_DIR}/libopenjpeg/t2.c
-${OPENJPEG_SOURCE_DIR}/libopenjpeg/tcd.c
-${OPENJPEG_SOURCE_DIR}/libopenjpeg/tgt.c
-${OPENJPEG_SOURCE_DIR}/libopenjpeg/cidx_manager.c
-${OPENJPEG_SOURCE_DIR}/libopenjpeg/phix_manager.c
-${OPENJPEG_SOURCE_DIR}/libopenjpeg/ppix_manager.c
-${OPENJPEG_SOURCE_DIR}/libopenjpeg/thix_manager.c
-${OPENJPEG_SOURCE_DIR}/libopenjpeg/tpix_manager.c
-)
-
-SET(MJ2_SRCS mj2.c mj2_convert.c)
-
-IF(WIN32)
-  ADD_DEFINITIONS(-DOPJ_STATIC)
-ENDIF(WIN32)
-
-# Headers file are located here:
-INCLUDE_DIRECTORIES(
-  ${OPENJPEG_SOURCE_DIR}/libopenjpeg
-  ${OPENJPEG_SOURCE_DIR}/applications/common
-  ${LCMS_INCLUDE_DIRNAME}
-  )
-
-ADD_EXECUTABLE(frames_to_mj2
-  frames_to_mj2.c
-  ${common_SRCS}
-  ${OPJ_SRCS}
-  ${MJ2_SRCS}
-  )
-TARGET_LINK_LIBRARIES(frames_to_mj2 ${LCMS_LIBNAME})
-
-IF(UNIX)
-  TARGET_LINK_LIBRARIES(frames_to_mj2 m)
-ENDIF(UNIX)
-
-ADD_EXECUTABLE(mj2_to_frames
-    mj2_to_frames.c
-    ${common_SRCS}
-    ${OPJ_SRCS}
-    ${MJ2_SRCS}
-    ${OPENJPEG_SOURCE_DIR}/applications/common/color.c
-    )
-TARGET_LINK_LIBRARIES(mj2_to_frames ${LCMS_LIBNAME})
-
-IF(UNIX)
-  TARGET_LINK_LIBRARIES(mj2_to_frames m)
-ENDIF(UNIX)
-
-ADD_EXECUTABLE(extract_j2k_from_mj2
-    extract_j2k_from_mj2.c
-    ${OPJ_SRCS}
-    ${MJ2_SRCS}
-    )
-TARGET_LINK_LIBRARIES(extract_j2k_from_mj2 ${LCMS_LIBNAME})
-
-IF(UNIX)
-  TARGET_LINK_LIBRARIES(extract_j2k_from_mj2 m)
-ENDIF(UNIX)
-
-ADD_EXECUTABLE(wrap_j2k_in_mj2
-    wrap_j2k_in_mj2.c
-    ${OPJ_SRCS}
-    ${MJ2_SRCS}
-    )
-TARGET_LINK_LIBRARIES(wrap_j2k_in_mj2 ${LCMS_LIBNAME})
-
-IF(UNIX)
-  TARGET_LINK_LIBRARIES(wrap_j2k_in_mj2 m)
-ENDIF(UNIX)
-
-INSTALL(TARGETS frames_to_mj2 mj2_to_frames extract_j2k_from_mj2 wrap_j2k_in_mj2
-	DESTINATION ${OPENJPEG_INSTALL_BIN_DIR})

applications/mj2/Makefile.am

@@ -1,110 +0,0 @@
-MAINTAINERCLEANFILES = Makefile.in
-
-OPJ_SRC = \
-../../libopenjpeg/bio.c \
-../../libopenjpeg/cio.c \
-../../libopenjpeg/dwt.c \
-../../libopenjpeg/event.c \
-../../libopenjpeg/image.c \
-../../libopenjpeg/j2k.c \
-../../libopenjpeg/j2k_lib.c \
-../../libopenjpeg/jp2.c \
-../../libopenjpeg/jpt.c \
-../../libopenjpeg/mct.c \
-../../libopenjpeg/mqc.c \
-../../libopenjpeg/openjpeg.c \
-../../libopenjpeg/pi.c \
-../../libopenjpeg/raw.c \
-../../libopenjpeg/t1.c \
-../../libopenjpeg/t2.c \
-../../libopenjpeg/tcd.c \
-../../libopenjpeg/tgt.c \
-../../libopenjpeg/cidx_manager.c \
-../../libopenjpeg/phix_manager.c \
-../../libopenjpeg/ppix_manager.c \
-../../libopenjpeg/thix_manager.c \
-../../libopenjpeg/tpix_manager.c
-
-bin_PROGRAMS = \
-frames_to_mj2 \
-mj2_to_frames \
-extract_j2k_from_mj2 \
-wrap_j2k_in_mj2
-
-frames_to_mj2_CPPFLAGS = \
--I. \
--I$(top_srcdir)/applications/common \
--I$(top_builddir)/applications/common \
--I$(top_srcdir)/libopenjpeg \
--I$(top_builddir)/libopenjpeg \
--DOPJ_STATIC
-frames_to_mj2_CFLAGS = 
-frames_to_mj2_LDADD = -lm
-frames_to_mj2_SOURCES = \
-$(OPJ_SRC) \
-../common/opj_getopt.c \
-mj2_convert.c \
-mj2.c \
-frames_to_mj2.c \
-mj2.h \
-mj2_convert.h
-
-mj2_to_frames_CPPFLAGS = \
--I. \
--I$(top_srcdir)/applications/common \
--I$(top_builddir)/applications/common \
--I$(top_srcdir)/libopenjpeg \
--I$(top_builddir)/libopenjpeg \
-@LCMS2_CFLAGS@ \
-@LCMS1_CFLAGS@ \
--DOPJ_STATIC
-mj2_to_frames_CFLAGS = 
-mj2_to_frames_LDADD = @LCMS2_LIBS@ @LCMS1_LIBS@ -lm
-mj2_to_frames_SOURCES = \
-$(OPJ_SRC) \
-../common/color.c \
-../common/opj_getopt.c \
-mj2_convert.c \
-mj2.c \
-mj2_to_frames.c \
-mj2.h \
-mj2_convert.h
-
-extract_j2k_from_mj2_CPPFLAGS = \
--I. \
--I$(top_srcdir)/applications/common \
--I$(top_builddir)/applications/common \
--I$(top_srcdir)/libopenjpeg \
--I$(top_builddir)/libopenjpeg \
--DOPJ_STATIC
-extract_j2k_from_mj2_CFLAGS = 
-extract_j2k_from_mj2_LDADD = -lm
-extract_j2k_from_mj2_SOURCES = \
-$(OPJ_SRC) \
-mj2.c \
-extract_j2k_from_mj2.c \
-mj2.h
-
-wrap_j2k_in_mj2_CPPFLAGS = \
--I. \
--I$(top_srcdir)/applications/common \
--I$(top_builddir)/applications/common \
--I$(top_srcdir)/libopenjpeg \
--I$(top_builddir)/libopenjpeg \
--DOPJ_STATIC
-wrap_j2k_in_mj2_CFLAGS = 
-wrap_j2k_in_mj2_LDADD = -lm
-wrap_j2k_in_mj2_SOURCES = \
-$(OPJ_SRC) \
-mj2.c \
-wrap_j2k_in_mj2.c \
-mj2.h
-
-EXTRA_DIST = \
-CMakeLists.txt
-
-install-data-hook:
-	@echo -e " (B)\t$(bindir)/frames_to_mj2$(EXEEXT)" >> $(top_builddir)/report.txt
-	@echo -e " (B)\t$(bindir)/mj2_to_frames$(EXEEXT)" >> $(top_builddir)/report.txt
-	@echo -e " (B)\t$(bindir)/extract_j2k_from_mj2$(EXEEXT)" >> $(top_builddir)/report.txt
-	@echo -e " (B)\t$(bindir)/wrap_j2k_in_mj2$(EXEEXT)" >> $(top_builddir)/report.txt

bootstrap.sh

@@ -1,3 +0,0 @@
-#!/bin/sh
-autoreconf --install --force
-

cmake/CTestCustom.cmake.in

@@ -8,11 +8,11 @@
 #
 #----------------------------------------------------------------------
 
-SET(CTEST_CUSTOM_MAXIMUM_PASSED_TEST_OUTPUT_SIZE 1000000)
-SET(CTEST_CUSTOM_MAXIMUM_NUMBER_OF_ERRORS   50)
-SET(CTEST_CUSTOM_MAXIMUM_NUMBER_OF_WARNINGS 2000)
+set(CTEST_CUSTOM_MAXIMUM_PASSED_TEST_OUTPUT_SIZE 1000000)
+set(CTEST_CUSTOM_MAXIMUM_NUMBER_OF_ERRORS   50)
+set(CTEST_CUSTOM_MAXIMUM_NUMBER_OF_WARNINGS 2000)
 
-SET(CTEST_CUSTOM_COVERAGE_EXCLUDE
+set(CTEST_CUSTOM_COVERAGE_EXCLUDE
   ${CTEST_CUSTOM_COVERAGE_EXCLUDE}
 
   # Exclude files from the Testing directories
@@ -22,11 +22,16 @@ SET(CTEST_CUSTOM_COVERAGE_EXCLUDE
   ".*/thirdparty/.*"
   )
 
-SET(CTEST_CUSTOM_WARNING_EXCEPTION
+set(CTEST_CUSTOM_WARNING_EXCEPTION
   ${CTEST_CUSTOM_WARNING_EXCEPTION}
 
   # Suppress warning caused by intentional messages about deprecation
   ".*warning,.* is deprecated"
+  # java also warns about deprecated API
+  ".*java.*deprecation"
+  ".*deprecation.*"
   # supress warnings caused by 3rd party libs:
-  ".*/thirdparty/.*"
+  ".*thirdparty.*"
+  "libtiff.*has no symbols"
+  "libpng.*has no symbols"
   )

cmake/EnsureFileInclude.cmake

@@ -0,0 +1,26 @@
+# Ensure that an include file is provided by the system
+# Add the check about the mandatory status to the check_include_file macro 
+# provided by cmake
+
+include (${CMAKE_ROOT}/Modules/CheckIncludeFile.cmake)
+
+macro(ensure_file_include INCLUDE_FILENAME VARIABLE_NAME MANDATORY_STATUS)
+
+#message(WARNING "INCLUDE_FILENAME=${INCLUDE_FILENAME} \n"
+#                "VARIABLE_NAME=${VARIABLE_NAME} \n"
+#                "MANDATORY_STATUS=${MANDATORY_STATUS}")
+
+CHECK_INCLUDE_FILE(${INCLUDE_FILENAME} ${VARIABLE_NAME})
+
+#message(WARNING "INCLUDE_FILENAME=${INCLUDE_FILENAME} \n"
+#                "VARIABLE_NAME=${VARIABLE_NAME} \n"
+#                "VARIABLE_NAME_VALUE=${${VARIABLE_NAME}} \n"
+#                "MANDATORY_STATUS=${MANDATORY_STATUS}")
+
+if (NOT ${${VARIABLE_NAME}})
+  if (${MANDATORY_STATUS})
+    message(FATAL_ERROR "The file ${INCLUDE_FILENAME} is mandatory but not found on your system")
+  endif()
+endif()
+
+endmacro()

cmake/FindCPPCHECK.cmake

@@ -0,0 +1,16 @@
+# cppcheck
+#
+#  Copyright (c) 2011 Mathieu Malaterre <mathieu.malaterre@gmail.com>
+#
+#  Redistribution and use is allowed according to the terms of the New
+#  BSD license.
+#  For details see the accompanying COPYING-CMAKE-SCRIPTS file.
+#
+
+find_program(CPPCHECK_EXECUTABLE
+  cppcheck
+  )
+
+mark_as_advanced(
+  CPPCHECK_EXECUTABLE
+  )

cmake/FindFCGI.cmake

@@ -0,0 +1,20 @@
+# Look for the header file.
+find_path(FCGI_INCLUDE_DIR NAMES fastcgi.h)
+
+# Look for the library.
+find_library(FCGI_LIBRARY NAMES fcgi)
+
+# Handle the QUIETLY and REQUIRED arguments and set FCGI_FOUND to TRUE if all listed variables are TRUE.
+include(FindPackageHandleStandardArgs)
+FIND_PACKAGE_HANDLE_STANDARD_ARGS(FCGI DEFAULT_MSG FCGI_LIBRARY FCGI_INCLUDE_DIR)
+
+# Copy the results to the output variables.
+if(FCGI_FOUND)
+	set(FCGI_LIBRARIES ${FCGI_LIBRARY})
+	set(FCGI_INCLUDE_DIRS ${FCGI_INCLUDE_DIR})
+else()
+	set(FCGI_LIBRARIES)
+	set(FCGI_INCLUDE_DIRS)
+endif()
+
+mark_as_advanced(FCGI_INCLUDE_DIR FCGI_LIBRARY)

cmake/FindKAKADU.cmake

@@ -1,19 +1,24 @@
 #
-# this module looks for KAKADu
+# this module looks for KAKADU
 # http://www.kakadusoftware.com/
 #
 #
-#  Copyright (c) 2006-2011 Mathieu Malaterre <mathieu.malaterre@gmail.com>
+#  Copyright (c) 2006-2014 Mathieu Malaterre <mathieu.malaterre@gmail.com>
 #
 #  Redistribution and use is allowed according to the terms of the New
 #  BSD license.
 #  For details see the accompanying COPYING-CMAKE-SCRIPTS file.
 #
 
-FIND_PROGRAM(KDU_EXPAND_EXECUTABLE
+find_program(KDU_EXPAND_EXECUTABLE
   kdu_expand
   )
 
-MARK_AS_ADVANCED(
-  KDU_EXPAND_EXECUTABLE
+find_program(KDU_COMPRESS_EXECUTABLE
+  kdu_compress
+  )
+
+mark_as_advanced(
+  KDU_EXPAND_EXECUTABLE
+  KDU_COMPRESS_EXECUTABLE
   )

cmake/FindLCMS.cmake

@@ -12,20 +12,20 @@
 #=============================================================================
 #=============================================================================
 
-FIND_PATH(LCMS_INCLUDE_DIR lcms.h  PATHS /usr/include /usr/local/include /opt/include /opt/local/include)
+find_path(LCMS_INCLUDE_DIR lcms.h  PATHS /usr/include /usr/local/include /opt/include /opt/local/include)
 
-SET(LCMS_NAMES ${LCMS_NAMES} lcms liblcms liblcms_static)
+set(LCMS_NAMES ${LCMS_NAMES} lcms liblcms liblcms_static)
 
-FIND_LIBRARY(LCMS_LIBRARY NAMES ${LCMS_NAMES} )
+find_library(LCMS_LIBRARY NAMES ${LCMS_NAMES} )
 
-MARK_AS_ADVANCED(LCMS_INCLUDE_DIR LCMS_LIBRARY)
+mark_as_advanced(LCMS_INCLUDE_DIR LCMS_LIBRARY)
 
 # handle the QUIETLY and REQUIRED arguments and set LCMS_FOUND to TRUE if
 # all listed variables are TRUE
-INCLUDE(FindPackageHandleStandardArgs)
+include(FindPackageHandleStandardArgs)
 FIND_PACKAGE_HANDLE_STANDARD_ARGS(LCMS  DEFAULT_MSG  LCMS_LIBRARY  LCMS_INCLUDE_DIR)
 
-IF(LCMS_FOUND)
-  SET( LCMS_INCLUDE_DIRS ${LCMS_INCLUDE_DIR})
-  SET( LCMS_LIBRARIES ${LCMS_LIBRARY} )
-ENDIF(LCMS_FOUND)
+if(LCMS_FOUND)
+  set( LCMS_INCLUDE_DIRS ${LCMS_INCLUDE_DIR})
+  set( LCMS_LIBRARIES ${LCMS_LIBRARY} )
+endif()

cmake/FindLCMS2.cmake

@@ -12,20 +12,20 @@
 #=============================================================================
 #=============================================================================
 
-FIND_PATH(LCMS2_INCLUDE_DIR lcms2.h PATHS /usr/include /usr/local/include /opt/include /opt/local/include)
+find_path(LCMS2_INCLUDE_DIR lcms2.h PATHS /usr/include /usr/local/include /opt/include /opt/local/include)
 
-SET(LCMS2_NAMES ${LCMS2_NAMES} lcms2 liblcms2 liblcms2_static)
+set(LCMS2_NAMES ${LCMS2_NAMES} lcms2 liblcms2 liblcms2_static)
 
-FIND_LIBRARY(LCMS2_LIBRARY NAMES ${LCMS2_NAMES} )
+find_library(LCMS2_LIBRARY NAMES ${LCMS2_NAMES} )
 
-MARK_AS_ADVANCED(LCMS2_INCLUDE_DIR LCMS2_LIBRARY)
+mark_as_advanced(LCMS2_INCLUDE_DIR LCMS2_LIBRARY)
 
-# handle the QUIETLY and REQUIRED arguments and set LCMS2_FOUND to TRUE if 
+# handle the QUIETLY and REQUIRED arguments and set LCMS2_FOUND to TRUE if
 # all listed variables are TRUE
-INCLUDE(FindPackageHandleStandardArgs)
+include(FindPackageHandleStandardArgs)
 FIND_PACKAGE_HANDLE_STANDARD_ARGS(LCMS2  DEFAULT_MSG  LCMS2_LIBRARY  LCMS2_INCLUDE_DIR)
 
-IF(LCMS2_FOUND)
-  SET( LCMS2_INCLUDE_DIRS ${LCMS2_INCLUDE_DIR})
-  SET( LCMS2_LIBRARIES ${LCMS2_LIBRARY} )
-ENDIF(LCMS2_FOUND)
+if(LCMS2_FOUND)
+  set( LCMS2_INCLUDE_DIRS ${LCMS2_INCLUDE_DIR})
+  set( LCMS2_LIBRARIES ${LCMS2_LIBRARY} )
+endif()

cmake/OpenJPEGCPack.cmake

@@ -7,7 +7,7 @@ if(EXISTS "${CMAKE_ROOT}/Modules/CPack.cmake")
       set(CMAKE_INSTALL_SYSTEM_RUNTIME_LIBS_NO_WARNINGS ON)
     endif()
     include(${CMAKE_ROOT}/Modules/InstallRequiredSystemLibraries.cmake)
-  endif(EXISTS "${CMAKE_ROOT}/Modules/InstallRequiredSystemLibraries.cmake")
+  endif()
 
   set(OPJ_PACKAGE_DESCRIPTION_SUMMARY "OpenJPEG - OpenJPEG a JPEG 2000 implementation.")
   set(OPJ_PACKAGE_CONTACT "openjpeg users <openjpeg@googlegroups.com>")
@@ -28,43 +28,45 @@ if(EXISTS "${CMAKE_ROOT}/Modules/CPack.cmake")
 
   # Make this explicit here, rather than accepting the CPack default value,
   # so we can refer to it:
-  SET(CPACK_PACKAGE_NAME "${OPENJPEG_LIBRARY_NAME}")
+  set(CPACK_PACKAGE_NAME "${OPENJPEG_LIBRARY_NAME}")
 
-  IF(NOT DEFINED CPACK_SYSTEM_NAME)
+  if(NOT DEFINED CPACK_SYSTEM_NAME)
     # make sure package is not Cygwin-unknown, for Cygwin just
     # cygwin is good for the system name
-    IF("${CMAKE_SYSTEM_NAME}" STREQUAL "CYGWIN")
-      SET(CPACK_SYSTEM_NAME Cygwin)
-    ELSE("${CMAKE_SYSTEM_NAME}" STREQUAL "CYGWIN")
-      SET(CPACK_SYSTEM_NAME ${CMAKE_SYSTEM_NAME}-${CMAKE_SYSTEM_PROCESSOR})
-    ENDIF("${CMAKE_SYSTEM_NAME}" STREQUAL "CYGWIN")
-  ENDIF(NOT DEFINED CPACK_SYSTEM_NAME)
-  IF(${CPACK_SYSTEM_NAME} MATCHES Windows)
-    IF(CMAKE_CL_64)
-      SET(CPACK_SYSTEM_NAME win64-x64)
-    ELSE(CMAKE_CL_64)
-      SET(CPACK_SYSTEM_NAME win32-x86)
-    ENDIF(CMAKE_CL_64)
-  ENDIF(${CPACK_SYSTEM_NAME} MATCHES Windows)
+    if("${CMAKE_SYSTEM_NAME}" STREQUAL "CYGWIN")
+      set(CPACK_SYSTEM_NAME Cygwin)
+    else()
+      set(CPACK_SYSTEM_NAME ${CMAKE_SYSTEM_NAME}-${CMAKE_SYSTEM_PROCESSOR})
+    endif()
+  endif()
+  if(${CPACK_SYSTEM_NAME} MATCHES Windows)
+    if(CMAKE_CL_64)
+      set(CPACK_SYSTEM_NAME win64-x64)
+    else()
+      set(CPACK_SYSTEM_NAME win32-x86)
+    endif()
+  endif()
 
-  IF(NOT DEFINED CPACK_PACKAGE_FILE_NAME)
+  if(NOT DEFINED CPACK_PACKAGE_FILE_NAME)
     # if the CPACK_PACKAGE_FILE_NAME is not defined by the cache
-    # default to source package - system, on cygwin system is not 
+    # default to source package - system, on cygwin system is not
     # needed
-    IF(CYGWIN)
-      SET(CPACK_PACKAGE_FILE_NAME "${CPACK_SOURCE_PACKAGE_FILE_NAME}")
-    ELSE(CYGWIN)
-      SET(CPACK_PACKAGE_FILE_NAME 
+    if(CYGWIN)
+      set(CPACK_PACKAGE_FILE_NAME "${CPACK_SOURCE_PACKAGE_FILE_NAME}")
+    else()
+      set(CPACK_PACKAGE_FILE_NAME
         "${CPACK_SOURCE_PACKAGE_FILE_NAME}-${CPACK_SYSTEM_NAME}")
-    ENDIF(CYGWIN)
-  ENDIF(NOT DEFINED CPACK_PACKAGE_FILE_NAME)
+    endif()
+  endif()
 
   set(CPACK_BUNDLE_NAME "OpenJPEG ${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}")
-  configure_file(${CMAKE_ROOT}/Templates/AppleInfo.plist
-    ${CMAKE_CURRENT_BINARY_DIR}/opj.plist)
-  SET(CPACK_BUNDLE_PLIST
-    ${CMAKE_CURRENT_BINARY_DIR}/opj.plist)
-  #include(BundleUtilities)
+  if(APPLE)
+    configure_file(${CMAKE_ROOT}/Templates/AppleInfo.plist
+      ${CMAKE_CURRENT_BINARY_DIR}/opj.plist)
+    set(CPACK_BUNDLE_PLIST
+      ${CMAKE_CURRENT_BINARY_DIR}/opj.plist)
+    #include(BundleUtilities)
+  endif()
 
   include(CPack)
 endiF(EXISTS "${CMAKE_ROOT}/Modules/CPack.cmake")

cmake/OpenJPEGConfig.cmake.in

@@ -6,21 +6,21 @@
 # module to load OPENJPEG's settings for an external project.
 @OPENJPEG_CONFIG_INSTALL_ONLY@
 # The OPENJPEG version number.
-SET(OPENJPEG_MAJOR_VERSION "@OPENJPEG_VERSION_MAJOR@")
-SET(OPENJPEG_MINOR_VERSION "@OPENJPEG_VERSION_MINOR@")
-SET(OPENJPEG_BUILD_VERSION "@OPENJPEG_VERSION_BUILD@")
+set(OPENJPEG_MAJOR_VERSION "@OPENJPEG_VERSION_MAJOR@")
+set(OPENJPEG_MINOR_VERSION "@OPENJPEG_VERSION_MINOR@")
+set(OPENJPEG_BUILD_VERSION "@OPENJPEG_VERSION_BUILD@")
 
 # The libraries.
-SET(OPENJPEG_LIBRARIES "@OPENJPEG_LIBRARIES@")
+set(OPENJPEG_LIBRARIES "@OPENJPEG_LIBRARY_NAME@")
 
 # The CMake macros dir.
-SET(OPENJPEG_CMAKE_DIR "@OPENJPEG_CMAKE_DIR_CONFIG@")
+set(OPENJPEG_CMAKE_DIR "@OPENJPEG_INSTALL_PACKAGE_DIR@")
 
 # The configuration options.
-SET(OPENJPEG_BUILD_SHARED_LIBS "@OPENJPEG_BUILD_SHARED_LIBS@")
+set(OPENJPEG_BUILD_SHARED_LIBS "@BUILD_SHARED_LIBS@")
 
 # The "use" file.
-SET(OPENJPEG_USE_FILE "@OPENJPEG_USE_FILE_CONFIG@")
+set(OPENJPEG_USE_FILE "@OPENJPEG_USE_FILE_CONFIG@")
 
 get_filename_component(SELF_DIR "${CMAKE_CURRENT_LIST_FILE}" PATH)
 if(EXISTS ${SELF_DIR}/OpenJPEGTargets.cmake)
@@ -29,20 +29,20 @@ if(EXISTS ${SELF_DIR}/OpenJPEGTargets.cmake)
   get_filename_component(OPENJPEG_INCLUDE_ROOT "${SELF_DIR}/../../@OPENJPEG_INSTALL_INCLUDE_DIR@" ABSOLUTE)
   set(OPENJPEG_INCLUDE_DIRS ${OPENJPEG_INCLUDE_ROOT})
 
-else(EXISTS ${SELF_DIR}/OpenJPEGTargets.cmake)
+else()
   if(EXISTS ${SELF_DIR}/OpenJPEGExports.cmake)
     # This is a build tree
-    SET( OPENJPEG_INCLUDE_DIRS @OPENJPEG_INCLUDE_PATH@)
+    set( OPENJPEG_INCLUDE_DIRS @OPENJPEG_INCLUDE_PATH@)
 
     include(${SELF_DIR}/OpenJPEGExports.cmake)
 
-  else(EXISTS ${SELF_DIR}/OpenJPEGExports.cmake)
+  else()
     message(FATAL_ERROR "ooops")
-  endif(EXISTS ${SELF_DIR}/OpenJPEGExports.cmake)
-endif(EXISTS ${SELF_DIR}/OpenJPEGTargets.cmake)
+  endif()
+endif()
 
 set(OPENJPEG_USE_FILE ${SELF_DIR}/UseOPENJPEG.cmake)
 
 # Backward compatible part:
-SET(OPENJPEG_FOUND       TRUE)
+set(OPENJPEG_FOUND       TRUE)
 

cmake/TestFileOffsetBits.c

@@ -0,0 +1,11 @@
+#include <sys/types.h>
+
+/* Cause a compile-time error if off_t is smaller than 64 bits */
+#define LARGE_OFF_T (((off_t) 1 << 62) - 1 + ((off_t) 1 << 62))
+int off_t_is_large[ (LARGE_OFF_T % 2147483629 == 721 && LARGE_OFF_T % 2147483647 == 1) ? 1 : -1 ];  
+
+int main(int argc, char **argv)
+{
+  return 0;
+}
+

cmake/TestLargeFiles.c.cmake.in

@@ -0,0 +1,23 @@
+#cmakedefine _LARGEFILE_SOURCE
+#cmakedefine _LARGE_FILES
+#cmakedefine _FILE_OFFSET_BITS @_FILE_OFFSET_BITS@
+
+#include <sys/types.h>
+#include <stdio.h>
+#include <stdlib.h>
+
+int main(int argc, char **argv)
+{
+  /* Cause a compile-time error if off_t is smaller than 64 bits,
+   * and make sure we have ftello / fseeko.
+   */
+#define LARGE_OFF_T (((off_t) 1 << 62) - 1 + ((off_t) 1 << 62))
+  int off_t_is_large[ (LARGE_OFF_T % 2147483629 == 721 && LARGE_OFF_T % 2147483647 == 1) ? 1 : -1 ];
+  FILE *fp = fopen(argv[0],"r");
+  off_t offset = ftello( fp );
+
+  fseeko( fp, offset, SEEK_CUR );
+  fclose(fp);
+  return 0;
+}
+

cmake/TestLargeFiles.cmake

@@ -0,0 +1,134 @@
+# - Define macro to check large file support
+#
+#  OPJ_TEST_LARGE_FILES(VARIABLE)
+#
+#  VARIABLE will be set to true if off_t is 64 bits, and fseeko/ftello present.
+#  This macro will also defines the necessary variable enable large file support, for instance
+#  _LARGE_FILES
+#  _LARGEFILE_SOURCE
+#  _FILE_OFFSET_BITS 64
+#  OPJ_HAVE_FSEEKO
+#
+#  However, it is YOUR job to make sure these defines are set in a #cmakedefine so they
+#  end up in a config.h file that is included in your source if necessary!
+#
+#  Adapted from Gromacs project (http://www.gromacs.org/)
+#  by Julien Malik
+#
+
+macro(OPJ_TEST_LARGE_FILES VARIABLE)
+    if("${VARIABLE}" MATCHES "^${VARIABLE}$")
+
+        # On most platforms it is probably overkill to first test the flags for 64-bit off_t,
+        # and then separately fseeko. However, in the future we might have 128-bit filesystems
+        # (ZFS), so it might be dangerous to indiscriminately set e.g. _FILE_OFFSET_BITS=64.
+
+        message(STATUS "Checking for 64-bit off_t")
+
+        # First check without any special flags
+        try_compile(FILE64_OK "${PROJECT_BINARY_DIR}"
+                    "${PROJECT_SOURCE_DIR}/cmake/TestFileOffsetBits.c")
+        if(FILE64_OK)
+          message(STATUS "Checking for 64-bit off_t - present")
+       	endif()
+
+        if(NOT FILE64_OK)
+            # Test with _FILE_OFFSET_BITS=64
+            try_compile(FILE64_OK "${PROJECT_BINARY_DIR}"
+                        "${PROJECT_SOURCE_DIR}/cmake/TestFileOffsetBits.c"
+                        COMPILE_DEFINITIONS "-D_FILE_OFFSET_BITS=64" )
+            if(FILE64_OK)
+                message(STATUS "Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64")
+                set(_FILE_OFFSET_BITS 64)
+            endif()
+        endif()
+
+        if(NOT FILE64_OK)
+            # Test with _LARGE_FILES
+            try_compile(FILE64_OK "${PROJECT_BINARY_DIR}"
+                        "${PROJECT_SOURCE_DIR}/cmake/TestFileOffsetBits.c"
+                        COMPILE_DEFINITIONS "-D_LARGE_FILES" )
+            if(FILE64_OK)
+                message(STATUS "Checking for 64-bit off_t - present with _LARGE_FILES")
+                set(_LARGE_FILES 1)
+            endif()
+        endif()
+	
+        if(NOT FILE64_OK)
+            # Test with _LARGEFILE_SOURCE
+            try_compile(FILE64_OK "${PROJECT_BINARY_DIR}"
+                        "${PROJECT_SOURCE_DIR}/cmake/TestFileOffsetBits.c"
+                        COMPILE_DEFINITIONS "-D_LARGEFILE_SOURCE" )
+            if(FILE64_OK)
+                message(STATUS "Checking for 64-bit off_t - present with _LARGEFILE_SOURCE")
+                set(_LARGEFILE_SOURCE 1)
+            endif()
+        endif()
+
+
+        #if(NOT FILE64_OK)
+        #    # now check for Windows stuff
+        #    try_compile(FILE64_OK "${PROJECT_BINARY_DIR}"
+        #                "${PROJECT_SOURCE_DIR}/cmake/TestWindowsFSeek.c")
+        #    if(FILE64_OK)
+        #        message(STATUS "Checking for 64-bit off_t - present with _fseeki64")
+        #        set(HAVE__FSEEKI64 1)
+        #    endif()
+        #endif()
+
+        if(NOT FILE64_OK)
+            message(STATUS "Checking for 64-bit off_t - not present")
+        endif()
+
+        set(_FILE_OFFSET_BITS ${_FILE_OFFSET_BITS} CACHE INTERNAL "Result of test for needed _FILE_OFFSET_BITS=64")
+        set(_LARGE_FILES      ${_LARGE_FILES}      CACHE INTERNAL "Result of test for needed _LARGE_FILES")
+        set(_LARGEFILE_SOURCE ${_LARGEFILE_SOURCE} CACHE INTERNAL "Result of test for needed _LARGEFILE_SOURCE")
+
+        # Set the flags we might have determined to be required above
+        configure_file("${PROJECT_SOURCE_DIR}/cmake/TestLargeFiles.c.cmake.in"
+                       "${PROJECT_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/TestLargeFiles.c")
+
+        message(STATUS "Checking for fseeko/ftello")
+
+	    # Test if ftello/fseeko are	available
+	    try_compile(FSEEKO_COMPILE_OK
+	                "${PROJECT_BINARY_DIR}"
+                    "${PROJECT_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/TestLargeFiles.c")
+	
+	    if(FSEEKO_COMPILE_OK)
+            message(STATUS "Checking for fseeko/ftello - present")
+        endif()
+
+        if(NOT FSEEKO_COMPILE_OK)
+                # glibc 2.2 needs _LARGEFILE_SOURCE for fseeko (but not for 64-bit off_t...)
+                try_compile(FSEEKO_COMPILE_OK
+                            "${PROJECT_BINARY_DIR}"
+                            "${PROJECT_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/TestLargeFiles.c"
+                            COMPILE_DEFINITIONS "-D_LARGEFILE_SOURCE" )
+
+                if(FSEEKO_COMPILE_OK)
+                    message(STATUS "Checking for fseeko/ftello - present with _LARGEFILE_SOURCE")
+                    set(_LARGEFILE_SOURCE ${_LARGEFILE_SOURCE} CACHE INTERNAL "Result of test for needed _LARGEFILE_SOURCE")
+                endif()
+        endif()
+
+	    if(FSEEKO_COMPILE_OK)
+                set(OPJ_HAVE_FSEEKO ON CACHE INTERNAL "Result of test for fseeko/ftello")
+        else()
+                message(STATUS "Checking for fseeko/ftello - not found")
+                set(OPJ_HAVE_FSEEKO OFF CACHE INTERNAL "Result of test for fseeko/ftello")
+        endif()
+
+	    if(FILE64_OK AND FSEEKO_COMPILE_OK)
+                message(STATUS "Large File support - found")
+                set(${VARIABLE} ON CACHE INTERNAL "Result of test for large file support")
+        else()
+                message(STATUS "Large File support - not found")
+                set(${VARIABLE} OFF CACHE INTERNAL "Result of test for large file support")
+        endif()
+
+    endif()
+endmacro()
+
+
+

cmake/TestWindowsFSeek.c

@@ -0,0 +1,11 @@
+
+#include <stdio.h>
+    
+int main()
+{
+  __int64 off=0;
+
+  _fseeki64(NULL, off, SEEK_SET);
+        
+  return 0;
+}

cmake/openjpeg_valgrind.supp

@@ -0,0 +1,39 @@
+
+
+{
+   <Appears with libpng uses with Ubuntu10.04 (hulk)>
+   Memcheck:Cond
+   fun:deflate
+   obj:/lib/libpng12.so.0.42.0
+   obj:/lib/libpng12.so.0.42.0
+   obj:/lib/libpng12.so.0.42.0
+   fun:png_write_row
+   fun:imagetopng
+   fun:main
+}
+{
+   <Appears with libpng uses with Ubuntu10.04 (hulk)>
+   Memcheck:Value8
+   fun:crc32
+   obj:/lib/libpng12.so.0.42.0
+   fun:png_write_chunk
+   obj:/lib/libpng12.so.0.42.0
+   obj:/lib/libpng12.so.0.42.0
+   obj:/lib/libpng12.so.0.42.0
+   obj:/lib/libpng12.so.0.42.0
+   fun:png_write_row
+   fun:imagetopng
+   fun:main
+}
+{
+   <Appears with libpng uses with Ubuntu10.04 (hulk)>
+   Memcheck:Param
+   write(buf)
+   fun:__write_nocancel
+   fun:_IO_file_write@@GLIBC_2.2.5
+   fun:_IO_do_write@@GLIBC_2.2.5
+   fun:_IO_file_close_it@@GLIBC_2.2.5
+   fun:fclose@@GLIBC_2.2.5
+   fun:imagetopng
+   fun:main
+}

configure.ac

@@ -1,540 +0,0 @@
-
-# According to http://www.gnu.org/software/libtool/manual/libtool.html#Updating-version-info :
-#
-# 1) when bugs are fixed or internal code is changed: increase MICRO
-# 2) if API is added, increase MINOR and set MICRO to 0
-# 3) if API or ABI is broken (this case should (must) never happen as it's very bad for a library), or a new designed library, increase MAJOR and set MINOR and MICRO to 0
-
-m4_define([OPJ_MAJOR], [1])
-m4_define([OPJ_MINOR], [5])
-m4_define([OPJ_MICRO], [0])
-
-m4_define([lt_cur], m4_eval(OPJ_MAJOR + OPJ_MINOR))
-m4_define([lt_rev], OPJ_MICRO)
-m4_define([lt_age], OPJ_MINOR)
-
-AC_PREREQ([2.62])
-AC_INIT([OpenJPEG],
-   [OPJ_MAJOR.OPJ_MINOR.OPJ_MICRO],
-   [openjpeg@googlegroups.com],
-   [openjpeg],
-   [http://www.openjpeg.org])
-AC_CONFIG_SRCDIR([configure.ac])
-AC_CONFIG_MACRO_DIR([m4])
-AC_CONFIG_HEADERS([opj_config.h])
-
-AC_CANONICAL_SYSTEM
-AC_CANONICAL_HOST
-
-AM_INIT_AUTOMAKE([1.11 foreign dist-bzip2 dist-xz dist-zip])
-m4_ifdef([AM_SILENT_RULES], [AM_SILENT_RULES([yes])])
-
-MAJOR_NR=OPJ_MAJOR
-MINOR_NR=OPJ_MINOR
-MICRO_NR=OPJ_MICRO
-AC_SUBST([MAJOR_NR])
-AC_SUBST([MINOR_NR])
-AC_SUBST([MICRO_NR])
-
-LT_PREREQ([2.0])
-LT_INIT([win32-dll])
-
-lt_version=lt_cur:lt_rev:lt_age
-AC_SUBST([lt_version])
-
-
-### Needed information
-
-have_win32=no
-have_darwin="no"
-case "$host_os" in
-   mingw*)
-      have_win32="yes"
-      ;;
-   darwin*)
-      have_darwin="yes"
-      ;;
-esac
-
-AM_CONDITIONAL([HAVE_WIN32], [test "x${have_win32}" = "xyes"])
-AM_CONDITIONAL([HAVE_DARWIN], [test "x${have_darwin}" = "xyes"])
-
-
-### Additional options to configure
-
-# debug
-
-AC_ARG_ENABLE([debug],
-   [AC_HELP_STRING([--enable-debug], [build with debug symbols @<:@default=disabled@:>@])],
-   [
-    if test "x${enableval}" = "xyes" ; then
-       want_debug="yes"
-    else
-       want_debug="no"
-    fi
-   ],
-   [want_debug="no"])
-
-AC_MSG_CHECKING([whether to build in debug mode])
-AC_MSG_RESULT([${want_debug}])
-
-# MJ2
-
-AC_ARG_ENABLE([mj2],
-   [AC_HELP_STRING([--enable-mj2], [build mj2 binaries @<:@default=disabled@:>@])],
-   [
-    if test "x${enableval}" = "xyes" ; then
-       want_mj2="yes"
-    else
-       want_mj2="no"
-    fi
-   ],
-   [want_mj2="no"])
-
-AC_MSG_CHECKING([whether to build the MJ2 binaries])
-AC_MSG_RESULT([${want_mj2}])
-
-if test "x${want_mj2}" = "xyes" ; then
-   AC_DEFINE(USE_MJ2, [1], [define to 1 if you use mj2])
-fi
-
-AM_CONDITIONAL([WANT_MJ2], [test "x${want_mj2}" = "xyes"])
-
-# JPWL
-
-AC_ARG_ENABLE([jpwl],
-   [AC_HELP_STRING([--enable-jpwl], [build JPWL library @<:@default=disabled@:>@])],
-   [
-    if test "x${enableval}" = "xyes" ; then
-       want_jpwl="yes"
-    else
-       want_jpwl="no"
-    fi
-   ],
-   [want_jpwl="no"])
-
-AC_MSG_CHECKING([whether to build the JPWL library])
-AC_MSG_RESULT([${want_jpwl}])
-
-AM_CONDITIONAL([WANT_JPWL], [test "x${want_jpwl}" = "xyes"])
-
-# JPIP
-
-AC_ARG_ENABLE([jpip],
-   [AC_HELP_STRING([--enable-jpip], [build jpip library @<:@default=disabled@:>@])],
-   [
-    if test "x${enableval}" = "xyes" ; then
-       want_jpip="yes"
-    else
-       want_jpip="no"
-    fi
-   ],
-   [want_jpip="no"])
-
-AC_MSG_CHECKING([whether to build the JPIP library])
-AC_MSG_RESULT([${want_jpip}])
-
-AC_ARG_ENABLE([jpip-server],
-   [AC_HELP_STRING([--enable-jpip-server], [build jpip server @<:@default=disabled@:>@])],
-   [
-    if test "x${enableval}" = "xyes" ; then
-       want_jpip_server="yes"
-    else
-       want_jpip_server="no"
-    fi
-   ],
-   [want_jpip_server="no"])
-
-AC_MSG_CHECKING([whether to build the JPIP server])
-AC_MSG_RESULT([${want_jpip_server}])
-
-
-### Checks for programs
-
-AC_PROG_CC
-
-# pkg-config
-
-PKG_PROG_PKG_CONFIG
-
-# Check whether pkg-config supports Requires.private
-if $PKG_CONFIG --atleast-pkgconfig-version 0.22 ; then
-   pkgconfig_requires_private="Requires.private"
-else
-   pkgconfig_requires_private="Requires"
-fi
-AC_SUBST([pkgconfig_requires_private])
-AC_SUBST([requirements])
-
-# doxygen
-
-OPJ_CHECK_DOXYGEN
-
-#  ln -s
-
-AC_PROG_LN_S
-
-
-### Checks for libraries
-
-# libpng
-
-have_libpng="no"
-
-AC_ARG_ENABLE([png],
-   [AC_HELP_STRING([--disable-png], [disable PNG support @<:@default=enabled@:>@])],
-   [
-    if test "x${enableval}" = "xyes" ; then
-       want_png="yes"
-    else
-       want_png="no"
-    fi
-   ],
-   [want_png="yes"])
-
-AC_MSG_CHECKING([whether to build with PNG support])
-AC_MSG_RESULT([${want_png}])
-
-if test "x${want_png}" = "xyes" ; then
-
-   PKG_CHECK_MODULES([PNG], [libpng15 zlib],
-      [have_libpng="yes"],
-      [
-       PKG_CHECK_MODULES([PNG], [libpng14 zlib],
-          [have_libpng="yes"],
-          [
-           PKG_CHECK_MODULES([PNG], [libpng12 zlib],
-              [have_libpng="yes"],
-              [
-               PKG_CHECK_MODULES([PNG], [libpng zlib],
-                  [have_libpng="yes"],
-                  [have_libpng="no"])
-              ])
-          ])
-      ])
-
-   if ! test "x${have_libpng}" = "xyes" ; then
-
-      OPJ_CHECK_LIB([zlib.h],
-         [z],
-         [zlibVersion],
-         [
-          OPJ_CHECK_LIB([png.h],
-             [png],
-             [png_access_version_number],
-             [
-              have_libpng="yes"
-              PNG_CFLAGS="${PNG_CFLAGS} ${Z_CFLAGS}"
-              PNG_LIBS="${PNG_LIBS} ${Z_LIBS}"
-             ],
-             [have_libpng="no"])
-         ],
-         [have_libpng="no"])
-
-   fi
-
-   if test "x${have_libpng}" = "xno" ; then
-      AC_MSG_WARN([Can not find a usuable PNG library. Make sure that CPPFLAGS and LDFLAGS are correctly set.])
-   fi
-
-fi
-
-AC_MSG_CHECKING([whether PNG is available])
-AC_MSG_RESULT([${have_libpng}])
-
-if test "x${have_libpng}" = "xyes" ; then
-   AC_DEFINE(HAVE_LIBPNG, [1], [define to 1 if you have libpng])
-fi
-
-AM_CONDITIONAL([with_libpng], [test x${have_libpng} = "xyes"])
-
-# libtiff
-
-have_libtiff="no"
-
-AC_ARG_ENABLE([tiff],
-   [AC_HELP_STRING([--disable-tiff], [disable TIFF support @<:@default=enabled@:>@])],
-   [
-    if test "x${enableval}" = "xyes" ; then
-       want_tiff="yes"
-    else
-       want_tiff="no"
-    fi
-   ],
-   [want_tiff="yes"])
-
-AC_MSG_CHECKING([whether to build with TIFF support])
-AC_MSG_RESULT([${want_tiff}])
-
-if test "x${want_tiff}" = "xyes" ; then
-
-   OPJ_CHECK_LIB(
-      [tiff.h],
-      [tiff],
-      [TIFFOpen],
-      [have_libtiff="yes"],
-      [have_libtiff="no"])
-
-   if test "x${have_libtiff}" = "xno" ; then
-      AC_MSG_WARN([Can not find a usuable TIFF library. Make sure that CPPFLAGS and LDFLAGS are correctly set.])
-   fi
-fi
-
-AC_MSG_CHECKING([whether TIFF is available])
-AC_MSG_RESULT([${have_libtiff}])
-
-if test "x${have_libtiff}" = "xyes" ; then
-   AC_DEFINE(HAVE_LIBTIFF, [1], [define to 1 if you have libtiff])
-fi
-
-AM_CONDITIONAL([with_libtiff], [test "x${have_libtiff}" = "xyes"])
-
-# libcms2
-
-lcms_output="no"
-have_lcms2="no"
-
-AC_ARG_ENABLE([lcms2],
-   [AC_HELP_STRING([--disable-lcms2], [disable LCMS-2 support @<:@default=enabled@:>@])],
-   [
-    if test "x${enableval}" = "xyes" ; then
-       want_lcms2="yes"
-    else
-       want_lcms2="no"
-    fi
-   ],
-   [want_lcms2="yes"])
-
-AC_MSG_CHECKING([whether to build with LCMS-2 support])
-AC_MSG_RESULT([${want_lcms2}])
-
-if test "x${want_lcms2}" = "xyes" ; then
-   PKG_CHECK_MODULES([LCMS2], [lcms2],
-      [have_lcms2="yes"],
-      [have_lcms2="no"])
-fi
-
-AC_MSG_CHECKING([whether LCMS-2 is available])
-AC_MSG_RESULT([${have_lcms2}])
-
-if test "x${have_lcms2}" = "xyes" ; then
-   AC_DEFINE(HAVE_LIBLCMS2, [1], [define to 1 if you have lcms version 2.x])
-   lcms_output="lcms version 2.x"
-fi
-
-# libcms1
-
-AC_ARG_ENABLE([lcms1],
-   [AC_HELP_STRING([--disable-lcms1], [disable LCMS-1 support @<:@default=enabled@:>@])],
-   [
-    if test "x${enableval}" = "xyes" ; then
-       want_lcms1="yes"
-    else
-       want_lcms1="no"
-    fi
-   ],
-   [want_lcms1="yes"])
-
-AC_MSG_CHECKING([whether to build with LCMS-1 support])
-AC_MSG_RESULT([${want_lcms1}])
-
-if test "x${have_lcms2}" = "xno" ; then
-
-   if test "x${want_lcms1}" = "xyes" ; then
-      PKG_CHECK_MODULES([LCMS1], [lcms1],
-         [have_lcms1="yes"],
-         [PKG_CHECK_MODULES([LCMS1], [lcms],
-            [have_lcms1="yes"],
-            [have_lcms1="no"])])
-   fi
-
-   AC_MSG_CHECKING([whether LCMS-1 is available])
-   AC_MSG_RESULT([${have_lcms1}])
-
-   if test "x${have_lcms1}" = "xyes" ; then
-      AC_DEFINE(HAVE_LIBLCMS1, [1], [define to 1 if you have lcms version 1.x])
-      lcms_output="lcms version 1.x"
-   fi
-
-fi
-
-# threads
-
-if test "x${want_jpip_server}" = "xyes" ; then
-
-   if test "x${have_win32}" = "xno" ; then
-
-      SAVE_CFLAGS=${CFLAGS}
-      CFLAGS="${CFLAGS} -pthread"
-      SAVE_LIBS=${LIBS}
-      LIBS="${LIBS} -pthread"
-      AC_LINK_IFELSE(
-         [AC_LANG_PROGRAM([[
-#include <pthread.h>
-                          ]],
-                          [[
-pthread_t id;
-id = pthread_self();
-                          ]])],
-         [have_pthread="yes"],
-         [have_pthread="no"])
-      CFLAGS=${SAVE_CFLAGS}
-      LIBS=${SAVE_LIBS}
-
-      AC_MSG_CHECKING([whether Pthread library is available])
-      AC_MSG_RESULT([${have_pthread}])
-
-      if ! test "x${have_pthread}" = "xyes" ; then
-         AC_MSG_WARN([Pthread library not found. OpenJPIP server will not be compiled.])
-         want_jpip_server="no"
-      else
-         THREAD_CFLAGS="-pthread"
-         THREAD_LIBS="-pthread"
-      fi
-
-   else
-      THREAD_LIBS="-lws2_32"
-   fi
-
-fi
-
-AC_ARG_VAR([THREAD_CFLAGS], [compiler flag for the thread library])
-AC_SUBST([THREAD_CFLAGS])
-AC_ARG_VAR([THREAD_LIBS], [linker flags for thread library])
-AC_SUBST([THREAD_LIBS])
-
-# libfcgi
-
-if test "x${want_jpip_server}" = "xyes" ; then
-
-   have_fcgi="no"
-   OPJ_CHECK_LIB(
-      [fcgi_stdio.h],
-      [fcgi],
-      [FCGI_Accept],
-      [have_fcgi="yes"],
-      [have_fcgi="no"])
-
-   if ! test "x${have_fcgi}" = "xyes" ; then
-      AC_MSG_WARN([FastCGI library not found. OpenJPIP server will not be compiled.])
-      want_jpip_server="no"
-   fi
-
-fi
-
-# libcurl
-
-if test "x${want_jpip_server}" = "xyes" ; then
-
-   PKG_CHECK_MODULES([LIBCURL], [libcurl],
-      [have_libcurl="yes"],
-      [have_libcurl="no"])
-
-   if ! test "x${have_libcurl}" = "xyes" ; then
-      AC_MSG_WARN([libcurl library not found. OpenJPIP server will not be compiled.])
-      want_jpip_server="no"
-   fi
-
-fi
-
-if test "x${want_jpip}" = "xyes" ; then
-   AC_DEFINE(USE_JPIP, [1], [define to 1 if you use jpip])
-fi
-
-AM_CONDITIONAL([WANT_JPIP], [test "x${want_jpip}" = "xyes"])
-
-if test "x${want_jpip_server}" = "xyes" ; then
-   AC_DEFINE(USE_JPIP_SERVER, [1], [define to 1 if you use jpip server])
-fi
-
-AM_CONDITIONAL([WANT_JPIP_SERVER], [test "x${want_jpip_server}" = "xyes"])
-
-AM_CONDITIONAL([WANT_JPIP_CODE], [test "x${want_jpip}" = "xyes" || test "x${want_jpip_server}" = "xyes"])
-
-### Checks for header files
-
-## FIXME: declarations must be fixed in source code. See autoconf manual
-AC_HEADER_DIRENT
-
-
-### Checks for types
-
-
-### Checks for structures
-
-
-### Checks for compiler characteristics
-
-AM_PROG_CC_C_O
-AC_C_BIGENDIAN
-
-#OPJ_COMPILER_FLAG([-Wall])
-#OPJ_COMPILER_FLAG([-Wextra])
-#OPJ_COMPILER_FLAG([-Wshadow])
-#OPJ_COMPILER_FLAG([-Wpointer-arith])
-OPJ_COMPILER_FLAG([-Wno-unused-result])
-
-if test "x${want_debug}" = "xyes" ; then
-   OPJ_COMPILER_FLAG([-g])
-   OPJ_COMPILER_FLAG([-O0])
-else
-   OPJ_COMPILER_FLAG([-O3])
-fi
-
-
-### Checks for linker characteristics
-
-
-### Checks for library functions
-
-
-### Post configuration
-
-AM_CONDITIONAL([BUILD_SHARED], [test "x${enable_shared}" = "xyes"])
-AM_CONDITIONAL([BUILD_STATIC], [test "x${enable_static}" = "xyes"])
-
-
-AC_CONFIG_FILES([
-Makefile
-libopenjpeg1.pc
-libopenjpeg-jpwl.pc
-libopenjpeg/Makefile
-libopenjpeg/jpwl/Makefile
-applications/Makefile
-applications/codec/Makefile
-applications/mj2/Makefile
-applications/jpip/Makefile
-applications/jpip/libopenjpip/Makefile
-applications/jpip/util/Makefile
-doc/Makefile
-])
-
-AC_OUTPUT
-
-### Summary
-
-echo
-echo
-echo
-echo "------------------------------------------------------------------------"
-echo "$PACKAGE $VERSION"
-echo "------------------------------------------------------------------------"
-echo
-echo
-echo "Configuration Options Summary:"
-echo
-echo "  Debug...............: ${want_debug}"
-echo
-echo "  Optional support:"
-echo "    libpng............: ${have_libpng}"
-echo "    libtiff...........: ${have_libtiff}"
-echo "    libcms............: ${lcms_output}"
-echo
-echo "  Documentation.......: ${opj_have_doxygen}"
-echo "    Build.............: make doc"
-echo
-echo "  mj2.................: ${want_mj2}"
-echo "  jpwl................: ${want_jpwl}"
-echo "  jpip................: ${want_jpip}"
-echo "  jpip server.........: ${want_jpip_server}"
-echo

doc/CMakeLists.txt

@@ -3,19 +3,50 @@
 # to generate the html documentation in the doc/html repository of the build folder.
 
 # Try to find the doxygen tool
-FIND_PACKAGE(Doxygen)
+find_package(Doxygen)
 
-IF(DOXYGEN_FOUND)
+if(DOXYGEN_FOUND)
   # Configure the doxygen config file with variable from CMake and move it
-  CONFIGURE_FILE(${CMAKE_CURRENT_SOURCE_DIR}/Doxyfile.dox.cmake.in
+  configure_file(${CMAKE_CURRENT_SOURCE_DIR}/Doxyfile.dox.cmake.in
     ${CMAKE_BINARY_DIR}/doc/Doxyfile-html.dox @ONLY)
-  
+
+  # Configure the html mainpage file of the doxygen documentation with variable
+  # from CMake and move it
+  configure_file(${CMAKE_CURRENT_SOURCE_DIR}/mainpage.dox.in
+    ${CMAKE_BINARY_DIR}/doc/mainpage.dox @ONLY)
+  configure_file(${CMAKE_CURRENT_SOURCE_DIR}/openjpip.dox.in
+    ${CMAKE_BINARY_DIR}/doc/openjpip.dox @ONLY)
+  # copy png file to make local (binary tree) documentation valid:
+  configure_file(${CMAKE_CURRENT_SOURCE_DIR}/jpip_architect.png
+    ${CMAKE_BINARY_DIR}/doc/html/jpip_architect.png COPYONLY)
+  configure_file(${CMAKE_CURRENT_SOURCE_DIR}/jpip_protocol.png
+    ${CMAKE_BINARY_DIR}/doc/html/jpip_protocol.png COPYONLY)
+
+  file(GLOB headers
+    ${OPENJPEG_SOURCE_DIR}/src/lib/openjp2/*.h
+    ${OPENJPEG_SOURCE_DIR}/src/lib/openjp2/*.c
+    ${OPENJPEG_SOURCE_DIR}/src/lib/openjpip/*.h
+    ${OPENJPEG_SOURCE_DIR}/src/lib/openjpip/*.c
+  )
   # Generate new target to build the html documentation
-  ADD_CUSTOM_TARGET(doc ALL
-    ${DOXYGEN_EXECUTABLE} ${CMAKE_BINARY_DIR}/doc/Doxyfile-html.dox)
+  add_custom_command(
+    OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/html/index.html
+    COMMAND ${DOXYGEN_EXECUTABLE} ${CMAKE_BINARY_DIR}/doc/Doxyfile-html.dox
+    DEPENDS ${CMAKE_BINARY_DIR}/doc/Doxyfile-html.dox
+            ${CMAKE_BINARY_DIR}/doc/mainpage.dox
+            ${CMAKE_BINARY_DIR}/doc/openjpip.dox
+            ${headers}
+  )
+  add_custom_target(doc ALL
+    DEPENDS ${CMAKE_BINARY_DIR}/doc/html/index.html
+    COMMENT "Building doxygen documentation"
+  )
 
-ELSE(DOXYGEN_FOUND)
-
-  MESSAGE(STATUS "Doxygen not found, we cannot generate the documentation")
-
-ENDIF(DOXYGEN_FOUND)
+  # install HTML documentation (install png files too):
+  install(DIRECTORY ${CMAKE_BINARY_DIR}/doc/html
+    DESTINATION share/doc
+    PATTERN ".svn" EXCLUDE
+  )
+else()
+  message(STATUS "Doxygen not found, we cannot generate the documentation")
+endif()

doc/Doxyfile.dox

@@ -1,290 +0,0 @@
-# Doxyfile 1.7.3
-
-#---------------------------------------------------------------------------
-# Project related configuration options
-#---------------------------------------------------------------------------
-DOXYFILE_ENCODING      = UTF-8
-PROJECT_NAME           = OpenJPEG
-PROJECT_NUMBER         =
-PROJECT_BRIEF          =
-PROJECT_LOGO           =
-OUTPUT_DIRECTORY       = .
-CREATE_SUBDIRS         = NO
-OUTPUT_LANGUAGE        = English
-BRIEF_MEMBER_DESC      = YES
-REPEAT_BRIEF           = YES
-ABBREVIATE_BRIEF       = "The $name class" \
-                         "The $name widget" \
-                         "The $name file" \
-                         is \
-                         provides \
-                         specifies \
-                         contains \
-                         represents \
-                         a \
-                         an \
-                         the
-ALWAYS_DETAILED_SEC    = NO
-INLINE_INHERITED_MEMB  = NO
-FULL_PATH_NAMES        = NO
-STRIP_FROM_PATH        = C://
-STRIP_FROM_INC_PATH    =
-SHORT_NAMES            = NO
-JAVADOC_AUTOBRIEF      = YES
-QT_AUTOBRIEF           = NO
-MULTILINE_CPP_IS_BRIEF = NO
-INHERIT_DOCS           = YES
-SEPARATE_MEMBER_PAGES  = NO
-TAB_SIZE               = 8
-ALIASES                =
-OPTIMIZE_OUTPUT_FOR_C  = YES
-OPTIMIZE_OUTPUT_JAVA   = NO
-OPTIMIZE_FOR_FORTRAN   = NO
-OPTIMIZE_OUTPUT_VHDL   = NO
-EXTENSION_MAPPING      =
-BUILTIN_STL_SUPPORT    = NO
-CPP_CLI_SUPPORT        = NO
-SIP_SUPPORT            = NO
-IDL_PROPERTY_SUPPORT   = YES
-DISTRIBUTE_GROUP_DOC   = NO
-SUBGROUPING            = YES
-TYPEDEF_HIDES_STRUCT   = NO
-SYMBOL_CACHE_SIZE      = 0
-#---------------------------------------------------------------------------
-# Build related configuration options
-#---------------------------------------------------------------------------
-EXTRACT_ALL            = YES
-EXTRACT_PRIVATE        = YES
-EXTRACT_STATIC         = YES
-EXTRACT_LOCAL_CLASSES  = YES
-EXTRACT_LOCAL_METHODS  = NO
-EXTRACT_ANON_NSPACES   = NO
-HIDE_UNDOC_MEMBERS     = NO
-HIDE_UNDOC_CLASSES     = NO
-HIDE_FRIEND_COMPOUNDS  = NO
-HIDE_IN_BODY_DOCS      = NO
-INTERNAL_DOCS          = NO
-CASE_SENSE_NAMES       = NO
-HIDE_SCOPE_NAMES       = NO
-SHOW_INCLUDE_FILES     = YES
-FORCE_LOCAL_INCLUDES   = NO
-INLINE_INFO            = YES
-SORT_MEMBER_DOCS       = YES
-SORT_BRIEF_DOCS        = NO
-SORT_MEMBERS_CTORS_1ST = NO
-SORT_GROUP_NAMES       = NO
-SORT_BY_SCOPE_NAME     = NO
-STRICT_PROTO_MATCHING  = NO
-GENERATE_TODOLIST      = YES
-GENERATE_TESTLIST      = YES
-GENERATE_BUGLIST       = YES
-GENERATE_DEPRECATEDLIST= YES
-ENABLED_SECTIONS       =
-MAX_INITIALIZER_LINES  = 30
-SHOW_USED_FILES        = YES
-SHOW_DIRECTORIES       = NO
-SHOW_FILES             = YES
-SHOW_NAMESPACES        = YES
-FILE_VERSION_FILTER    =
-LAYOUT_FILE            =
-#---------------------------------------------------------------------------
-# configuration options related to warning and progress messages
-#---------------------------------------------------------------------------
-QUIET                  = NO
-WARNINGS               = YES
-WARN_IF_UNDOCUMENTED   = YES
-WARN_IF_DOC_ERROR      = YES
-WARN_NO_PARAMDOC       = NO
-WARN_FORMAT            = "$file:$line: $text"
-WARN_LOGFILE           =
-#---------------------------------------------------------------------------
-# configuration options related to the input files
-#---------------------------------------------------------------------------
-INPUT                  = ../libopenjpeg \
-                         ../libopenjpeg/jpwl
-INPUT_ENCODING         = UTF-8
-FILE_PATTERNS          = *.h \
-                         *.c
-RECURSIVE              = NO
-EXCLUDE                =
-EXCLUDE_SYMLINKS       = NO
-EXCLUDE_PATTERNS       =
-EXCLUDE_SYMBOLS        =
-EXAMPLE_PATH           =
-EXAMPLE_PATTERNS       = *
-EXAMPLE_RECURSIVE      = NO
-IMAGE_PATH             =
-INPUT_FILTER           =
-FILTER_PATTERNS        =
-FILTER_SOURCE_FILES    = NO
-FILTER_SOURCE_PATTERNS =
-#---------------------------------------------------------------------------
-# configuration options related to source browsing
-#---------------------------------------------------------------------------
-SOURCE_BROWSER         = NO
-INLINE_SOURCES         = NO
-STRIP_CODE_COMMENTS    = YES
-REFERENCED_BY_RELATION = YES
-REFERENCES_RELATION    = YES
-REFERENCES_LINK_SOURCE = YES
-USE_HTAGS              = NO
-VERBATIM_HEADERS       = YES
-#---------------------------------------------------------------------------
-# configuration options related to the alphabetical class index
-#---------------------------------------------------------------------------
-ALPHABETICAL_INDEX     = NO
-COLS_IN_ALPHA_INDEX    = 5
-IGNORE_PREFIX          =
-#---------------------------------------------------------------------------
-# configuration options related to the HTML output
-#---------------------------------------------------------------------------
-GENERATE_HTML          = YES
-HTML_OUTPUT            = ./html
-HTML_FILE_EXTENSION    = .html
-HTML_HEADER            =
-HTML_FOOTER            =
-HTML_STYLESHEET        =
-HTML_COLORSTYLE_HUE    = 220
-HTML_COLORSTYLE_SAT    = 100
-HTML_COLORSTYLE_GAMMA  = 80
-HTML_TIMESTAMP         = YES
-HTML_ALIGN_MEMBERS     = YES
-HTML_DYNAMIC_SECTIONS  = NO
-GENERATE_DOCSET        = NO
-DOCSET_FEEDNAME        = "Doxygen generated docs"
-DOCSET_BUNDLE_ID       = org.doxygen.Project
-DOCSET_PUBLISHER_ID    = org.doxygen.Publisher
-DOCSET_PUBLISHER_NAME  = Publisher
-GENERATE_HTMLHELP      = NO
-CHM_FILE               =
-HHC_LOCATION           =
-GENERATE_CHI           = NO
-CHM_INDEX_ENCODING     =
-BINARY_TOC             = NO
-TOC_EXPAND             = NO
-GENERATE_QHP           = NO
-QCH_FILE               =
-QHP_NAMESPACE          = org.doxygen.Project
-QHP_VIRTUAL_FOLDER     = doc
-QHP_CUST_FILTER_NAME   =
-QHP_CUST_FILTER_ATTRS  =
-QHP_SECT_FILTER_ATTRS  =
-QHG_LOCATION           =
-GENERATE_ECLIPSEHELP   = NO
-ECLIPSE_DOC_ID         = org.doxygen.Project
-DISABLE_INDEX          = NO
-ENUM_VALUES_PER_LINE   = 4
-GENERATE_TREEVIEW      = NO
-USE_INLINE_TREES       = NO
-TREEVIEW_WIDTH         = 250
-EXT_LINKS_IN_WINDOW    = NO
-FORMULA_FONTSIZE       = 10
-FORMULA_TRANSPARENT    = YES
-USE_MATHJAX            = NO
-MATHJAX_RELPATH        = http://www.mathjax.org/mathjax
-SEARCHENGINE           = NO
-SERVER_BASED_SEARCH    = NO
-#---------------------------------------------------------------------------
-# configuration options related to the LaTeX output
-#---------------------------------------------------------------------------
-GENERATE_LATEX         = NO
-LATEX_OUTPUT           = latex
-LATEX_CMD_NAME         = latex
-MAKEINDEX_CMD_NAME     = makeindex
-COMPACT_LATEX          = NO
-PAPER_TYPE             = a4wide
-EXTRA_PACKAGES         =
-LATEX_HEADER           =
-PDF_HYPERLINKS         = NO
-USE_PDFLATEX           = NO
-LATEX_BATCHMODE        = NO
-LATEX_HIDE_INDICES     = NO
-LATEX_SOURCE_CODE      = NO
-#---------------------------------------------------------------------------
-# configuration options related to the RTF output
-#---------------------------------------------------------------------------
-GENERATE_RTF           = NO
-RTF_OUTPUT             = rtf
-COMPACT_RTF            = NO
-RTF_HYPERLINKS         = NO
-RTF_STYLESHEET_FILE    =
-RTF_EXTENSIONS_FILE    =
-#---------------------------------------------------------------------------
-# configuration options related to the man page output
-#---------------------------------------------------------------------------
-GENERATE_MAN           = NO
-MAN_OUTPUT             = man
-MAN_EXTENSION          = .3
-MAN_LINKS              = NO
-#---------------------------------------------------------------------------
-# configuration options related to the XML output
-#---------------------------------------------------------------------------
-GENERATE_XML           = NO
-XML_OUTPUT             = xml
-XML_SCHEMA             =
-XML_DTD                =
-XML_PROGRAMLISTING     = YES
-#---------------------------------------------------------------------------
-# configuration options for the AutoGen Definitions output
-#---------------------------------------------------------------------------
-GENERATE_AUTOGEN_DEF   = NO
-#---------------------------------------------------------------------------
-# configuration options related to the Perl module output
-#---------------------------------------------------------------------------
-GENERATE_PERLMOD       = NO
-PERLMOD_LATEX          = NO
-PERLMOD_PRETTY         = YES
-PERLMOD_MAKEVAR_PREFIX =
-#---------------------------------------------------------------------------
-# Configuration options related to the preprocessor
-#---------------------------------------------------------------------------
-ENABLE_PREPROCESSING   = YES
-MACRO_EXPANSION        = NO
-EXPAND_ONLY_PREDEF     = NO
-SEARCH_INCLUDES        = YES
-INCLUDE_PATH           =
-INCLUDE_FILE_PATTERNS  =
-PREDEFINED             = USE_JPWL \
-                         USE_JPSEC
-EXPAND_AS_DEFINED      =
-SKIP_FUNCTION_MACROS   = YES
-#---------------------------------------------------------------------------
-# Configuration::additions related to external references
-#---------------------------------------------------------------------------
-TAGFILES               =
-GENERATE_TAGFILE       =
-ALLEXTERNALS           = NO
-EXTERNAL_GROUPS        = YES
-PERL_PATH              = /usr/bin/perl
-#---------------------------------------------------------------------------
-# Configuration options related to the dot tool
-#---------------------------------------------------------------------------
-CLASS_DIAGRAMS         = YES
-MSCGEN_PATH            =
-HIDE_UNDOC_RELATIONS   = YES
-HAVE_DOT               = NO
-DOT_NUM_THREADS        = 0
-DOT_FONTNAME           = Helvetica
-DOT_FONTSIZE           = 10
-DOT_FONTPATH           =
-CLASS_GRAPH            = YES
-COLLABORATION_GRAPH    = YES
-GROUP_GRAPHS           = YES
-UML_LOOK               = NO
-TEMPLATE_RELATIONS     = NO
-INCLUDE_GRAPH          = YES
-INCLUDED_BY_GRAPH      = YES
-CALL_GRAPH             = NO
-CALLER_GRAPH           = NO
-GRAPHICAL_HIERARCHY    = YES
-DIRECTORY_GRAPH        = YES
-DOT_IMAGE_FORMAT       = png
-DOT_PATH               =
-DOTFILE_DIRS           =
-MSCFILE_DIRS           =
-DOT_GRAPH_MAX_NODES    = 50
-MAX_DOT_GRAPH_DEPTH    = 1000
-DOT_TRANSPARENT        = NO
-DOT_MULTI_TARGETS      = NO
-GENERATE_LEGEND        = YES
-DOT_CLEANUP            = YES

doc/Doxyfile.dox.cmake.in

@@ -1,4 +1,4 @@
-# Doxyfile 1.7.3
+# Doxyfile 1.7.1
 
 #---------------------------------------------------------------------------
 # Project related configuration options
@@ -6,8 +6,6 @@
 DOXYFILE_ENCODING      = UTF-8
 PROJECT_NAME           = OpenJPEG
 PROJECT_NUMBER         = @OPENJPEG_VERSION@
-PROJECT_BRIEF          =
-PROJECT_LOGO           =
 OUTPUT_DIRECTORY       = @OPENJPEG_BINARY_DIR@/doc
 CREATE_SUBDIRS         = NO
 OUTPUT_LANGUAGE        = English
@@ -74,7 +72,6 @@ SORT_BRIEF_DOCS        = NO
 SORT_MEMBERS_CTORS_1ST = NO
 SORT_GROUP_NAMES       = NO
 SORT_BY_SCOPE_NAME     = NO
-STRICT_PROTO_MATCHING  = NO
 GENERATE_TODOLIST      = YES
 GENERATE_TESTLIST      = YES
 GENERATE_BUGLIST       = YES
@@ -100,24 +97,25 @@ WARN_LOGFILE           =
 #---------------------------------------------------------------------------
 # configuration options related to the input files
 #---------------------------------------------------------------------------
-INPUT                  = @OPENJPEG_SOURCE_DIR@/libopenjpeg \
-                         @OPENJPEG_SOURCE_DIR@/libopenjpeg/jpwl
+INPUT                  = @OPENJPEG_SOURCE_DIR@/src/lib/openjp2 \
+                         @OPENJPEG_SOURCE_DIR@/src/lib/openjpip \
+                         @OPENJPEG_BINARY_DIR@/doc
 INPUT_ENCODING         = UTF-8
 FILE_PATTERNS          = *.h \
-                         *.c
-RECURSIVE              = NO
+                         *.c \
+                         *.dox
+RECURSIVE              = YES
 EXCLUDE                =
 EXCLUDE_SYMLINKS       = NO
-EXCLUDE_PATTERNS       =
+EXCLUDE_PATTERNS       = */.svn/*
 EXCLUDE_SYMBOLS        =
 EXAMPLE_PATH           =
 EXAMPLE_PATTERNS       = *
 EXAMPLE_RECURSIVE      = NO
-IMAGE_PATH             =
+IMAGE_PATH             = @OPENJPEG_SOURCE_DIR@/doc
 INPUT_FILTER           =
 FILTER_PATTERNS        =
 FILTER_SOURCE_FILES    = NO
-FILTER_SOURCE_PATTERNS =
 #---------------------------------------------------------------------------
 # configuration options related to source browsing
 #---------------------------------------------------------------------------
@@ -147,7 +145,7 @@ HTML_STYLESHEET        =
 HTML_COLORSTYLE_HUE    = 220
 HTML_COLORSTYLE_SAT    = 100
 HTML_COLORSTYLE_GAMMA  = 80
-HTML_TIMESTAMP         = YES
+HTML_TIMESTAMP         = NO 
 HTML_ALIGN_MEMBERS     = YES
 HTML_DYNAMIC_SECTIONS  = NO
 GENERATE_DOCSET        = NO
@@ -180,8 +178,6 @@ TREEVIEW_WIDTH         = 250
 EXT_LINKS_IN_WINDOW    = NO
 FORMULA_FONTSIZE       = 10
 FORMULA_TRANSPARENT    = YES
-USE_MATHJAX            = NO
-MATHJAX_RELPATH        = http://www.mathjax.org/mathjax
 SEARCHENGINE           = NO
 SERVER_BASED_SEARCH    = NO
 #---------------------------------------------------------------------------
@@ -281,7 +277,6 @@ DIRECTORY_GRAPH        = YES
 DOT_IMAGE_FORMAT       = png
 DOT_PATH               =
 DOTFILE_DIRS           =
-MSCFILE_DIRS           =
 DOT_GRAPH_MAX_NODES    = 50
 MAX_DOT_GRAPH_DEPTH    = 1000
 DOT_TRANSPARENT        = NO

doc/Makefile.am

@@ -1,72 +0,0 @@
-
-MAINTAINERCLEANFILES = Makefile.in
-
-.PHONY: doc
-
-PACKAGE_DOCNAME = $(PACKAGE_TARNAME)-$(PACKAGE_VERSION)-doc
-
-if OPJ_BUILD_DOC
-
-doc-clean:
-	rm -rf $(top_srcdir)/doc/html/ $(top_srcdir)/doc/$(PACKAGE_DOCNAME).tar*
-
-doc: all
-	cd $(top_srcdir)/doc && \
-	$(opj_doxygen) Doxyfile.dox
-	rm -rf $(PACKAGE_DOCNAME).tar*
-	rm -rf $(top_srcdir)/doc/$(PACKAGE_DOCNAME).tar*
-	mkdir -p $(PACKAGE_DOCNAME)/doc
-	cp -R $(top_srcdir)/doc/html/ $(PACKAGE_DOCNAME)/doc
-	tar cf $(PACKAGE_DOCNAME).tar $(PACKAGE_DOCNAME)/
-	bzip2 -9 $(PACKAGE_DOCNAME).tar
-	rm -rf $(PACKAGE_DOCNAME)/
-	if ! test -f $(top_srcdir)/doc/$(PACKAGE_DOCNAME).tar.bz2 ; then \
-	   mv $(PACKAGE_DOCNAME).tar.bz2 $(top_srcdir)/doc; \
-	fi
-
-clean-local: doc-clean
-
-else
-
-doc:
-	@echo "Documentation not built. Run ./configure --help"
-
-endif
-
-docsdir = $(docdir)-$(MAJOR_NR).$(MINOR_NR)
-docs_DATA = $(top_builddir)/LICENSE $(top_builddir)/CHANGES
-
-dist_man1_MANS = \
-man/man1/image_to_j2k.1 \
-man/man1/j2k_dump.1 \
-man/man1/j2k_to_image.1
-
-dist_man3_MANS = \
-man/man3/libopenjpeg.3
-
-install-data-hook:
-	cd $(DESTDIR)$(man1dir) && \
-	  rm -f jpwl_image_to_j2k.1 && \
-	  $(LN_S) image_to_j2k.1 jpwl_image_to_j2k.1
-	cd $(DESTDIR)$(man1dir) && \
-	  rm -f jpwl_j2k_to_image.1 && \
-	  $(LN_S) j2k_to_image.1 jpwl_j2k_to_image.1
-	cd $(DESTDIR)$(man3dir) && \
-	  rm -f jpwl_libopenjpeg.3 && \
-	  $(LN_S) libopenjpeg.3 jpwl_libopenjpeg.3
-	@echo -e " (MAN)\t$(man1dir)/image_to_j2k.1" >> $(top_builddir)/report.txt
-	@echo -e " (LN)\t$(man1dir)/jpwl_image_to_j2k.1" >> $(top_builddir)/report.txt
-	@echo -e " (MAN)\t$(man1dir)/j2k_dump.1" >> $(top_builddir)/report.txt
-	@echo -e " (MAN)\t$(man1dir)/j2k_to_image.1" >> $(top_builddir)/report.txt
-	@echo -e " (LN)\t$(man1dir)//jpwl_j2k_to_image.1" >> $(top_builddir)/report.txt
-	@echo -e " (MAN)\t$(man3dir)/libopenjpeg.3" >> $(top_builddir)/report.txt
-	@echo -e " (LN)\t$(man3dir)/jpwl_libopenjpeg.3" >> $(top_builddir)/report.txt
-
-uninstall-hook:
-	rm -f $(DESTDIR)$(man1dir)/jpwl_image_to_j2k.1
-	rm -f $(DESTDIR)$(man1dir)/jpwl_j2k_to_image.1
-	rm -f $(DESTDIR)$(man3dir)/jpwl_libopenjpeg.3
-
-EXTRA_DIST = \
-CMakeLists.txt \
-Doxyfile.dox

doc/mainpage.dox.in

@@ -0,0 +1,62 @@
+/*
+ * $Id$
+ *
+ * Copyright (c) 2002-2014, Universite catholique de Louvain (UCL), Belgium
+ * Copyright (c) 2011, Mickael Savinaud, Communications & Systemes <mickael.savinaud@c-s.fr>
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions
+ * are met:
+ * 1. Redistributions of source code must retain the above copyright
+ *    notice, this list of conditions and the following disclaimer.
+ * 2. Redistributions in binary form must reproduce the above copyright
+ *    notice, this list of conditions and the following disclaimer in the
+ *    documentation and/or other materials provided with the distribution.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS `AS IS'
+ * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED.  IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
+ * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+ * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+ * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+ * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+ * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+ * POSSIBILITY OF SUCH DAMAGE.
+ */
+
+/*! \mainpage OpenJPEG v@OPENJPEG_VERSION@ Documentation
+*
+* \section intro Introduction
+* This manual documents the low-level OpenJPEG C API.\n
+* The OpenJPEG library is an open-source JPEG 2000 library developed in order to promote the use of JPEG 2000.\n
+* This documents is focused on the main part of the library which try to implement Part 1 and Part 2 of the JPEG2000 norm.\n
+*
+* \section home Home page
+*
+* The Home Page of the OpenJPEG library can be found at:
+*
+* http://code.google.com/p/openjpeg/
+*
+* More information about the OpenJPEG library is available here:
+*
+* http://www.openjpeg.org/
+*
+* The OpenJPEG mailing list is located here:
+*
+* http://groups.google.com/group/openjpeg
+*
+* All the source code is online and can be retrieved using svn from here:
+*
+* http://openjpeg.googlecode.com/svn/
+*
+* \section license License
+* This software is released under the BSD license, anybody can use or modify the library, even for commercial applications.\n
+* The only restriction is to retain the copyright in the sources or the binaries documentation.\n
+* Neither the author, nor the university accept any responsibility for any kind of error or data loss which may occur during usage.
+*
+* \author OpenJPEG Team
+*
+*/

doc/man/man1/opj_compress.1

@@ -29,10 +29,10 @@
 .SP
 .fi
 ..
-.TH image_to_j2k 1 "Version 1.4.0" "image_to_j2k" "converts to jpeg2000 files"
+.TH opj_compress 1 "Version 1.4.0" "opj_compress" "converts to jpeg2000 files"
 .P
 .SH NAME
-image_to_j2k - 
+opj_compress - 
 This program reads in an image of a certain type and converts it to a
 jpeg2000 file. It is part of the OpenJPEG library.
 .SP
@@ -43,11 +43,11 @@ Valid output image extensions are
 .B .j2k, .jp2
 .SH SYNOPSIS
 .P
-.B image_to_j2k -i \fRinfile.bmp \fB-o \fRoutfile.j2k
+.B opj_compress -i \fRinfile.bmp \fB-o \fRoutfile.j2k
 .P
-.B image_to_j2k -ImgDir \fRdirectory_name \fB-OutFor \fRjp2
+.B opj_compress -ImgDir \fRdirectory_name \fB-OutFor \fRjp2
 .P
-.B image_to_j2k -h \fRPrint a help message and exit.
+.B opj_compress -h \fRPrint a help message and exit.
 .P
 .R See JPWL OPTIONS for special options
 .SH OPTIONS
@@ -194,18 +194,18 @@ Options usable only if the library has been compiled with \fB-DUSE_JPWL\fR
 .P
 .SH EXAMPLES
 .P
-.B image_to_j2k -i \fRfile.bmp \fB-o \fRfile.j2k \fB-r \fR20,10,1 (compress 20x, then 10x, then lossless).
+.B opj_compress -i \fRfile.bmp \fB-o \fRfile.j2k \fB-r \fR20,10,1 (compress 20x, then 10x, then lossless).
 .P
-.B image_to_j2k -i \fRfile.ppm \fB-o \fRfile.j2k \fB-q \fR30,40,50
+.B opj_compress -i \fRfile.ppm \fB-o \fRfile.j2k \fB-q \fR30,40,50
 .P
-.B image_to_j2k -i \fRfile.pgx \fB-o \fRfile.j2k \fB-POC \fRT1=0,0,1,5,3,CPRL
+.B opj_compress -i \fRfile.pgx \fB-o \fRfile.j2k \fB-POC \fRT1=0,0,1,5,3,CPRL
 .P
-.B image_to_j2k -i \fRlena.raw \fB-o \fRlena.j2k \fB-F \fR512,512,3,8,u
+.B opj_compress -i \fRlena.raw \fB-o \fRlena.j2k \fB-F \fR512,512,3,8,u
 .P
 .SH AUTHORS
-Copyright (c) 2002-2007, Communications and Remote Sensing Laboratory, Universite catholique de Louvain (UCL), Belgium
+Copyright (c) 2002-2014, Universite catholique de Louvain (UCL), Belgium
 .br
-Copyright (c) 2002-2007, Professor Benoit Macq
+Copyright (c) 2002-2014, Professor Benoit Macq
 .br
 Copyright (c) 2001-2003, David Janssens
 .br
@@ -218,5 +218,5 @@ Copyright (c) 2005, Herve Drolon, FreeImage Team
 Copyright (c) 2006-2007, Parvatha Elangovan
 .P
 .SH "SEE ALSO"
-j2k_to_image(1) j2k_dump(1)
+opj_decompress(1) opj_dump(1)
 

doc/man/man1/opj_decompress.1

@@ -29,10 +29,10 @@
 .SP
 .fi
 ..
-.TH j2k_to_image 1 "Version 1.4.0" "j2k_to_image" "converts jpeg2000 files"
+.TH opj_decompress 1 "Version 1.4.0" "opj_decompress" "converts jpeg2000 files"
 .P
 .SH NAME
-j2k_to_image - 
+opj_decompress - 
 This program reads in a jpeg2000 image and converts it to another 
 image type. It is part of the OpenJPEG library.
 .SP
@@ -43,11 +43,11 @@ Valid output image extensions are
 .B .bmp, .pgm, .pgx, .png, .pnm, .ppm, .raw, .tga, .tif \fR. For PNG resp. TIF it needs libpng resp. libtiff .
 .SH SYNOPSIS
 .P
-.B j2k_to_image -i \fRinfile.j2k \fB-o \fRoutfile.png
+.B opj_decompress -i \fRinfile.j2k \fB-o \fRoutfile.png
 .P
-.B j2k_to_image -ImgDir \fRimages/ \fB-OutFor \fRbmp
+.B opj_decompress -ImgDir \fRimages/ \fB-OutFor \fRbmp
 .P
-.B j2k_to_image -h  \fRPrint help message and exit
+.B opj_decompress -h  \fRPrint help message and exit
 .P
 .R See JPWL OPTIONS for special options
 .SH OPTIONS
@@ -91,9 +91,9 @@ Set the maximum number of quality layers to decode. If there are less quality la
 .P
 '\".SH BUGS
 .SH AUTHORS
-Copyright (c) 2002-2007, Communications and Remote Sensing Laboratory, Universite catholique de Louvain (UCL), Belgium
+Copyright (c) 2002-2014, Universite catholique de Louvain (UCL), Belgium
 .br
-Copyright (c) 2002-2007, Professor Benoit Macq
+Copyright (c) 2002-2014, Professor Benoit Macq
 .br
 Copyright (c) 2001-2003, David Janssens
 .br
@@ -106,4 +106,4 @@ Copyright (c) 2005, Herve Drolon, FreeImage Team
 Copyright (c) 2006-2007, Parvatha Elangovan
 .P
 .SH "SEE ALSO"
-image_to_j2k(1) j2k_dump(1)
+opj_compress(1) opj_dump(1)

doc/man/man1/opj_dump.1

@@ -29,10 +29,10 @@
 .SP
 .fi
 ..
-.TH j2k_dump 1 "Version 1.4.0" "j2k_dump" "dumps jpeg2000 files"
+.TH opj_dump 1 "Version 1.4.0" "opj_dump" "dumps jpeg2000 files"
 .P
 .SH NAME
-j2k_dump - 
+opj_dump - 
 This program reads in a jpeg2000 image and dumps the contents to stdout. It is part of the OpenJPEG library.
 .SP
 Valid input image extensions are
@@ -40,11 +40,11 @@ Valid input image extensions are
 .SP
 .SH SYNOPSIS
 .P
-.B j2k_dump -i \fRinfile.j2k 
+.B opj_dump -i \fRinfile.j2k 
 .P
-.B j2k_dump -ImgDir \fRimages/ \fRDump all files in images/
+.B opj_dump -ImgDir \fRimages/ \fRDump all files in images/
 .P
-.B j2k_dump -h  \fRPrint help message and exit
+.B opj_dump -h  \fRPrint help message and exit
 .P
 .SH OPTIONS
 .TP
@@ -56,7 +56,7 @@ Valid input image extensions are
 .P
 '\".SH BUGS
 .SH AUTHORS
-Copyright (c) 20010, Mathieu Malaterre
+Copyright (c) 2010, Mathieu Malaterre
 .P
 .SH "SEE ALSO"
-image_to_j2k(1) j2k_to_image(1)
+opj_compress(1) opj_decompress(1)

doc/man/man3/libopenjp2.3

@@ -29,10 +29,10 @@
 .SP
 .fi
 ..
-.TH libopenjpeg 3 "Oct 2010" "Version 1.4.0" "Oct 2010"
+.TH libopenjp2 3 "Oct 2010" "Version 1.4.0" "Oct 2010"
 .P
 .SH NAME
-libopenjpeg - 
+libopenjp2 -
 a library for reading and writing JPEG2000 image files.
 .SP
 .SH SYNOPSIS
@@ -313,9 +313,9 @@ typedef struct opj_cparameters
 '\".SH OPTIONS
 '\".SH BUGS
 .SH AUTHORS
-Copyright (c) 2002-2007, Communications and Remote Sensing Laboratory, Universite catholique de Louvain (UCL), Belgium
+Copyright (c) 2002-2014, Universite catholique de Louvain (UCL), Belgium
 
-Copyright (c) 2002-2007, Professor Benoit Macq
+Copyright (c) 2002-2014, Professor Benoit Macq
 
 Copyright (c) 2001-2003, David Janssens
 

doc/openjpip.dox.in

@@ -1,8 +1,8 @@
 /*
- * $Id: mainpage.h 47 2011-02-17 16:57:49Z kaori $
+ * $Id$
  *
- * Copyright (c) 2002-2011, Communications and Remote Sensing Laboratory, Universite catholique de Louvain (UCL), Belgium
- * Copyright (c) 2002-2011, Professor Benoit Macq
+ * Copyright (c) 2002-2014, Universite catholique de Louvain (UCL), Belgium
+ * Copyright (c) 2002-2014, Professor Benoit Macq
  * Copyright (c) 2010-2011, Kaori Hagihara
  * All rights reserved.
  *
@@ -28,7 +28,7 @@
  * POSSIBILITY OF SUCH DAMAGE.
  */
 
-/*! \mainpage OpenJPIP v2.1 Documentation
+/*! \page openjpippage OpenJPIP v@OPENJPEG_VERSION@ Documentation
  *
  * \section intro Introduction
  * This manual documents the low-level OpenJPIP C API.\n
@@ -36,12 +36,11 @@
  * ( For more info about JPIP, check the website: http://www.jpeg.org/jpeg2000/j2kpart9.html)\n
  *
  * This whole documents covers the following six programs.\n
- * - opj_server.c     JPIP server supporting HTTP connection and JPT/JPP-stream
- * - opj_dec_server.c Server to decode JPT/JPP-stream and communicate locally with JPIP client, which is coded in java
- * - addXMLinJP2.c    To Embed metadata into JP2 file
- * - jpip_to_jp2.c    To Convert JPT/JPP-stream to JP2
- * - jpip_to_j2k.c    To Convert JPT/JPP-stream to J2K
- * - test_index.c     To test index code format of a JP2 file
+ * - opj_server.c          JPIP server supporting HTTP connection and JPT/JPP-stream
+ * - opj_dec_server.c      Server to decode JPT/JPP-stream and communicate locally with JPIP client, which is coded in java
+ * - opj_jpip_addxml.c     To Embed metadata into JP2 file
+ * - opj_jpip_transcode.c  To Convert JPT/JPP-stream to JP2 or J2K
+ * - opj_jpip_test.c       To test index code format of a JP2 file
  *
  * \section license License
  * This software is released under the BSD license, anybody can use or modify the library, even for commercial applications.\n

libopenjpeg-jpwl.pc.in

@@ -1,13 +0,0 @@
-prefix=@prefix@
-exec_prefix=@exec_prefix@
-libdir=@libdir@
-includedir=@includedir@
-
-Name: openjpeg
-Description: JPEG2000 Wireless (Part 11 - JPWL) library
-URL: http://www.openjpeg.org/
-Version: @VERSION@
-@pkgconfig_requires_private@: @requirements@
-Libs: -L${libdir} -lopenjpeg_JPWL
-Libs.private: -lm
-Cflags: -I${includedir}

libopenjpeg/CMakeLists.txt

@@ -1,64 +0,0 @@
-INCLUDE_REGULAR_EXPRESSION("^.*$")
-# Defines the source code for the library
-SET(OPENJPEG_SRCS
-  ${CMAKE_CURRENT_SOURCE_DIR}/bio.c
-  ${CMAKE_CURRENT_SOURCE_DIR}/cio.c
-  ${CMAKE_CURRENT_SOURCE_DIR}/dwt.c
-  ${CMAKE_CURRENT_SOURCE_DIR}/event.c
-  ${CMAKE_CURRENT_SOURCE_DIR}/image.c
-  ${CMAKE_CURRENT_SOURCE_DIR}/j2k.c
-  ${CMAKE_CURRENT_SOURCE_DIR}/j2k_lib.c
-  ${CMAKE_CURRENT_SOURCE_DIR}/jp2.c
-  ${CMAKE_CURRENT_SOURCE_DIR}/jpt.c
-  ${CMAKE_CURRENT_SOURCE_DIR}/mct.c
-  ${CMAKE_CURRENT_SOURCE_DIR}/mqc.c
-  ${CMAKE_CURRENT_SOURCE_DIR}/openjpeg.c
-  ${CMAKE_CURRENT_SOURCE_DIR}/pi.c
-  ${CMAKE_CURRENT_SOURCE_DIR}/raw.c
-  ${CMAKE_CURRENT_SOURCE_DIR}/t1.c
-  ${CMAKE_CURRENT_SOURCE_DIR}/t2.c
-  ${CMAKE_CURRENT_SOURCE_DIR}/tcd.c
-  ${CMAKE_CURRENT_SOURCE_DIR}/tgt.c
-  ${CMAKE_CURRENT_SOURCE_DIR}/cidx_manager.c
-  ${CMAKE_CURRENT_SOURCE_DIR}/phix_manager.c
-  ${CMAKE_CURRENT_SOURCE_DIR}/ppix_manager.c
-  ${CMAKE_CURRENT_SOURCE_DIR}/thix_manager.c
-  ${CMAKE_CURRENT_SOURCE_DIR}/tpix_manager.c
-)
-
-# Build the library
-IF(WIN32)
-  IF(BUILD_SHARED_LIBS)
-    ADD_DEFINITIONS(-DOPJ_EXPORTS)
-  ELSE(BUILD_SHARED_LIBS)
-    ADD_DEFINITIONS(-DOPJ_STATIC)
-  ENDIF(BUILD_SHARED_LIBS)
-ENDIF(WIN32)
-ADD_LIBRARY(${OPENJPEG_LIBRARY_NAME} ${OPENJPEG_SRCS})
-IF(UNIX)
-  TARGET_LINK_LIBRARIES(${OPENJPEG_LIBRARY_NAME} m)
-ENDIF(UNIX)
-SET_TARGET_PROPERTIES(${OPENJPEG_LIBRARY_NAME} PROPERTIES ${OPENJPEG_LIBRARY_PROPERTIES})
-
-# Build the JPWL library ?
-IF(BUILD_JPWL)
- ADD_SUBDIRECTORY(jpwl)
-ENDIF(BUILD_JPWL)
-
-# Install library
-INSTALL(TARGETS ${OPENJPEG_LIBRARY_NAME}
-  EXPORT OpenJPEGTargets
-  RUNTIME DESTINATION ${OPENJPEG_INSTALL_BIN_DIR} COMPONENT Applications
-  LIBRARY DESTINATION ${OPENJPEG_INSTALL_LIB_DIR} COMPONENT Libraries
-  ARCHIVE DESTINATION ${OPENJPEG_INSTALL_LIB_DIR} COMPONENT Libraries
-)
-
-# Install includes files
-INSTALL(FILES openjpeg.h
-  DESTINATION ${OPENJPEG_INSTALL_INCLUDE_DIR}/${OPENJPEG_INSTALL_SUBDIR} COMPONENT Headers
-)
-
-# install man page of the library
-INSTALL(
-  FILES       ${OPENJPEG_SOURCE_DIR}/doc/man/man3/libopenjpeg.3
-  DESTINATION ${OPENJPEG_INSTALL_MAN_DIR}/man3)

libopenjpeg/Makefile.am

@@ -1,111 +0,0 @@
-MAINTAINERCLEANFILES = Makefile.in
-
-SUBDIRS = .
-
-if WANT_JPWL
-SUBDIRS += jpwl
-endif
-
-includesdir = $(includedir)/openjpeg-$(MAJOR_NR).$(MINOR_NR)
-includes_HEADERS = openjpeg.h
-
-lib_LTLIBRARIES = libopenjpeg.la
-
-libopenjpeg_la_CPPFLAGS = \
--I. \
--I$(top_srcdir)/libopenjpeg \
--I$(top_builddir)/libopenjpeg
-libopenjpeg_la_CFLAGS =
-libopenjpeg_la_LIBADD = -lm
-libopenjpeg_la_LDFLAGS = -no-undefined -version-info @lt_version@
-
-libopenjpeg_la_SOURCES = \
-bio.c \
-cio.c \
-dwt.c \
-event.c \
-image.c \
-j2k.c \
-j2k_lib.c \
-jp2.c \
-jpt.c \
-mct.c \
-mqc.c \
-openjpeg.c \
-pi.c \
-raw.c \
-t1.c \
-t1_generate_luts.c \
-t2.c \
-tcd.c \
-tgt.c \
-cidx_manager.c \
-phix_manager.c \
-ppix_manager.c \
-thix_manager.c \
-tpix_manager.c \
-bio.h \
-cio.h \
-dwt.h \
-event.h \
-fix.h \
-image.h \
-indexbox_manager.h \
-int.h \
-j2k.h \
-j2k_lib.h \
-jp2.h \
-jpt.h \
-mct.h \
-mqc.h \
-opj_includes.h \
-opj_malloc.h \
-pi.h \
-raw.h \
-t1.h \
-t1_luts.h \
-t2.h \
-tcd.h \
-tgt.h \
-cidx_manager.h
-
-EXTRA_DIST = \
-CMakeLists.txt
-
-install-data-hook:
-	cd $(DESTDIR)$(includedir) && \
-	  rm -f openjpeg.h && \
-	  $(LN_S) openjpeg-$(MAJOR_NR).$(MINOR_NR)/openjpeg.h \
-	          openjpeg.h
-	@rm -rf $(top_builddir)/report.txt
-	@echo -e " (LA)\t$(libdir)/libopenjpeg.la" >> $(top_builddir)/report.txt
-if BUILD_SHARED
-	@( $(call solist) ) >> $(top_builddir)/report.txt
-endif
-if BUILD_STATIC
-	@echo -e " (A)\t$(base)/$(a)" >> $(top_builddir)/report.txt
-endif
-	@echo -e " (H)\t$(includedir)/openjpeg-$(MAJOR_NR).$(MINOR_NR)/openjpeg.h" >> $(top_builddir)/report.txt
-	@echo -e " (LN)\t$(includedir)/openjpeg.h" >> $(top_builddir)/report.txt
-
-uninstall-hook:
-	rm -f $(DESTDIR)$(includedir)/openjpeg.h
-
-solist    = $(foreach f, $(dll) $(so), echo -e ' $(SO_PREFIX)\t$(base)/$(f)' ;)
-get_tok   = $(shell grep -E "^$(1)=" $(lib_LTLIBRARIES) | cut -d "'" -f 2)
-base      = $(call get_tok,libdir)
-so        = $(call get_tok,library_names)
-a         = $(call get_tok,old_library)
-
-if HAVE_WIN32
-SO_PREFIX = (DLL)
-dll       = $(call get_tok,dlname)
-else
-if HAVE_DARWIN
-SO_PREFIX = (DY)
-dll       =
-else
-SO_PREFIX = (SO)
-dll       =
-endif
-endif

libopenjpeg/cidx_manager.c

@@ -1,213 +0,0 @@
-/*
- * $Id: cidx_manager.c 897 2011-08-28 21:43:57Z Kaori.Hagihara@gmail.com $
- *
- * Copyright (c) 2002-2011, Communications and Remote Sensing Laboratory, Universite catholique de Louvain (UCL), Belgium
- * Copyright (c) 2002-2011, Professor Benoit Macq
- * Copyright (c) 2003-2004, Yannick Verschueren
- * Copyright (c) 2010-2011, Kaori Hagihara
- * All rights reserved.
- *
- * Redistribution and use in source and binary forms, with or without
- * modification, are permitted provided that the following conditions
- * are met:
- * 1. Redistributions of source code must retain the above copyright
- *    notice, this list of conditions and the following disclaimer.
- * 2. Redistributions in binary form must reproduce the above copyright
- *    notice, this list of conditions and the following disclaimer in the
- *    documentation and/or other materials provided with the distribution.
- *
- * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS `AS IS'
- * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
- * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
- * ARE DISCLAIMED.  IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
- * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
- * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
- * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
- * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
- * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
- * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
- * POSSIBILITY OF SUCH DAMAGE.
- */
-
-#include <stdio.h>
-#include <stdlib.h>
-#include "opj_includes.h"
-
-
-/* 
- * Write CPTR Codestream finder box
- *
- * @param[in] coff offset of j2k codestream
- * @param[in] clen length of j2k codestream
- * @param[in] cio  file output handle
- */
-void write_cptr(int coff, int clen, opj_cio_t *cio);
-
-
-/* 
- * Write main header index table (box)
- *
- * @param[in] coff offset of j2k codestream
- * @param[in] cstr_info codestream information
- * @param[in] cio  file output handle
- * @return         length of mainmhix box
- */
-int write_mainmhix( int coff, opj_codestream_info_t cstr_info, opj_cio_t *cio);
-
-
-/* 
- * Check if EPH option is used
- *
- * @param[in] coff    offset of j2k codestream
- * @param[in] markers marker information
- * @param[in] marknum number of markers
- * @param[in] cio     file output handle
- * @return            true if EPH is used
- */
-opj_bool check_EPHuse( int coff, opj_marker_info_t *markers, int marknum, opj_cio_t *cio);
-
-
-int write_cidx( int offset, opj_cio_t *cio, opj_image_t *image, opj_codestream_info_t cstr_info, int j2klen)
-{
-  int len, i, lenp;
-  opj_jp2_box_t *box;
-  int num_box = 0;
-  opj_bool  EPHused;
-  (void)image; /* unused ? */
-
-  lenp = -1;
-  box = (opj_jp2_box_t *)opj_calloc( 32, sizeof(opj_jp2_box_t));
-
-  for (i=0;i<2;i++){
-  
-    if(i)
-      cio_seek( cio, lenp);
-
-    lenp = cio_tell( cio);
-
-    cio_skip( cio, 4);              /* L [at the end] */
-    cio_write( cio, JPIP_CIDX, 4);  /* CIDX           */
-    write_cptr( offset, cstr_info.codestream_size, cio);
-
-    write_manf( i, num_box, box, cio);
-    
-    num_box = 0;
-    box[num_box].length = write_mainmhix( offset, cstr_info, cio);
-    box[num_box].type = JPIP_MHIX;
-    num_box++;
-
-    box[num_box].length = write_tpix( offset, cstr_info, j2klen, cio);
-    box[num_box].type = JPIP_TPIX;
-    num_box++;
-      
-    box[num_box].length = write_thix( offset, cstr_info, cio);
-    box[num_box].type = JPIP_THIX;
-    num_box++;
-
-    EPHused = check_EPHuse( offset, cstr_info.marker, cstr_info.marknum, cio);
-      
-    box[num_box].length = write_ppix( offset, cstr_info, EPHused, j2klen, cio);
-    box[num_box].type = JPIP_PPIX;
-    num_box++;
-    
-    box[num_box].length = write_phix( offset, cstr_info, EPHused, j2klen, cio);
-    box[num_box].type = JPIP_PHIX;
-    num_box++;
-      
-    len = cio_tell( cio)-lenp;
-    cio_seek( cio, lenp);
-    cio_write( cio, len, 4);        /* L             */
-    cio_seek( cio, lenp+len);
-  }
-
-  opj_free( box);
-  
-  return len;
-}
-
-void write_cptr(int coff, int clen, opj_cio_t *cio)
-{
-  int len, lenp;
-
-  lenp = cio_tell( cio);
-  cio_skip( cio, 4);               /* L [at the end]     */
-  cio_write( cio, JPIP_CPTR, 4);   /* T                  */
-  cio_write( cio, 0, 2);           /* DR  A PRECISER !!  */
-  cio_write( cio, 0, 2);           /* CONT               */
-  cio_write( cio, coff, 8);    /* COFF A PRECISER !! */
-  cio_write( cio, clen, 8);    /* CLEN               */
-  len = cio_tell( cio) - lenp;
-  cio_seek( cio, lenp);
-  cio_write( cio, len, 4);         /* L                  */
-  cio_seek( cio, lenp+len);
-}
-
-void write_manf(int second, int v, opj_jp2_box_t *box, opj_cio_t *cio)
-{
-  int len, lenp, i;
-  
-  lenp = cio_tell( cio); 
-  cio_skip( cio, 4);                         /* L [at the end]                    */
-  cio_write( cio, JPIP_MANF,4);              /* T                                 */
-
-  if (second){                          /* Write only during the second pass */
-    for( i=0; i<v; i++){
-      cio_write( cio, box[i].length, 4);  /* Box length                     */ 
-      cio_write( cio, box[i].type, 4); /* Box type                       */
-    }
-  }
-
-  len = cio_tell( cio) - lenp;
-  cio_seek( cio, lenp);
-  cio_write( cio, len, 4);                   /* L                                 */
-  cio_seek( cio, lenp+len);
-}
-
-int write_mainmhix( int coff, opj_codestream_info_t cstr_info, opj_cio_t *cio)
-{
-  int i;
-  int len, lenp;
-  
-  lenp = cio_tell( cio);
-  cio_skip( cio, 4);                               /* L [at the end]                    */
-  cio_write( cio, JPIP_MHIX, 4);                   /* MHIX                              */
-
-  cio_write( cio, cstr_info.main_head_end-cstr_info.main_head_start+1, 8);        /* TLEN                              */
-
-  for(i = 1; i < cstr_info.marknum; i++){    /* Marker restricted to 1 apparition, skip SOC marker */
-    cio_write( cio, cstr_info.marker[i].type, 2);
-    cio_write( cio, 0, 2);
-    cio_write( cio, cstr_info.marker[i].pos-coff, 8);
-    cio_write( cio, cstr_info.marker[i].len, 2);
-  }
-
-  len = cio_tell( cio) - lenp;
-  cio_seek( cio, lenp);
-  cio_write( cio, len, 4);        /* L           */
-  cio_seek( cio, lenp+len);
-  
-  return len;
-}
-
-opj_bool check_EPHuse( int coff, opj_marker_info_t *markers, int marknum, opj_cio_t *cio)
-{
-  opj_bool EPHused = OPJ_FALSE;
-  int i=0;
-  int org_pos;
-  unsigned int Scod;
-
-  for(i = 0; i < marknum; i++){
-    if( markers[i].type == J2K_MS_COD){
-      org_pos = cio_tell( cio);
-      cio_seek( cio, coff+markers[i].pos+2);
-      
-      Scod = cio_read( cio, 1);
-      if( ((Scod >> 2) & 1))
-	EPHused = OPJ_TRUE;
-      cio_seek( cio, org_pos);
-
-      break;
-    }
-  }    
-  return EPHused;
-}

libopenjpeg/jpwl/CMakeLists.txt

@@ -1,32 +0,0 @@
-# Makefile for the main JPWL OpenJPEG codecs: JPWL_ j2k_to_image and JPWL_image_to_j2k
-
-ADD_DEFINITIONS(-DUSE_JPWL)
-
-SET(JPWL_SRCS crc.c jpwl.c jpwl_lib.c rs.c)
-IF(APPLE)
-  SET_SOURCE_FILES_PROPERTIES(
-    rs.c
-    PROPERTIES
-    COMPILE_FLAGS -fno-common)
-ENDIF(APPLE)
-
-INCLUDE_DIRECTORIES(
-  ${OPENJPEG_SOURCE_DIR}/libopenjpeg
-  )
-
-# Build the library
-IF(WIN32)
-  IF(BUILD_SHARED_LIBS)
-    ADD_DEFINITIONS(-DOPJ_EXPORTS)
-  ELSE(BUILD_SHARED_LIBS)
-    ADD_DEFINITIONS(-DOPJ_STATIC)
-  ENDIF(BUILD_SHARED_LIBS)
-ENDIF(WIN32)
-ADD_LIBRARY(${OPENJPEG_LIBRARY_NAME}_JPWL ${JPWL_SRCS} ${OPENJPEG_SRCS})
-SET_TARGET_PROPERTIES(${OPENJPEG_LIBRARY_NAME}_JPWL 
-  PROPERTIES ${OPENJPEG_LIBRARY_PROPERTIES})
-
-# Install library
-INSTALL(TARGETS ${OPENJPEG_LIBRARY_NAME}_JPWL
-  DESTINATION ${OPENJPEG_INSTALL_LIB_DIR} COMPONENT Libraries
-)

libopenjpeg/jpwl/Makefile.am

@@ -1,77 +0,0 @@
-MAINTAINERCLEANFILES = Makefile.in
-
-lib_LTLIBRARIES = libopenjpeg_JPWL.la
-
-OPJ_SRC = \
-../bio.c \
-../cio.c \
-../dwt.c \
-../event.c \
-../image.c \
-../j2k.c \
-../j2k_lib.c \
-../jp2.c \
-../jpt.c \
-../mct.c \
-../mqc.c \
-../openjpeg.c \
-../pi.c \
-../raw.c \
-../t1.c \
-../t1_generate_luts.c \
-../t2.c \
-../tcd.c \
-../tgt.c \
-../cidx_manager.c \
-../phix_manager.c \
-../ppix_manager.c \
-../thix_manager.c \
-../tpix_manager.c
-
-libopenjpeg_JPWL_la_CPPFLAGS = \
--I. \
--I$(top_srcdir)/libopenjpeg \
--I$(top_builddir)/libopenjpeg \
--I$(top_srcdir)/libopenjpeg/jpwl \
--I$(top_builddir)/libopenjpeg/jpwl \
--DUSE_JPWL
-libopenjpeg_JPWL_la_CFLAGS =
-libopenjpeg_JPWL_la_LIBADD = -lm
-libopenjpeg_JPWL_la_LDFLAGS = -no-undefined -version-info @lt_version@
-libopenjpeg_JPWL_la_SOURCES = \
-$(OPJ_SRC) \
-crc.c \
-jpwl.c \
-jpwl_lib.c \
-rs.c \
-crc.h \
-jpwl.h \
-rs.h
-
-install-data-hook:
-	@echo -e " (LA)\t$(libdir)/libopenjpeg_JPWL.la" >> $(top_builddir)/report.txt
-if BUILD_SHARED
-	@( $(call solist) ) >> $(top_builddir)/report.txt
-endif
-if BUILD_STATIC
-	@echo -e " (A)\t$(base)/$(a)" >> $(top_builddir)/report.txt
-endif
-
-solist    = $(foreach f, $(dll) $(so), echo -e ' $(SO_PREFIX)\t$(base)/$(f)' ;)
-get_tok   = $(shell grep -E "^$(1)=" $(lib_LTLIBRARIES) | cut -d "'" -f 2)
-base      = $(call get_tok,libdir)
-so        = $(call get_tok,library_names)
-a         = $(call get_tok,old_library)
-
-if HAVE_WIN32
-SO_PREFIX = (DLL)
-dll       = $(call get_tok,dlname)
-else
-if HAVE_DARWIN
-SO_PREFIX = (DY)
-dll       =
-else
-SO_PREFIX = (SO)
-dll       =
-endif
-endif

libopenjpeg/phix_manager.c

@@ -1,170 +0,0 @@
-/*
- * $Id: phix_manager.c 897 2011-08-28 21:43:57Z Kaori.Hagihara@gmail.com $
- *
- * Copyright (c) 2002-2011, Communications and Remote Sensing Laboratory, Universite catholique de Louvain (UCL), Belgium
- * Copyright (c) 2002-2011, Professor Benoit Macq
- * Copyright (c) 2003-2004, Yannick Verschueren
- * Copyright (c) 2010-2011, Kaori Hagihara
- * All rights reserved.
- *
- * Redistribution and use in source and binary forms, with or without
- * modification, are permitted provided that the following conditions
- * are met:
- * 1. Redistributions of source code must retain the above copyright
- *    notice, this list of conditions and the following disclaimer.
- * 2. Redistributions in binary form must reproduce the above copyright
- *    notice, this list of conditions and the following disclaimer in the
- *    documentation and/or other materials provided with the distribution.
- *
- * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS `AS IS'
- * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
- * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
- * ARE DISCLAIMED.  IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
- * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
- * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
- * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
- * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
- * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
- * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
- * POSSIBILITY OF SUCH DAMAGE.
- */
-
-/*! \file
- *  \brief Modification of jpip.c from 2KAN indexer
- */
-
-#include <stdlib.h>
-#include <math.h>
-#include "opj_includes.h"
-
-/* 
- * Write faix box of phix
- *
- * @param[in] coff      offset of j2k codestream
- * @param[in] compno    component number
- * @param[in] cstr_info codestream information
- * @param[in] EPHused   true if if EPH option used
- * @param[in] j2klen    length of j2k codestream
- * @param[in] cio       file output handle
- * @return              length of faix box
- */
-int write_phixfaix( int coff, int compno, opj_codestream_info_t cstr_info, opj_bool EPHused, int j2klen, opj_cio_t *cio);
-
-int write_phix( int coff, opj_codestream_info_t cstr_info, opj_bool EPHused, int j2klen, opj_cio_t *cio)
-{
-  int len, lenp=0, compno, i;
-  opj_jp2_box_t *box;
-
-  box = (opj_jp2_box_t *)opj_calloc( cstr_info.numcomps, sizeof(opj_jp2_box_t));
-  
-  for( i=0;i<2;i++){
-    if (i) cio_seek( cio, lenp);
-      
-    lenp = cio_tell( cio);
-    cio_skip( cio, 4);              /* L [at the end] */
-    cio_write( cio, JPIP_PHIX, 4);  /* PHIX           */
-      
-    write_manf( i, cstr_info.numcomps, box, cio);
-
-    for( compno=0; compno<cstr_info.numcomps; compno++){       
-      box[compno].length = write_phixfaix( coff, compno, cstr_info, EPHused, j2klen, cio);
-      box[compno].type = JPIP_FAIX;
-    }
-
-    len = cio_tell( cio)-lenp;
-    cio_seek( cio, lenp);
-    cio_write( cio, len, 4);        /* L              */
-    cio_seek( cio, lenp+len);
-  }
-
-  opj_free(box);
-
-  return len;
-}
-
-int write_phixfaix( int coff, int compno, opj_codestream_info_t cstr_info, opj_bool EPHused, int j2klen, opj_cio_t *cio)
-{
-  int len, lenp, tileno, version, i, nmax, size_of_coding; /* 4 or 8 */
-  opj_tile_info_t *tile_Idx;
-  opj_packet_info_t packet;
-  int resno, precno, layno, num_packet;
-  int numOfres, numOfprec, numOflayers;
-  packet.end_ph_pos = packet.start_pos = -1;
-  (void)EPHused; /* unused ? */
-
-  if( j2klen > pow( 2, 32)){
-    size_of_coding =  8;
-    version = 1;
-  }
-  else{
-    size_of_coding = 4;
-    version = 0;
-  }
-
-  lenp = cio_tell( cio);
-  cio_skip( cio, 4);              /* L [at the end]      */
-  cio_write( cio, JPIP_FAIX, 4);  /* FAIX                */ 
-  cio_write( cio, version,1);     /* Version 0 = 4 bytes */
-
-  nmax = 0;
-  for( i=0; i<=cstr_info.numdecompos[compno]; i++)
-    nmax += cstr_info.tile[0].ph[i] * cstr_info.tile[0].pw[i] * cstr_info.numlayers;
-  
-  cio_write( cio, nmax, size_of_coding); /* NMAX */
-  cio_write( cio, cstr_info.tw*cstr_info.th, size_of_coding);      /* M    */
-  
-  for( tileno=0; tileno<cstr_info.tw*cstr_info.th; tileno++){
-    tile_Idx = &cstr_info.tile[ tileno];
-    
-    num_packet = 0;
-    numOfres = cstr_info.numdecompos[compno] + 1;
-
-    for( resno=0; resno<numOfres ; resno++){
-      numOfprec = tile_Idx->pw[resno]*tile_Idx->ph[resno];
-      for( precno=0; precno<numOfprec; precno++){
-	numOflayers = cstr_info.numlayers;
-	for( layno=0; layno<numOflayers; layno++){
-	  
-	  switch ( cstr_info.prog){
-	  case LRCP:
-	    packet = tile_Idx->packet[ ((layno*numOfres+resno)*cstr_info.numcomps+compno)*numOfprec+precno];
-	    break;
-	  case RLCP:
-	    packet = tile_Idx->packet[ ((resno*numOflayers+layno)*cstr_info.numcomps+compno)*numOfprec+precno];
-	    break;
-	  case RPCL:
-	    packet = tile_Idx->packet[ ((resno*numOfprec+precno)*cstr_info.numcomps+compno)*numOflayers+layno];
-	    break;
-	  case PCRL:
-	    packet = tile_Idx->packet[ ((precno*cstr_info.numcomps+compno)*numOfres+resno)*numOflayers + layno];
-	    break;
-	  case CPRL:
-	    packet = tile_Idx->packet[ ((compno*numOfprec+precno)*numOfres+resno)*numOflayers + layno];
-	    break;
-	  default:
-	    fprintf( stderr, "failed to ppix indexing\n");
-	  }
-
-	  cio_write( cio, packet.start_pos-coff, size_of_coding);                /* start position */
-	  cio_write( cio, packet.end_ph_pos-packet.start_pos+1, size_of_coding); /* length         */
-	  
-	  num_packet++;
-	}
-      }
-    }
-
-    /* PADDING */
-    while( num_packet < nmax){
-      cio_write( cio, 0, size_of_coding); /* start position            */
-      cio_write( cio, 0, size_of_coding); /* length                    */
-      num_packet++;
-    }
-  }
-
-  len = cio_tell( cio)-lenp;
-  cio_seek( cio, lenp);
-  cio_write( cio, len, 4);        /* L  */
-  cio_seek( cio, lenp+len);
-
-  return len;
-}

libopenjpeg/thix_manager.c

@@ -1,120 +0,0 @@
-/*
- * $Id: thix_manager.c 897 2011-08-28 21:43:57Z Kaori.Hagihara@gmail.com $
- *
- * Copyright (c) 2002-2011, Communications and Remote Sensing Laboratory, Universite catholique de Louvain (UCL), Belgium
- * Copyright (c) 2002-2011, Professor Benoit Macq
- * Copyright (c) 2003-2004, Yannick Verschueren
- * Copyright (c) 2010-2011, Kaori Hagihara
- * All rights reserved.
- *
- * Redistribution and use in source and binary forms, with or without
- * modification, are permitted provided that the following conditions
- * are met:
- * 1. Redistributions of source code must retain the above copyright
- *    notice, this list of conditions and the following disclaimer.
- * 2. Redistributions in binary form must reproduce the above copyright
- *    notice, this list of conditions and the following disclaimer in the
- *    documentation and/or other materials provided with the distribution.
- *
- * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS `AS IS'
- * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
- * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
- * ARE DISCLAIMED.  IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
- * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
- * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
- * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
- * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
- * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
- * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
- * POSSIBILITY OF SUCH DAMAGE.
- */
-
-/*! \file
- *  \brief Modification of jpip.c from 2KAN indexer
- */
-
-#include <stdlib.h>
-#include <stdio.h>
-#include <string.h>
-#include "opj_includes.h"
-
-/* 
- * Write tile-part headers mhix box
- *
- * @param[in] coff      offset of j2k codestream
- * @param[in] cstr_info codestream information
- * @param[in] tileno    tile number
- * @param[in] cio       file output handle
- * @return              length of mhix box
- */
-int write_tilemhix( int coff, opj_codestream_info_t cstr_info, int tileno, opj_cio_t *cio);
-
-int write_thix( int coff, opj_codestream_info_t cstr_info, opj_cio_t *cio)
-{
-  int len, lenp, i;
-  int tileno;
-  opj_jp2_box_t *box;
-
-  lenp = 0;
-  box = (opj_jp2_box_t *)opj_calloc( cstr_info.tw*cstr_info.th, sizeof(opj_jp2_box_t));
-
-  for ( i = 0; i < 2 ; i++ ){
-    if (i)
-      cio_seek( cio, lenp);
-
-    lenp = cio_tell( cio);
-    cio_skip( cio, 4);              /* L [at the end] */
-    cio_write( cio, JPIP_THIX, 4);  /* THIX           */
-    write_manf( i, cstr_info.tw*cstr_info.th, box, cio);
-    
-    for (tileno = 0; tileno < cstr_info.tw*cstr_info.th; tileno++){
-      box[tileno].length = write_tilemhix( coff, cstr_info, tileno, cio);
-      box[tileno].type = JPIP_MHIX;
-    }
- 
-    len = cio_tell( cio)-lenp;
-    cio_seek( cio, lenp);
-    cio_write( cio, len, 4);        /* L              */
-    cio_seek( cio, lenp+len);
-  }
-
-  opj_free(box);
-
-  return len;
-}
-
-int write_tilemhix( int coff, opj_codestream_info_t cstr_info, int tileno, opj_cio_t *cio)
-{
-  int i;
-  opj_tile_info_t tile;
-  opj_tp_info_t tp;
-  int len, lenp;
-  opj_marker_info_t *marker;
-
-  lenp = cio_tell( cio);
-  cio_skip( cio, 4);                               /* L [at the end]                    */
-  cio_write( cio, JPIP_MHIX, 4);                   /* MHIX                              */
-
-  tile = cstr_info.tile[tileno];
-  tp = tile.tp[0];
-
-  cio_write( cio, tp.tp_end_header-tp.tp_start_pos+1, 8);  /* TLEN                              */ 
-
-  marker = cstr_info.tile[tileno].marker;
-
-  for( i=0; i<cstr_info.tile[tileno].marknum; i++){             /* Marker restricted to 1 apparition */
-    cio_write( cio, marker[i].type, 2);
-    cio_write( cio, 0, 2);
-    cio_write( cio, marker[i].pos-coff, 8);
-    cio_write( cio, marker[i].len, 2);
-  }
-     
-  /*  free( marker);*/
-
-  len = cio_tell( cio) - lenp;
-  cio_seek( cio, lenp);
-  cio_write( cio, len, 4);        /* L           */
-  cio_seek( cio, lenp+len);
-
-  return len;
-}

libopenjpeg/tpix_manager.c

@@ -1,153 +0,0 @@
-/*
- * $Id: tpix_manager.c 897 2011-08-28 21:43:57Z Kaori.Hagihara@gmail.com $
- *
- * Copyright (c) 2002-2011, Communications and Remote Sensing Laboratory, Universite catholique de Louvain (UCL), Belgium
- * Copyright (c) 2002-2011, Professor Benoit Macq
- * Copyright (c) 2003-2004, Yannick Verschueren
- * Copyright (c) 2010-2011, Kaori Hagihara
- * All rights reserved.
- *
- * Redistribution and use in source and binary forms, with or without
- * modification, are permitted provided that the following conditions
- * are met:
- * 1. Redistributions of source code must retain the above copyright
- *    notice, this list of conditions and the following disclaimer.
- * 2. Redistributions in binary form must reproduce the above copyright
- *    notice, this list of conditions and the following disclaimer in the
- *    documentation and/or other materials provided with the distribution.
- *
- * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS `AS IS'
- * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
- * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
- * ARE DISCLAIMED.  IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
- * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
- * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
- * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
- * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
- * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
- * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
- * POSSIBILITY OF SUCH DAMAGE.
- */
-
-/*! \file
- *  \brief Modification of jpip.c from 2KAN indexer
- */
-
-#include <math.h>
-#include "opj_includes.h"
-
-#define MAX(a,b) ((a)>(b)?(a):(b))
-
-
-/* 
- * Write faix box of tpix
- *
- * @param[in] coff offset of j2k codestream
- * @param[in] compno    component number
- * @param[in] cstr_info codestream information
- * @param[in] j2klen    length of j2k codestream
- * @param[in] cio       file output handle
- * @return              length of faix box
- */
-int write_tpixfaix( int coff, int compno, opj_codestream_info_t cstr_info, int j2klen, opj_cio_t *cio);
-
-
-int write_tpix( int coff, opj_codestream_info_t cstr_info, int j2klen, opj_cio_t *cio)
-{
-  int len, lenp;
-  lenp = cio_tell( cio);
-  cio_skip( cio, 4);              /* L [at the end] */
-  cio_write( cio, JPIP_TPIX, 4);  /* TPIX           */
-  
-  write_tpixfaix( coff, 0, cstr_info, j2klen, cio);
-
-  len = cio_tell( cio)-lenp;
-  cio_seek( cio, lenp);
-  cio_write( cio, len, 4);        /* L              */
-  cio_seek( cio, lenp+len);
-
-  return len;
-}
-
-
-/* 
- * Get number of maximum tile parts per tile
- *
- * @param[in] cstr_info codestream information
- * @return              number of maximum tile parts per tile
- */
-int get_num_max_tile_parts( opj_codestream_info_t cstr_info);
-
-int write_tpixfaix( int coff, int compno, opj_codestream_info_t cstr_info, int j2klen, opj_cio_t *cio)
-{
-  int len, lenp;
-  int i, j;
-  int Aux;
-  int num_max_tile_parts;
-  int size_of_coding; /* 4 or 8 */
-  opj_tp_info_t tp;
-  int version;
-
-  num_max_tile_parts = get_num_max_tile_parts( cstr_info);
-
-  if( j2klen > pow( 2, 32)){
-    size_of_coding =  8;
-    version = num_max_tile_parts == 1 ? 1:3;
-  }
-  else{
-    size_of_coding = 4;
-    version = num_max_tile_parts == 1 ? 0:2;
-  }
-
-  lenp = cio_tell( cio);
-  cio_skip( cio, 4);              /* L [at the end]      */
-  cio_write( cio, JPIP_FAIX, 4);  /* FAIX                */ 
-  cio_write( cio, version, 1);     /* Version 0 = 4 bytes */
-
-  cio_write( cio, num_max_tile_parts, size_of_coding);                      /* NMAX           */
-  cio_write( cio, cstr_info.tw*cstr_info.th, size_of_coding);                               /* M              */
-  for (i = 0; i < cstr_info.tw*cstr_info.th; i++){
-    for (j = 0; j < cstr_info.tile[i].num_tps; j++){
-      tp = cstr_info.tile[i].tp[j];
-      cio_write( cio, tp.tp_start_pos-coff, size_of_coding); /* start position */
-      cio_write( cio, tp.tp_end_pos-tp.tp_start_pos+1, size_of_coding);    /* length         */
-      if (version & 0x02){
-	if( cstr_info.tile[i].num_tps == 1 && cstr_info.numdecompos[compno] > 1)
-	  Aux = cstr_info.numdecompos[compno] + 1;
-	else
-	  Aux = j + 1;
-		  
-	cio_write( cio, Aux,4);
-	/*cio_write(img.tile[i].tile_parts[j].num_reso_AUX,4);*/ /* Aux_i,j : Auxiliary value */
-	/* fprintf(stderr,"AUX value %d\n",Aux);*/
-      }
-      /*cio_write(0,4);*/
-    }
-    /* PADDING */
-    while (j < num_max_tile_parts){
-      cio_write( cio, 0, size_of_coding); /* start position            */
-      cio_write( cio, 0, size_of_coding); /* length                    */
-      if (version & 0x02)
-	cio_write( cio, 0,4);                  /* Aux_i,j : Auxiliary value */
-      j++;
-    }
-  }
-  
-  len = cio_tell( cio)-lenp;
-  cio_seek( cio, lenp);
-  cio_write( cio, len, 4);        /* L  */
-  cio_seek( cio, lenp+len);
-
-  return len;
-
-}
-
-int get_num_max_tile_parts( opj_codestream_info_t cstr_info)
-{
-  int num_max_tp = 0, i;
-
-  for( i=0; i<cstr_info.tw*cstr_info.th; i++)
-    num_max_tp = MAX( cstr_info.tile[i].num_tps, num_max_tp);
-  
-  return num_max_tp;
-}

libopenjpeg1.pc.cmake

@@ -1,12 +0,0 @@
-prefix=@CMAKE_INSTALL_PREFIX@
-bindir=@OPENJPEG_INSTALL_BIN_DIR@
-datadir=@OPENJPEG_INSTALL_DATA_DIR@
-libdir=@OPENJPEG_INSTALL_LIB_DIR@
-includedir=@OPENJPEG_INSTALL_INCLUDE_DIR@
-
-Name: openjpeg
-Description: JPEG2000 files library
-URL: http://www.openjpeg.org/ 
-Version: @OPENJPEG_VERSION@
-Libs: -L${libdir} -lopenjpeg
-Cflags: -I${includedir}

libopenjpeg1.pc.in

@@ -1,13 +0,0 @@
-prefix=@prefix@
-exec_prefix=@exec_prefix@
-libdir=@libdir@
-includedir=@includedir@
-
-Name: openjpeg
-Description: JPEG2000 library
-URL: http://www.openjpeg.org/
-Version: @VERSION@
-@pkgconfig_requires_private@: @requirements@
-Libs: -L${libdir} -lopenjpeg
-Libs.private: -lm
-Cflags: -I${includedir}

m4/opj_check_lib.m4

@@ -1,128 +0,0 @@
-dnl Copyright (C) 2011 Vincent Torri <vtorri at univ-evry dot fr>
-dnl That code is public domain and can be freely used or copied.
-
-dnl Macro that check if a library is in a specified directory.
-
-dnl Usage: OPJ_CHECK_LIB_WITH_PREFIX(prefix, header, lib, func [, ACTION-IF-FOUND [, ACTION-IF-NOT-FOUND]])
-dnl Call AC_SUBST(THELIB_CFLAGS)
-dnl Call AC_SUBST(THELIB_LIBS)
-dnl where THELIB is the uppercase value of 'lib'
-
-AC_DEFUN([OPJ_CHECK_LIB_WITH_PREFIX],
-[
-
-m4_pushdef([UP], m4_toupper([$3]))
-m4_pushdef([DOWN], m4_tolower([$3]))
-
-__opj_prefix=$1
-__opj_header=$2
-__opj_lib=$3
-__opj_func=$4
-__opj_have_dep="no"
-
-save_CPPFLAGS=${CPPFLAGS}
-save_LDFLAGS=${LDFLAGS}
-save_LIBS=${LIBS}
-
-if test "x${__opj_prefix}" = "x" ; then
-   CPPFLAGS="${CPPFLAGS} $UP[_CFLAGS]"
-   LDFLAGS="${LDFLAGS} $UP[_LIBS]"
-else
-   CPPFLAGS="${CPPFLAGS} -I${__opj_prefix}/include"
-   LDFLAGS="${LDFLAGS} -L${__opj_prefix}/lib"
-   LIBS="${LIBS} -l${__opj_lib}"
-fi
-
-AC_LINK_IFELSE(
-   [AC_LANG_PROGRAM(
-       [[
-#include <${__opj_header}>
-       ]],
-       [[
-${__opj_func}();
-       ]])],
-       [__opj_have_dep="yes"],
-       [__opj_have_dep="no"])
-
-CPPFLAGS=${save_CPPFLAGS}
-LDFLAGS=${save_LDFLAGS}
-LIBS=${save_LIBS}
-
-if test "x${__opj_prefix}" = "x" ; then
-   AC_MSG_CHECKING([whether ]UP[ library is available in standard or predefined directories])
-else
-   AC_MSG_CHECKING([whether ]UP[ library is available in ${__opj_prefix}])
-fi
-AC_MSG_RESULT([${__opj_have_dep}])
-
-if test "x${__opj_have_dep}" = "xyes" && ! test "x${__opj_prefix}" = "x"; then
-   if test "x${UP[]_CFLAGS}" = "x" ; then
-      UP[]_CFLAGS="-I${__opj_prefix}/include"
-   fi
-   if test "x${UP[]_LIBS}" = "x" ; then
-      UP[]_LIBS="-L${__opj_prefix}/lib -l${__opj_lib}"
-   fi
-fi
-
-AS_IF([test "x${__opj_have_dep}" = "xyes"], [$5], [$6])
-
-m4_popdef([UP])
-m4_popdef([DOWN])
-
-])
-
-dnl Macro that check if a library is in a set of directories.
-
-dnl Usage: OPJ_CHECK_LIB(header, lib, func [, ACTION-IF-FOUND [, ACTION-IF-NOT-FOUND]])
-
-AC_DEFUN([OPJ_CHECK_LIB],
-[
-
-m4_pushdef([UP], m4_toupper([$2]))
-
-__opj_have_dep="no"
-
-OPJ_CHECK_LIB_WITH_PREFIX([],
-   [$1],
-   [$2],
-   [$3],
-   [__opj_have_dep="yes"],
-   [__opj_have_dep="no"])
-
-if ! test "x${__opj_have_dep}" = "xyes" ; then
-   OPJ_CHECK_LIB_WITH_PREFIX([/usr],
-      [$1],
-      [$2],
-      [$3],
-      [__opj_have_dep="yes"],
-      [__opj_have_dep="no"])
-fi
-
-if ! test "x${__opj_have_dep}" = "xyes" ; then
-   OPJ_CHECK_LIB_WITH_PREFIX([/usr/local],
-      [$1],
-      [$2],
-      [$3],
-      [__opj_have_dep="yes"],
-      [__opj_have_dep="no"])
-fi
-
-if ! test "x${__opj_have_dep}" = "xyes" ; then
-   OPJ_CHECK_LIB_WITH_PREFIX([/opt/local],
-      [$1],
-      [$2],
-      [$3],
-      [__opj_have_dep="yes"],
-      [__opj_have_dep="no"])
-fi
-
-AC_ARG_VAR(UP[_CFLAGS], [preprocessor flags for lib$2])
-AC_SUBST(UP[_CFLAGS])
-AC_ARG_VAR(UP[_LIBS], [linker flags for lib$2])
-AC_SUBST(UP[_LIBS])
-
-AS_IF([test "x${__opj_have_dep}" = "xyes"], [$4], [$5])
-
-m4_popdef([UP])
-
-])

m4/opj_compiler_flag.m4

@@ -1,30 +0,0 @@
-dnl Copyright (C) 2010 Vincent Torri <vtorri at univ-evry dot fr>
-dnl                and Albin Tonnerre <albin dot tonnerre at gmail dot com>
-dnl That code is public domain and can be freely used or copied.
-
-dnl Macro that checks if a compiler flag is supported by the compiler.
-
-dnl Usage: OPJ_COMPILER_FLAG(flag)
-dnl flag is added to CFLAGS if supported.
-
-AC_DEFUN([OPJ_COMPILER_FLAG],
-[
-
-CFLAGS_save="${CFLAGS}"
-CFLAGS="${CFLAGS} $1"
-
-AC_LANG_PUSH([C])
-AC_MSG_CHECKING([whether the compiler supports $1])
-
-AC_COMPILE_IFELSE(
-   [AC_LANG_PROGRAM([[]])],
-   [have_flag="yes"],
-   [have_flag="no"])
-AC_MSG_RESULT([${have_flag}])
-
-if test "x${have_flag}" = "xno" ; then
-   CFLAGS="${CFLAGS_save}"
-fi
-AC_LANG_POP([C])
-
-])

m4/opj_doxygen.m4

@@ -1,94 +0,0 @@
-dnl Copyright (C) 2008 Vincent Torri <vtorri at univ-evry dot fr>
-dnl That code is public domain and can be freely used or copied.
-
-dnl Macro that check if doxygen is available or not.
-
-dnl OPJ_CHECK_DOXYGEN([ACTION-IF-FOUND [, ACTION-IF-NOT-FOUND]])
-dnl Test for the doxygen program
-dnl Defines opj_doxygen
-dnl Defines the automake conditionnal OPJ_BUILD_DOC
-dnl
-AC_DEFUN([OPJ_CHECK_DOXYGEN],
-[
-
-dnl
-dnl Disable the build of the documentation
-dnl
-AC_ARG_ENABLE([doc],
-   [AC_HELP_STRING(
-       [--disable-doc],
-       [Disable documentation build @<:@default=enabled@:>@])],
-   [
-    if test "x${enableval}" = "xyes" ; then
-       opj_enable_doc="yes"
-    else
-       opj_enable_doc="no"
-    fi
-   ],
-   [opj_enable_doc="yes"])
-
-AC_MSG_CHECKING([whether to build documentation])
-AC_MSG_RESULT([${opj_enable_doc}])
-
-if test "x${opj_enable_doc}" = "xyes" ; then
-
-dnl Specify the file name, without path
-
-   opj_doxygen="doxygen"
-
-   AC_ARG_WITH([doxygen],
-      [AC_HELP_STRING(
-          [--with-doxygen=FILE],
-          [doxygen program to use @<:@default=doxygen@:>@])],
-
-dnl Check the given doxygen program.
-
-      [opj_doxygen=${withval}
-       AC_CHECK_PROG([opj_have_doxygen],
-          [${opj_doxygen}],
-          [yes],
-          [no])
-       if test "x${opj_have_doxygen}" = "xno" ; then
-          echo "WARNING:"
-          echo "The doxygen program you specified:"
-          echo "${opj_doxygen}"
-          echo "was not found.  Please check the path and make sure "
-          echo "the program exists and is executable."
-          AC_MSG_WARN([no doxygen detected. Documentation will not be built])
-       fi
-      ],
-      [AC_CHECK_PROG([opj_have_doxygen],
-          [${opj_doxygen}],
-          [yes],
-          [no])
-       if test "x${opj_have_doxygen}" = "xno" ; then
-          echo "WARNING:"
-          echo "The doxygen program was not found in your execute path."
-          echo "You may have doxygen installed somewhere not covered by your path."
-          echo ""
-          echo "If this is the case make sure you have the packages installed, AND"
-          echo "that the doxygen program is in your execute path (see your"
-          echo "shell manual page on setting the \$PATH environment variable), OR"
-          echo "alternatively, specify the program to use with --with-doxygen."
-          AC_MSG_WARN([no doxygen detected. Documentation will not be built])
-       fi
-      ])
-else
-   opj_have_doxygen="no"
-fi
-
-dnl
-dnl Substitution
-dnl
-AC_SUBST([opj_doxygen])
-
-if ! test "x${opj_have_doxygen}" = "xyes" ; then
-   opj_enable_doc="no"
-fi
-
-AM_CONDITIONAL(OPJ_BUILD_DOC, test "x${opj_have_doxygen}" = "xyes")
-
-AS_IF([test "x${opj_have_doxygen}" = "xyes"], [$1], [$2])
-])
-
-dnl End of opj_doxygen.m4

m4/pkg.m4

@@ -1,157 +0,0 @@
-# pkg.m4 - Macros to locate and utilise pkg-config.            -*- Autoconf -*-
-# serial 1 (pkg-config-0.24)
-# 
-# Copyright © 2004 Scott James Remnant <scott@netsplit.com>.
-#
-# This program is free software; you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation; either version 2 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful, but
-# WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-# General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program; if not, write to the Free Software
-# Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
-#
-# As a special exception to the GNU General Public License, if you
-# distribute this file as part of a program that contains a
-# configuration script generated by Autoconf, you may include it under
-# the same distribution terms that you use for the rest of that program.
-
-# PKG_PROG_PKG_CONFIG([MIN-VERSION])
-# ----------------------------------
-AC_DEFUN([PKG_PROG_PKG_CONFIG],
-[m4_pattern_forbid([^_?PKG_[A-Z_]+$])
-m4_pattern_allow([^PKG_CONFIG(_PATH)?$])
-AC_ARG_VAR([PKG_CONFIG], [path to pkg-config utility])
-AC_ARG_VAR([PKG_CONFIG_PATH], [directories to add to pkg-config's search path])
-AC_ARG_VAR([PKG_CONFIG_LIBDIR], [path overriding pkg-config's built-in search path])
-
-if test "x$ac_cv_env_PKG_CONFIG_set" != "xset"; then
-	AC_PATH_TOOL([PKG_CONFIG], [pkg-config])
-fi
-if test -n "$PKG_CONFIG"; then
-	_pkg_min_version=m4_default([$1], [0.9.0])
-	AC_MSG_CHECKING([pkg-config is at least version $_pkg_min_version])
-	if $PKG_CONFIG --atleast-pkgconfig-version $_pkg_min_version; then
-		AC_MSG_RESULT([yes])
-	else
-		AC_MSG_RESULT([no])
-		PKG_CONFIG=""
-	fi
-fi[]dnl
-])# PKG_PROG_PKG_CONFIG
-
-# PKG_CHECK_EXISTS(MODULES, [ACTION-IF-FOUND], [ACTION-IF-NOT-FOUND])
-#
-# Check to see whether a particular set of modules exists.  Similar
-# to PKG_CHECK_MODULES(), but does not set variables or print errors.
-#
-# Please remember that m4 expands AC_REQUIRE([PKG_PROG_PKG_CONFIG])
-# only at the first occurence in configure.ac, so if the first place
-# it's called might be skipped (such as if it is within an "if", you
-# have to call PKG_CHECK_EXISTS manually
-# --------------------------------------------------------------
-AC_DEFUN([PKG_CHECK_EXISTS],
-[AC_REQUIRE([PKG_PROG_PKG_CONFIG])dnl
-if test -n "$PKG_CONFIG" && \
-    AC_RUN_LOG([$PKG_CONFIG --exists --print-errors "$1"]); then
-  m4_default([$2], [:])
-m4_ifvaln([$3], [else
-  $3])dnl
-fi])
-
-# _PKG_CONFIG([VARIABLE], [COMMAND], [MODULES])
-# ---------------------------------------------
-m4_define([_PKG_CONFIG],
-[if test -n "$$1"; then
-    pkg_cv_[]$1="$$1"
- elif test -n "$PKG_CONFIG"; then
-    PKG_CHECK_EXISTS([$3],
-                     [pkg_cv_[]$1=`$PKG_CONFIG --[]$2 "$3" 2>/dev/null`],
-		     [pkg_failed=yes])
- else
-    pkg_failed=untried
-fi[]dnl
-])# _PKG_CONFIG
-
-# _PKG_SHORT_ERRORS_SUPPORTED
-# -----------------------------
-AC_DEFUN([_PKG_SHORT_ERRORS_SUPPORTED],
-[AC_REQUIRE([PKG_PROG_PKG_CONFIG])
-if $PKG_CONFIG --atleast-pkgconfig-version 0.20; then
-        _pkg_short_errors_supported=yes
-else
-        _pkg_short_errors_supported=no
-fi[]dnl
-])# _PKG_SHORT_ERRORS_SUPPORTED
-
-
-# PKG_CHECK_MODULES(VARIABLE-PREFIX, MODULES, [ACTION-IF-FOUND],
-# [ACTION-IF-NOT-FOUND])
-#
-#
-# Note that if there is a possibility the first call to
-# PKG_CHECK_MODULES might not happen, you should be sure to include an
-# explicit call to PKG_PROG_PKG_CONFIG in your configure.ac
-#
-#
-# --------------------------------------------------------------
-AC_DEFUN([PKG_CHECK_MODULES],
-[AC_REQUIRE([PKG_PROG_PKG_CONFIG])dnl
-AC_ARG_VAR([$1][_CFLAGS], [C compiler flags for $1, overriding pkg-config])dnl
-AC_ARG_VAR([$1][_LIBS], [linker flags for $1, overriding pkg-config])dnl
-
-pkg_failed=no
-AC_MSG_CHECKING([for $1])
-
-_PKG_CONFIG([$1][_CFLAGS], [cflags], [$2])
-_PKG_CONFIG([$1][_LIBS], [libs], [$2])
-
-m4_define([_PKG_TEXT], [Alternatively, you may set the environment variables $1[]_CFLAGS
-and $1[]_LIBS to avoid the need to call pkg-config.
-See the pkg-config man page for more details.])
-
-if test $pkg_failed = yes; then
-   	AC_MSG_RESULT([no])
-        _PKG_SHORT_ERRORS_SUPPORTED
-        if test $_pkg_short_errors_supported = yes; then
-	        $1[]_PKG_ERRORS=`$PKG_CONFIG --short-errors --print-errors "$2" 2>&1`
-        else 
-	        $1[]_PKG_ERRORS=`$PKG_CONFIG --print-errors "$2" 2>&1`
-        fi
-	# Put the nasty error message in config.log where it belongs
-	echo "$$1[]_PKG_ERRORS" >&AS_MESSAGE_LOG_FD
-
-	m4_default([$4], [AC_MSG_ERROR(
-[Package requirements ($2) were not met:
-
-$$1_PKG_ERRORS
-
-Consider adjusting the PKG_CONFIG_PATH environment variable if you
-installed software in a non-standard prefix.
-
-_PKG_TEXT])dnl
-        ])
-elif test $pkg_failed = untried; then
-     	AC_MSG_RESULT([no])
-	m4_default([$4], [AC_MSG_FAILURE(
-[The pkg-config script could not be found or is too old.  Make sure it
-is in your PATH or set the PKG_CONFIG environment variable to the full
-path to pkg-config.
-
-_PKG_TEXT
-
-To get pkg-config, see <http://pkg-config.freedesktop.org/>.])dnl
-        ])
-else
-	$1[]_CFLAGS=$pkg_cv_[]$1[]_CFLAGS
-	$1[]_LIBS=$pkg_cv_[]$1[]_LIBS
-        AC_MSG_RESULT([yes])
-	$3
-fi[]dnl
-])# PKG_CHECK_MODULES

opj_config.h.cmake.in

@@ -1,35 +0,0 @@
-/* create config.h for CMake */
-#define PACKAGE_VERSION "@PACKAGE_VERSION@"
-
-#cmakedefine HAVE_INTTYPES_H
-#cmakedefine HAVE_MEMORY_H
-#cmakedefine HAVE_STDINT_H
-#cmakedefine HAVE_STDLIB_H
-#cmakedefine HAVE_STRINGS_H
-#cmakedefine HAVE_STRING_H
-#cmakedefine HAVE_SYS_STAT_H
-#cmakedefine HAVE_SYS_TYPES_H
-#cmakedefine HAVE_UNISTD_H
-#cmakedefine HAVE_LIBPNG
-#cmakedefine HAVE_PNG_H
-#cmakedefine HAVE_LIBTIFF
-#cmakedefine HAVE_TIFF_H
-
-#cmakedefine HAVE_LIBLCMS1
-#cmakedefine HAVE_LIBLCMS2
-#cmakedefine HAVE_LCMS1_H
-#cmakedefine HAVE_LCMS2_H
-
-/* Byte order.  */
-/* All compilers that support Mac OS X define either __BIG_ENDIAN__ or
-__LITTLE_ENDIAN__ to match the endianness of the architecture being
-compiled for. This is not necessarily the same as the architecture of the
-machine doing the building. In order to support Universal Binaries on
-Mac OS X, we prefer those defines to decide the endianness.
-On other platforms we use the result of the TRY_RUN. */
-#if !defined(__APPLE__)
-#cmakedefine OPJ_BIG_ENDIAN
-#elif defined(__BIG_ENDIAN__)
-# define OPJ_BIG_ENDIAN
-#endif
-

src/CMakeLists.txt

@@ -0,0 +1,12 @@
+# required dep for server:
+#if(BUILD_JPIP_SERVER)
+#  find_package(CURL REQUIRED)
+#  find_package(FCGI REQUIRED)
+#  find_package(Threads REQUIRED)
+#  if(NOT CMAKE_USE_PTHREADS_INIT)
+#    message(FATAL_ERROR "Only pthread are supported")
+#  endif()
+#endif()
+
+#add_subdirectory(lib)
+#add_subdirectory(bin)

src/bin/CMakeLists.txt

@@ -0,0 +1,21 @@
+# source code for openjpeg apps:
+add_subdirectory(common)
+# Part 1 & 2:
+add_subdirectory(jp2)
+
+# optionals components:
+if(BUILD_JPWL)
+  add_subdirectory(jpwl)
+endif()
+if(BUILD_MJ2)
+  add_subdirectory(mj2)
+endif()
+if(BUILD_JPIP)
+  add_subdirectory(jpip)
+endif()
+if(BUILD_JP3D)
+  add_subdirectory(jp3d)
+endif()
+
+# wx apps:
+add_subdirectory(wx)

src/bin/common/CMakeLists.txt

@@ -0,0 +1,7 @@
+#-----------------------------------------------------------------------------
+# opj_apps_config.h generation 
+configure_file(
+ ${CMAKE_CURRENT_SOURCE_DIR}/opj_apps_config.h.cmake.in
+ ${CMAKE_CURRENT_BINARY_DIR}/opj_apps_config.h
+ @ONLY
+ )

src/bin/common/color.c

@@ -1,9 +1,15 @@
 /*
- * Copyright (c) 2002-2007, Communications and Remote Sensing Laboratory, Universite catholique de Louvain (UCL), Belgium
- * Copyright (c) 2002-2007, Professor Benoit Macq
+ * The copyright in this software is being made available under the 2-clauses 
+ * BSD License, included below. This software may be subject to other third 
+ * party and contributor rights, including patent rights, and no such rights
+ * are granted under this license.
+ *
+ * Copyright (c) 2002-2014, Universite catholique de Louvain (UCL), Belgium
+ * Copyright (c) 2002-2014, Professor Benoit Macq
  * Copyright (c) 2001-2003, David Janssens
  * Copyright (c) 2002-2003, Yannick Verschueren
- * Copyright (c) 2003-2007, Francois-Olivier Devaux and Antonin Descampe
+ * Copyright (c) 2003-2007, Francois-Olivier Devaux 
+ * Copyright (c) 2003-2014, Antonin Descampe
  * Copyright (c) 2005, Herve Drolon, FreeImage Team
  * All rights reserved.
  *
@@ -33,20 +39,26 @@
 #include <string.h>
 #include <stdlib.h>
 #include <math.h>
+#include <assert.h>
 
-#include "opj_config.h"
+#include "opj_apps_config.h"
 #include "openjpeg.h"
 #include "color.h"
 
-#ifdef HAVE_LIBLCMS2
+#ifdef OPJ_HAVE_LIBLCMS2
 #include <lcms2.h>
 #endif
-#ifdef HAVE_LIBLCMS1
+#ifdef OPJ_HAVE_LIBLCMS1
 #include <lcms.h>
 #endif
 
+#ifdef OPJ_USE_LEGACY
+#define OPJ_CLRSPC_GRAY CLRSPC_GRAY
+#define OPJ_CLRSPC_SRGB CLRSPC_SRGB
+#endif
+
 /*--------------------------------------------------------
-Matrix für sYCC, Amendment 1 to IEC 61966-2-1
+Matrix for sYCC, Amendment 1 to IEC 61966-2-1
 
 Y :   0.299   0.587    0.114   :R
 Cb:  -0.1687 -0.3312   0.5     :G
@@ -81,19 +93,19 @@ static void sycc444_to_rgb(opj_image_t *img)
 	const int *y, *cb, *cr;
 	int maxw, maxh, max, i, offset, upb;
 
-	i = img->comps[0].prec;
+	i = (int)img->comps[0].prec;
 	offset = 1<<(i - 1); upb = (1<<i)-1;
 
-	maxw = img->comps[0].w; maxh = img->comps[0].h;
+	maxw = (int)img->comps[0].w; maxh = (int)img->comps[0].h;
 	max = maxw * maxh;
 
 	y = img->comps[0].data;
 	cb = img->comps[1].data;
 	cr = img->comps[2].data;
 
-	d0 = r = (int*)malloc(sizeof(int) * max);
-	d1 = g = (int*)malloc(sizeof(int) * max);
-	d2 = b = (int*)malloc(sizeof(int) * max);
+	d0 = r = (int*)malloc(sizeof(int) * (size_t)max);
+	d1 = g = (int*)malloc(sizeof(int) * (size_t)max);
+	d2 = b = (int*)malloc(sizeof(int) * (size_t)max);
 
 	for(i = 0; i < max; ++i)
    {
@@ -114,19 +126,19 @@ static void sycc422_to_rgb(opj_image_t *img)
 	int maxw, maxh, max, offset, upb;
 	int i, j;
 
-	i = img->comps[0].prec;
+	i = (int)img->comps[0].prec;
 	offset = 1<<(i - 1); upb = (1<<i)-1;
 
-	maxw = img->comps[0].w; maxh = img->comps[0].h;
+	maxw = (int)img->comps[0].w; maxh = (int)img->comps[0].h;
 	max = maxw * maxh;
 
 	y = img->comps[0].data;
 	cb = img->comps[1].data;
 	cr = img->comps[2].data;
 
-	d0 = r = (int*)malloc(sizeof(int) * max);
-	d1 = g = (int*)malloc(sizeof(int) * max);
-	d2 = b = (int*)malloc(sizeof(int) * max);
+	d0 = r = (int*)malloc(sizeof(int) * (size_t)max);
+	d1 = g = (int*)malloc(sizeof(int) * (size_t)max);
+	d2 = b = (int*)malloc(sizeof(int) * (size_t)max);
 
 	for(i=0; i < maxh; ++i)
    {
@@ -145,8 +157,13 @@ static void sycc422_to_rgb(opj_image_t *img)
 	free(img->comps[1].data); img->comps[1].data = d1;
 	free(img->comps[2].data); img->comps[2].data = d2;
 
+#if defined(USE_JPWL) || defined(USE_MJ2)
 	img->comps[1].w = maxw; img->comps[1].h = maxh;
 	img->comps[2].w = maxw; img->comps[2].h = maxh;
+#else
+	img->comps[1].w = (OPJ_UINT32)maxw; img->comps[1].h = (OPJ_UINT32)maxh;
+	img->comps[2].w = (OPJ_UINT32)maxw; img->comps[2].h = (OPJ_UINT32)maxh;
+#endif
 	img->comps[1].dx = img->comps[0].dx;
 	img->comps[2].dx = img->comps[0].dx;
 	img->comps[1].dy = img->comps[0].dy;
@@ -161,19 +178,19 @@ static void sycc420_to_rgb(opj_image_t *img)
 	int maxw, maxh, max, offset, upb;
 	int i, j;
 
-	i = img->comps[0].prec;
+	i = (int)img->comps[0].prec;
 	offset = 1<<(i - 1); upb = (1<<i)-1;
 
-	maxw = img->comps[0].w; maxh = img->comps[0].h;
+	maxw = (int)img->comps[0].w; maxh = (int)img->comps[0].h;
 	max = maxw * maxh;
 
 	y = img->comps[0].data;
 	cb = img->comps[1].data;
 	cr = img->comps[2].data;
 
-	d0 = r = (int*)malloc(sizeof(int) * max);
-	d1 = g = (int*)malloc(sizeof(int) * max);
-	d2 = b = (int*)malloc(sizeof(int) * max);
+	d0 = r = (int*)malloc(sizeof(int) * (size_t)max);
+	d1 = g = (int*)malloc(sizeof(int) * (size_t)max);
+	d2 = b = (int*)malloc(sizeof(int) * (size_t)max);
 
 	for(i=0; i < maxh; i += 2)
    {
@@ -204,8 +221,13 @@ static void sycc420_to_rgb(opj_image_t *img)
 	free(img->comps[1].data); img->comps[1].data = d1;
 	free(img->comps[2].data); img->comps[2].data = d2;
 
+#if defined(USE_JPWL) || defined(USE_MJ2)
 	img->comps[1].w = maxw; img->comps[1].h = maxh;
 	img->comps[2].w = maxw; img->comps[2].h = maxh;
+#else
+	img->comps[1].w = (OPJ_UINT32)maxw; img->comps[1].h = (OPJ_UINT32)maxh;
+	img->comps[2].w = (OPJ_UINT32)maxw; img->comps[2].h = (OPJ_UINT32)maxh;
+#endif
 	img->comps[1].dx = img->comps[0].dx;
 	img->comps[2].dx = img->comps[0].dx;
 	img->comps[1].dy = img->comps[0].dy;
@@ -217,7 +239,7 @@ void color_sycc_to_rgb(opj_image_t *img)
 {
 	if(img->numcomps < 3) 
    {
-	img->color_space = CLRSPC_GRAY;
+	img->color_space = OPJ_CLRSPC_GRAY;
 	return;
    }
 
@@ -256,12 +278,12 @@ void color_sycc_to_rgb(opj_image_t *img)
 	 __FILE__,__LINE__);
 	return;
   }
-	img->color_space = CLRSPC_SRGB;
+	img->color_space = OPJ_CLRSPC_SRGB;
 
 }/* color_sycc_to_rgb() */
 
-#if defined(HAVE_LIBLCMS2) || defined(HAVE_LIBLCMS1)
-#ifdef HAVE_LIBLCMS1
+#if defined(OPJ_HAVE_LIBLCMS2) || defined(OPJ_HAVE_LIBLCMS1)
+#ifdef OPJ_HAVE_LIBLCMS1
 /* Bob Friesenhahn proposed:*/
 #define cmsSigXYZData   icSigXYZData
 #define cmsSigLabData   icSigLabData
@@ -275,8 +297,9 @@ void color_sycc_to_rgb(opj_image_t *img)
 #define cmsColorSpaceSignature icColorSpaceSignature
 #define cmsGetHeaderRenderingIntent cmsTakeRenderingIntent
 
-#endif /* HAVE_LIBLCMS1 */
+#endif /* OPJ_HAVE_LIBLCMS1 */
 
+/*#define DEBUG_PROFILE*/
 void color_apply_icc_profile(opj_image_t *image)
 {
 	cmsHPROFILE in_prof, out_prof;
@@ -289,6 +312,11 @@ void color_apply_icc_profile(opj_image_t *image)
 
 	in_prof = 
 	 cmsOpenProfileFromMem(image->icc_profile_buf, image->icc_profile_len);
+#ifdef DEBUG_PROFILE
+  FILE *icm = fopen("debug.icm","wb");
+  fwrite( image->icc_profile_buf,1, image->icc_profile_len,icm);
+  fclose(icm);
+#endif
 
 	if(in_prof == NULL) return;
 
@@ -297,16 +325,25 @@ void color_apply_icc_profile(opj_image_t *image)
 	intent = cmsGetHeaderRenderingIntent(in_prof);
 
 	
-	max_w = image->comps[0].w; max_h = image->comps[0].h;
-	prec = image->comps[0].prec;
+	max_w = (int)image->comps[0].w;
+  max_h = (int)image->comps[0].h;
+	prec = (int)image->comps[0].prec;
 	oldspace = image->color_space;
 
 	if(out_space == cmsSigRgbData) /* enumCS 16 */
    {
+  if( prec <= 8 )
+{
+	in_type = TYPE_RGB_8;
+	out_type = TYPE_RGB_8;
+}
+else
+{
 	in_type = TYPE_RGB_16;
 	out_type = TYPE_RGB_16;
+}
 	out_prof = cmsCreate_sRGBProfile();
-	image->color_space = CLRSPC_SRGB;
+	image->color_space = OPJ_CLRSPC_SRGB;
    }
 	else
 	if(out_space == cmsSigGrayData) /* enumCS 17 */
@@ -314,7 +351,7 @@ void color_apply_icc_profile(opj_image_t *image)
 	in_type = TYPE_GRAY_8;
 	out_type = TYPE_RGB_8;
 	out_prof = cmsCreate_sRGBProfile();
-	image->color_space = CLRSPC_SRGB;
+	image->color_space = OPJ_CLRSPC_SRGB;
    }
 	else
 	if(out_space == cmsSigYCbCrData) /* enumCS 18 */
@@ -322,7 +359,7 @@ void color_apply_icc_profile(opj_image_t *image)
 	in_type = TYPE_YCbCr_16;
 	out_type = TYPE_RGB_16;
 	out_prof = cmsCreate_sRGBProfile();
-	image->color_space = CLRSPC_SRGB;
+	image->color_space = OPJ_CLRSPC_SRGB;
    }
 	else
    {
@@ -355,12 +392,15 @@ out_space,
 
 in_type,out_type
  );
+#else
+  (void)prec;
+  (void)in_space;
 #endif /* DEBUG_PROFILE */
 
 	transform = cmsCreateTransform(in_prof, in_type,
 	 out_prof, out_type, intent, 0);
 
-#ifdef HAVE_LIBLCMS2
+#ifdef OPJ_HAVE_LIBLCMS2
 /* Possible for: LCMS_VERSION >= 2000 :*/
 	cmsCloseProfile(in_prof);
 	cmsCloseProfile(out_prof);
@@ -373,7 +413,7 @@ fprintf(stderr,"%s:%d:color_apply_icc_profile\n\tcmsCreateTransform failed. "
 "ICC Profile ignored.\n",__FILE__,__LINE__);
 #endif
 	image->color_space = oldspace;
-#ifdef HAVE_LIBLCMS1
+#ifdef OPJ_HAVE_LIBLCMS1
 	cmsCloseProfile(in_prof);
 	cmsCloseProfile(out_prof);
 #endif
@@ -382,8 +422,44 @@ fprintf(stderr,"%s:%d:color_apply_icc_profile\n\tcmsCreateTransform failed. "
 
 	if(image->numcomps > 2)/* RGB, RGBA */
    {
+  if( prec <= 8 )
+{
+	unsigned char *inbuf, *outbuf, *in, *out;
+	max = max_w * max_h;
+  nr_samples = (cmsUInt32Number)max * 3 * (cmsUInt32Number)sizeof(unsigned char);
+	in = inbuf = (unsigned char*)malloc(nr_samples);
+	out = outbuf = (unsigned char*)malloc(nr_samples);
+
+	r = image->comps[0].data;
+	g = image->comps[1].data;
+	b = image->comps[2].data;
+
+	for(i = 0; i < max; ++i)
+  {
+	*in++ = (unsigned char)*r++;
+	*in++ = (unsigned char)*g++;
+	*in++ = (unsigned char)*b++;
+  }
+
+	cmsDoTransform(transform, inbuf, outbuf, (cmsUInt32Number)max);
+
+	r = image->comps[0].data;
+	g = image->comps[1].data;
+	b = image->comps[2].data;
+
+	for(i = 0; i < max; ++i)
+  {
+	*r++ = (int)*out++;
+	*g++ = (int)*out++;
+	*b++ = (int)*out++;
+  }
+	free(inbuf); free(outbuf);
+}
+else
+{
 	unsigned short *inbuf, *outbuf, *in, *out;
-	max = max_w * max_h; nr_samples = max * 3 * sizeof(unsigned short);
+	max = max_w * max_h;
+  nr_samples = (cmsUInt32Number)max * 3 * (cmsUInt32Number)sizeof(unsigned short);
 	in = inbuf = (unsigned short*)malloc(nr_samples);
 	out = outbuf = (unsigned short*)malloc(nr_samples);
 
@@ -398,7 +474,7 @@ fprintf(stderr,"%s:%d:color_apply_icc_profile\n\tcmsCreateTransform failed. "
 	*in++ = (unsigned short)*b++;
   }
 
-	cmsDoTransform(transform, inbuf, outbuf, max);
+	cmsDoTransform(transform, inbuf, outbuf, (cmsUInt32Number)max);
 
 	r = image->comps[0].data;
 	g = image->comps[1].data;
@@ -411,12 +487,13 @@ fprintf(stderr,"%s:%d:color_apply_icc_profile\n\tcmsCreateTransform failed. "
 	*b++ = (int)*out++;
   }
 	free(inbuf); free(outbuf);
+}
    }
 	else /* GRAY, GRAYA */
    {
 	unsigned char *in, *inbuf, *out, *outbuf;
-
-	max = max_w * max_h; nr_samples = max * 3 * sizeof(unsigned char);
+  max = max_w * max_h;
+  nr_samples = (cmsUInt32Number)max * 3 * sizeof(unsigned char);
 	in = inbuf = (unsigned char*)malloc(nr_samples);
 	out = outbuf = (unsigned char*)malloc(nr_samples);
 
@@ -429,8 +506,8 @@ fprintf(stderr,"%s:%d:color_apply_icc_profile\n\tcmsCreateTransform failed. "
 	image->comps[1] = image->comps[0];
 	image->comps[2] = image->comps[0];
 
-	image->comps[1].data = (int*)calloc(max, sizeof(int));
-	image->comps[2].data = (int*)calloc(max, sizeof(int));
+	image->comps[1].data = (int*)calloc((size_t)max, sizeof(int));
+	image->comps[2].data = (int*)calloc((size_t)max, sizeof(int));
 
 	image->numcomps += 2;
 
@@ -440,7 +517,7 @@ fprintf(stderr,"%s:%d:color_apply_icc_profile\n\tcmsCreateTransform failed. "
   {
 	*in++ = (unsigned char)*r++;
   }
-	cmsDoTransform(transform, inbuf, outbuf, max);
+	cmsDoTransform(transform, inbuf, outbuf, (cmsUInt32Number)max);
 
 	r = image->comps[0].data;
 	g = image->comps[1].data;
@@ -456,11 +533,11 @@ fprintf(stderr,"%s:%d:color_apply_icc_profile\n\tcmsCreateTransform failed. "
 
 	cmsDeleteTransform(transform);
 
-#ifdef HAVE_LIBLCMS1
+#ifdef OPJ_HAVE_LIBLCMS1
 	cmsCloseProfile(in_prof);
 	cmsCloseProfile(out_prof);
 #endif
 }/* color_apply_icc_profile() */
 
-#endif /* HAVE_LIBLCMS2 || HAVE_LIBLCMS1 */
+#endif /* OPJ_HAVE_LIBLCMS2 || OPJ_HAVE_LIBLCMS1 */
 

src/bin/common/color.h

@@ -1,9 +1,15 @@
 /*
- * Copyright (c) 2002-2007, Communications and Remote Sensing Laboratory, Universite catholique de Louvain (UCL), Belgium
- * Copyright (c) 2002-2007, Professor Benoit Macq
+ * The copyright in this software is being made available under the 2-clauses 
+ * BSD License, included below. This software may be subject to other third 
+ * party and contributor rights, including patent rights, and no such rights
+ * are granted under this license.
+ *
+ * Copyright (c) 2002-2014, Universite catholique de Louvain (UCL), Belgium
+ * Copyright (c) 2002-2014, Professor Benoit Macq
  * Copyright (c) 2001-2003, David Janssens
  * Copyright (c) 2002-2003, Yannick Verschueren
- * Copyright (c) 2003-2007, Francois-Olivier Devaux and Antonin Descampe
+ * Copyright (c) 2003-2007, Francois-Olivier Devaux 
+ * Copyright (c) 2003-2014, Antonin Descampe
  * Copyright (c) 2005, Herve Drolon, FreeImage Team
  * All rights reserved.
  *

src/bin/common/format_defs.h

@@ -1,9 +1,15 @@
 /*
- * Copyright (c) 2002-2007, Communications and Remote Sensing Laboratory, Universite catholique de Louvain (UCL), Belgium
- * Copyright (c) 2002-2007, Professor Benoit Macq
+ * The copyright in this software is being made available under the 2-clauses 
+ * BSD License, included below. This software may be subject to other third 
+ * party and contributor rights, including patent rights, and no such rights
+ * are granted under this license.
+ *
+ * Copyright (c) 2002-2014, Universite catholique de Louvain (UCL), Belgium
+ * Copyright (c) 2002-2014, Professor Benoit Macq
  * Copyright (c) 2001-2003, David Janssens
  * Copyright (c) 2002-2003, Yannick Verschueren
- * Copyright (c) 2003-2007, Francois-Olivier Devaux and Antonin Descampe
+ * Copyright (c) 2003-2007, Francois-Olivier Devaux 
+ * Copyright (c) 2003-2014, Antonin Descampe
  * Copyright (c) 2005, Herve Drolon, FreeImage Team
  * All rights reserved.
  *
@@ -41,8 +47,9 @@
 #define BMP_DFMT 12
 #define YUV_DFMT 13
 #define TIF_DFMT 14
-#define RAW_DFMT 15
+#define RAW_DFMT 15 /* MSB / Big Endian */
 #define TGA_DFMT 16
 #define PNG_DFMT 17
+#define RAWL_DFMT 18 /* LSB / Little Endian */
 
 #endif /* _OPJ_FORMAT_DEFS_H_ */

src/bin/common/opj_apps_config.h.cmake.in

@@ -0,0 +1,15 @@
+#include "opj_config_private.h"
+
+/* create opj_apps_config.h for CMake */
+
+#cmakedefine OPJ_HAVE_LIBPNG @HAVE_LIBPNG@
+#cmakedefine OPJ_HAVE_PNG_H @HAVE_PNG_H@
+#cmakedefine OPJ_HAVE_LIBTIFF @HAVE_LIBTIFF@
+#cmakedefine OPJ_HAVE_TIFF_H @HAVE_TIFF_H@
+
+#cmakedefine OPJ_HAVE_LIBLCMS1
+#cmakedefine OPJ_HAVE_LIBLCMS2
+#cmakedefine OPJ_HAVE_LCMS1_H
+#cmakedefine OPJ_HAVE_LCMS2_H
+
+

src/bin/common/opj_getopt.c

@@ -1,4 +1,9 @@
 /*
+ * The copyright in this software is being made available under the 3-clauses 
+ * BSD License, included below. This software may be subject to other third 
+ * party and contributor rights, including patent rights, and no such rights
+ * are granted under this license.
+ *
  * Copyright (c) 1987, 1993, 1994
  *	The Regents of the University of California.  All rights reserved.
  *
@@ -10,11 +15,7 @@
  * 2. Redistributions in binary form must reproduce the above copyright
  *    notice, this list of conditions and the following disclaimer in the
  *    documentation and/or other materials provided with the distribution.
- * 3. All advertising materials mentioning features or use of this software
- *    must display the following acknowledgement:
- *	This product includes software developed by the University of
- *	California, Berkeley and its contributors.
- * 4. Neither the name of the University nor the names of its contributors
+ * 3. Neither the name of the University nor the names of its contributors
  *    may be used to endorse or promote products derived from this software
  *    without specific prior written permission.
  *

src/bin/jp2/CMakeLists.txt

@@ -0,0 +1,63 @@
+# Build the demo app, small examples
+
+# First thing define the common source:
+set(common_SRCS
+  convert.c
+  index.c
+  ${OPENJPEG_SOURCE_DIR}/src/bin/common/color.c
+  ${OPENJPEG_SOURCE_DIR}/src/bin/common/opj_getopt.c
+  )
+
+# Headers file are located here:
+include_directories(
+  ${OPENJPEG_BINARY_DIR}/src/lib/openjp2 # opj_config.h
+  ${OPENJPEG_BINARY_DIR}/src/bin/common # opj_apps_config.h
+  ${OPENJPEG_SOURCE_DIR}/src/lib/openjp2
+  ${OPENJPEG_SOURCE_DIR}/src/bin/common
+  ${LCMS_INCLUDE_DIRNAME}
+  ${Z_INCLUDE_DIRNAME}
+  ${PNG_INCLUDE_DIRNAME}
+  ${TIFF_INCLUDE_DIRNAME}
+  )
+
+if(WIN32)
+  if(BUILD_SHARED_LIBS)
+    add_definitions(-DOPJ_EXPORTS)
+  else()
+    add_definitions(-DOPJ_STATIC)
+  endif()
+endif()
+
+# Loop over all executables:
+foreach(exe opj_decompress opj_compress opj_dump)
+  add_executable(${exe} ${exe}.c ${common_SRCS})
+  target_link_libraries(${exe} ${OPENJPEG_LIBRARY_NAME}
+    ${PNG_LIBNAME} ${TIFF_LIBNAME} ${LCMS_LIBNAME}
+    )
+  # To support universal exe:
+  if(ZLIB_FOUND AND APPLE)
+    target_link_libraries(${exe} z)
+  else(ZLIB_FOUND AND APPLE)
+    target_link_libraries(${exe} ${Z_LIBNAME})
+  endif()
+
+  # On unix you need to link to the math library:
+  if(UNIX)
+    target_link_libraries(${exe} m)
+  endif()
+  # Install exe
+  install(TARGETS ${exe}
+    EXPORT OpenJPEGTargets
+    DESTINATION ${OPENJPEG_INSTALL_BIN_DIR} COMPONENT Applications
+  )
+endforeach()
+
+if(BUILD_DOC)
+# Install man pages
+install(
+  FILES       ${OPENJPEG_SOURCE_DIR}/doc/man/man1/opj_compress.1
+              ${OPENJPEG_SOURCE_DIR}/doc/man/man1/opj_decompress.1
+              ${OPENJPEG_SOURCE_DIR}/doc/man/man1/opj_dump.1
+  DESTINATION ${OPENJPEG_INSTALL_MAN_DIR}/man1)
+#
+endif()

src/bin/jp2/convert.h

@@ -0,0 +1,102 @@
+/*
+ * The copyright in this software is being made available under the 2-clauses 
+ * BSD License, included below. This software may be subject to other third 
+ * party and contributor rights, including patent rights, and no such rights
+ * are granted under this license.
+ *
+ * Copyright (c) 2002-2014, Universite catholique de Louvain (UCL), Belgium
+ * Copyright (c) 2002-2014, Professor Benoit Macq
+ * Copyright (c) 2001-2003, David Janssens
+ * Copyright (c) 2002-2003, Yannick Verschueren
+ * Copyright (c) 2003-2007, Francois-Olivier Devaux 
+ * Copyright (c) 2003-2014, Antonin Descampe
+ * Copyright (c) 2005, Herve Drolon, FreeImage Team
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions
+ * are met:
+ * 1. Redistributions of source code must retain the above copyright
+ *    notice, this list of conditions and the following disclaimer.
+ * 2. Redistributions in binary form must reproduce the above copyright
+ *    notice, this list of conditions and the following disclaimer in the
+ *    documentation and/or other materials provided with the distribution.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS `AS IS'
+ * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED.  IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
+ * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+ * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+ * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+ * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+ * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+ * POSSIBILITY OF SUCH DAMAGE.
+ */
+#ifndef __J2K_CONVERT_H
+#define __J2K_CONVERT_H
+
+/**@name RAW component encoding parameters */
+/*@{*/
+typedef struct raw_comp_cparameters {
+    /** subsampling in X direction */
+    int dx;
+    /** subsampling in Y direction */
+    int dy;
+    /*@}*/
+} raw_comp_cparameters_t;
+
+/**@name RAW image encoding parameters */
+/*@{*/
+typedef struct raw_cparameters {
+	/** width of the raw image */
+	int rawWidth;
+	/** height of the raw image */
+	int rawHeight;
+    /** number of components of the raw image */
+	int rawComp;
+    /** bit depth of the raw image */
+    int rawBitDepth;
+    /** signed/unsigned raw image */
+    OPJ_BOOL rawSigned;
+    /** raw components parameters */
+    raw_comp_cparameters_t *rawComps;
+	/*@}*/
+} raw_cparameters_t;
+
+/* TGA conversion */
+opj_image_t* tgatoimage(const char *filename, opj_cparameters_t *parameters);
+int imagetotga(opj_image_t * image, const char *outfile);
+
+/* BMP conversion */
+opj_image_t* bmptoimage(const char *filename, opj_cparameters_t *parameters);
+int imagetobmp(opj_image_t *image, const char *outfile);
+
+/* TIFF conversion*/
+opj_image_t* tiftoimage(const char *filename, opj_cparameters_t *parameters);
+int imagetotif(opj_image_t *image, const char *outfile);
+/**
+Load a single image component encoded in PGX file format
+@param filename Name of the PGX file to load
+@param parameters *List ?*
+@return Returns a greyscale image if successful, returns NULL otherwise
+*/
+opj_image_t* pgxtoimage(const char *filename, opj_cparameters_t *parameters);
+int imagetopgx(opj_image_t *image, const char *outfile);
+
+opj_image_t* pnmtoimage(const char *filename, opj_cparameters_t *parameters);
+int imagetopnm(opj_image_t *image, const char *outfile);
+
+/* RAW conversion */
+int imagetoraw(opj_image_t * image, const char *outfile);
+int imagetorawl(opj_image_t * image, const char *outfile);
+opj_image_t* rawtoimage(const char *filename, opj_cparameters_t *parameters, raw_cparameters_t *raw_cp);
+opj_image_t* rawltoimage(const char *filename, opj_cparameters_t *parameters, raw_cparameters_t *raw_cp);
+
+/* PNG conversion*/
+extern int imagetopng(opj_image_t *image, const char *write_idf);
+extern opj_image_t* pngtoimage(const char *filename, opj_cparameters_t *parameters);
+
+#endif /* __J2K_CONVERT_H */
+

src/bin/jp2/index.c

@@ -0,0 +1,397 @@
+/*
+ * The copyright in this software is being made available under the 2-clauses 
+ * BSD License, included below. This software may be subject to other third 
+ * party and contributor rights, including patent rights, and no such rights
+ * are granted under this license.
+ *
+ * Copyright (c) 2002-2014, Universite catholique de Louvain (UCL), Belgium
+ * Copyright (c) 2002-2014, Professor Benoit Macq
+ * Copyright (c) 2003-2007, Francois-Olivier Devaux 
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions
+ * are met:
+ * 1. Redistributions of source code must retain the above copyright
+ *    notice, this list of conditions and the following disclaimer.
+ * 2. Redistributions in binary form must reproduce the above copyright
+ *    notice, this list of conditions and the following disclaimer in the
+ *    documentation and/or other materials provided with the distribution.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS `AS IS'
+ * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED.  IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
+ * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+ * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+ * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+ * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+ * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+ * POSSIBILITY OF SUCH DAMAGE.
+ */
+
+#include <stdio.h>
+#include <math.h>
+#include <string.h>
+#include "openjpeg.h"
+#include "index.h"
+#include "opj_inttypes.h"
+
+/* ------------------------------------------------------------------------------------ */
+
+/**
+Write a structured index to a file
+@param cstr_info Codestream information 
+@param index Index filename
+@return Returns 0 if successful, returns 1 otherwise
+*/
+int write_index_file(opj_codestream_info_t *cstr_info, char *index) {
+	int tileno, compno, layno, resno, precno, pack_nb, x, y;
+	FILE *stream = NULL;
+	double total_disto = 0;
+/* UniPG>> */
+	int tilepartno;
+	char disto_on, numpix_on;
+
+#ifdef USE_JPWL
+	if (!strcmp(index, JPWL_PRIVATEINDEX_NAME))
+		return 0;
+#endif /* USE_JPWL */
+/* <<UniPG */
+
+	if (!cstr_info)		
+		return 1;
+
+	stream = fopen(index, "w");
+	if (!stream) {
+		fprintf(stderr, "failed to open index file [%s] for writing\n", index);
+		return 1;
+	}
+	
+	if (cstr_info->tile[0].distotile)
+		disto_on = 1;
+	else 
+		disto_on = 0;
+
+	if (cstr_info->tile[0].numpix)
+		numpix_on = 1;
+	else 
+		numpix_on = 0;
+
+	fprintf(stream, "%d %d\n", cstr_info->image_w, cstr_info->image_h);
+	fprintf(stream, "%d\n", cstr_info->prog);
+	fprintf(stream, "%d %d\n", cstr_info->tile_x, cstr_info->tile_y);
+	fprintf(stream, "%d %d\n", cstr_info->tw, cstr_info->th);
+	fprintf(stream, "%d\n", cstr_info->numcomps);
+	fprintf(stream, "%d\n", cstr_info->numlayers);
+	fprintf(stream, "%d\n", cstr_info->numdecompos[0]); /* based on component 0 */
+
+	for (resno = cstr_info->numdecompos[0]; resno >= 0; resno--) {
+		fprintf(stream, "[%d,%d] ", 
+			(1 << cstr_info->tile[0].pdx[resno]), (1 << cstr_info->tile[0].pdx[resno]));	/* based on tile 0 and component 0 */
+	}
+
+	fprintf(stream, "\n");
+/* UniPG>> */
+	fprintf(stream, "%d\n", cstr_info->main_head_start);
+/* <<UniPG */
+	fprintf(stream, "%d\n", cstr_info->main_head_end);
+	fprintf(stream, "%d\n", cstr_info->codestream_size);
+	
+	fprintf(stream, "\nINFO ON TILES\n");
+	fprintf(stream, "tileno start_pos  end_hd  end_tile   nbparts");
+	if (disto_on)
+		fprintf(stream,"         disto");
+	if (numpix_on)
+		fprintf(stream,"     nbpix");
+	if (disto_on && numpix_on)
+		fprintf(stream,"  disto/nbpix");
+	fprintf(stream, "\n");
+
+	for (tileno = 0; tileno < cstr_info->tw * cstr_info->th; tileno++) {
+		fprintf(stream, "%4d %9d %9d %9d %9d", 
+			cstr_info->tile[tileno].tileno,
+			cstr_info->tile[tileno].start_pos,
+			cstr_info->tile[tileno].end_header,
+			cstr_info->tile[tileno].end_pos,
+			cstr_info->tile[tileno].num_tps);
+		if (disto_on)
+			fprintf(stream," %9e", cstr_info->tile[tileno].distotile);
+		if (numpix_on)
+			fprintf(stream," %9d", cstr_info->tile[tileno].numpix);
+		if (disto_on && numpix_on)
+			fprintf(stream," %9e", cstr_info->tile[tileno].distotile / cstr_info->tile[tileno].numpix);
+		fprintf(stream, "\n");
+	}
+		
+	for (tileno = 0; tileno < cstr_info->tw * cstr_info->th; tileno++) {
+		OPJ_OFF_T start_pos, end_ph_pos, end_pos;
+		double disto = 0;
+		int max_numdecompos = 0;
+		pack_nb = 0;
+
+		for (compno = 0; compno < cstr_info->numcomps; compno++) {
+			if (max_numdecompos < cstr_info->numdecompos[compno])
+				max_numdecompos = cstr_info->numdecompos[compno];
+		}	
+
+		fprintf(stream, "\nTILE %d DETAILS\n", tileno);	
+		fprintf(stream, "part_nb tileno  start_pack num_packs  start_pos end_tph_pos   end_pos\n");
+		for (tilepartno = 0; tilepartno < cstr_info->tile[tileno].num_tps; tilepartno++)
+			fprintf(stream, "%4d %9d   %9d %9d  %9d %11d %9d\n",
+				tilepartno, tileno,
+				cstr_info->tile[tileno].tp[tilepartno].tp_start_pack,
+				cstr_info->tile[tileno].tp[tilepartno].tp_numpacks,
+				cstr_info->tile[tileno].tp[tilepartno].tp_start_pos,
+				cstr_info->tile[tileno].tp[tilepartno].tp_end_header,
+				cstr_info->tile[tileno].tp[tilepartno].tp_end_pos
+				);
+
+		if (cstr_info->prog == OPJ_LRCP) {	/* LRCP */
+			fprintf(stream, "LRCP\npack_nb tileno layno resno compno precno start_pos end_ph_pos end_pos");
+			if (disto_on)
+				fprintf(stream, " disto");
+			fprintf(stream,"\n");
+
+			for (layno = 0; layno < cstr_info->numlayers; layno++) {
+				for (resno = 0; resno < max_numdecompos + 1; resno++) {
+					for (compno = 0; compno < cstr_info->numcomps; compno++) {
+						int prec_max;
+						if (resno > cstr_info->numdecompos[compno])
+							break;
+						prec_max = cstr_info->tile[tileno].pw[resno] * cstr_info->tile[tileno].ph[resno];
+						for (precno = 0; precno < prec_max; precno++) {
+							start_pos = cstr_info->tile[tileno].packet[pack_nb].start_pos;
+							end_ph_pos = cstr_info->tile[tileno].packet[pack_nb].end_ph_pos;
+							end_pos = cstr_info->tile[tileno].packet[pack_nb].end_pos;
+							disto = cstr_info->tile[tileno].packet[pack_nb].disto;
+							fprintf(stream, "%4d %6d %7d %5d %6d  %6d    %6" PRId64 "     %6" PRId64 " %7" PRId64,
+								pack_nb, tileno, layno, resno, compno, precno, start_pos, end_ph_pos, end_pos);
+							if (disto_on)
+								fprintf(stream, " %8e", disto);
+							fprintf(stream, "\n");
+							total_disto += disto;
+							pack_nb++;
+						}
+					}
+				}
+			}
+		} /* LRCP */
+
+		else if (cstr_info->prog == OPJ_RLCP) {	/* RLCP */			
+			fprintf(stream, "RLCP\npack_nb tileno resno layno compno precno start_pos end_ph_pos end_pos\n");
+			if (disto_on)
+				fprintf(stream, " disto");
+			fprintf(stream,"\n");
+
+			for (resno = 0; resno < max_numdecompos + 1; resno++) {
+				for (layno = 0; layno < cstr_info->numlayers; layno++) {
+					for (compno = 0; compno < cstr_info->numcomps; compno++) {
+						int prec_max; 
+						if (resno > cstr_info->numdecompos[compno])
+							break;
+						prec_max = cstr_info->tile[tileno].pw[resno] * cstr_info->tile[tileno].ph[resno];
+						for (precno = 0; precno < prec_max; precno++) {
+							start_pos = cstr_info->tile[tileno].packet[pack_nb].start_pos;
+							end_ph_pos = cstr_info->tile[tileno].packet[pack_nb].end_ph_pos;
+							end_pos = cstr_info->tile[tileno].packet[pack_nb].end_pos;
+							disto = cstr_info->tile[tileno].packet[pack_nb].disto;
+							fprintf(stream, "%4d %6d %5d %7d %6d %6d %9" PRId64 "   %9" PRId64 " %7" PRId64,
+								pack_nb, tileno, resno, layno, compno, precno, start_pos, end_ph_pos, end_pos);
+							if (disto_on)
+								fprintf(stream, " %8e", disto);
+							fprintf(stream, "\n");
+							total_disto += disto;
+							pack_nb++;
+						}
+					}
+				}
+			}
+		} /* RLCP */
+
+		else if (cstr_info->prog == OPJ_RPCL) {	/* RPCL */
+
+			fprintf(stream, "RPCL\npack_nb tileno resno precno compno layno start_pos end_ph_pos end_pos"); 
+			if (disto_on)
+				fprintf(stream, " disto");
+			fprintf(stream,"\n");
+
+			for (resno = 0; resno < max_numdecompos + 1; resno++) {
+				int numprec = cstr_info->tile[tileno].pw[resno] * cstr_info->tile[tileno].ph[resno];
+				for (precno = 0; precno < numprec; precno++) {								
+					/* I suppose components have same XRsiz, YRsiz */
+					int x0 = cstr_info->tile_Ox + tileno - (int)floor((float)tileno/(float)cstr_info->tw ) * cstr_info->tw * cstr_info->tile_x;
+					int y0 = cstr_info->tile_Ox + (int)floor( (float)tileno/(float)cstr_info->tw ) * cstr_info->tile_y;
+					int x1 = x0 + cstr_info->tile_x;
+					int y1 = y0 + cstr_info->tile_y;
+					for (compno = 0; compno < cstr_info->numcomps; compno++) {					
+						int pcnx = cstr_info->tile[tileno].pw[resno];
+						int pcx = (int) pow( 2, cstr_info->tile[tileno].pdx[resno] + cstr_info->numdecompos[compno] - resno );
+						int pcy = (int) pow( 2, cstr_info->tile[tileno].pdy[resno] + cstr_info->numdecompos[compno] - resno );
+						int precno_x = precno - (int) floor( (float)precno/(float)pcnx ) * pcnx;
+						int precno_y = (int) floor( (float)precno/(float)pcnx );
+						if (resno > cstr_info->numdecompos[compno])
+							break;
+						for(y = y0; y < y1; y++) {							
+							if (precno_y*pcy == y ) {
+								for (x = x0; x < x1; x++) {									
+									if (precno_x*pcx == x ) {
+										for (layno = 0; layno < cstr_info->numlayers; layno++) {
+											start_pos = cstr_info->tile[tileno].packet[pack_nb].start_pos;
+											end_ph_pos = cstr_info->tile[tileno].packet[pack_nb].end_ph_pos;
+											end_pos = cstr_info->tile[tileno].packet[pack_nb].end_pos;
+											disto = cstr_info->tile[tileno].packet[pack_nb].disto;
+											fprintf(stream, "%4d %6d %5d %6d %6d %7d %9" PRId64 "   %9" PRId64 " %7" PRId64,
+												pack_nb, tileno, resno, precno, compno, layno, start_pos, end_ph_pos, end_pos); 
+											if (disto_on)
+												fprintf(stream, " %8e", disto);
+											fprintf(stream, "\n");
+											total_disto += disto;
+											pack_nb++; 
+										}
+									}
+								}/* x = x0..x1 */
+							} 
+						}  /* y = y0..y1 */
+					} /* precno */
+				} /* compno */
+			} /* resno */
+		} /* RPCL */
+
+		else if (cstr_info->prog == OPJ_PCRL) {	/* PCRL */
+			/* I suppose components have same XRsiz, YRsiz */
+			int x0 = cstr_info->tile_Ox + tileno - (int)floor( (float)tileno/(float)cstr_info->tw ) * cstr_info->tw * cstr_info->tile_x;
+			int y0 = cstr_info->tile_Ox + (int)floor( (float)tileno/(float)cstr_info->tw ) * cstr_info->tile_y;
+			int x1 = x0 + cstr_info->tile_x;
+			int y1 = y0 + cstr_info->tile_y;
+
+			/* Count the maximum number of precincts */
+			int max_numprec = 0;
+			for (resno = 0; resno < max_numdecompos + 1; resno++) {
+				int numprec = cstr_info->tile[tileno].pw[resno] * cstr_info->tile[tileno].ph[resno];
+				if (numprec > max_numprec)
+					max_numprec = numprec;
+			}
+
+			fprintf(stream, "PCRL\npack_nb tileno precno compno resno layno start_pos end_ph_pos end_pos"); 
+			if (disto_on)
+				fprintf(stream, " disto");
+			fprintf(stream,"\n");
+
+			for (precno = 0; precno < max_numprec; precno++) {
+				for (compno = 0; compno < cstr_info->numcomps; compno++) {
+					for (resno = 0; resno < cstr_info->numdecompos[compno] + 1; resno++) {
+						int numprec = cstr_info->tile[tileno].pw[resno] * cstr_info->tile[tileno].ph[resno];
+						int pcnx = cstr_info->tile[tileno].pw[resno];
+						int pcx = (int) pow( 2, cstr_info->tile[tileno].pdx[resno] + cstr_info->numdecompos[compno] - resno );
+						int pcy = (int) pow( 2, cstr_info->tile[tileno].pdy[resno] + cstr_info->numdecompos[compno] - resno );
+						int precno_x = precno - (int) floor( (float)precno/(float)pcnx ) * pcnx;
+						int precno_y = (int) floor( (float)precno/(float)pcnx );
+						if (precno >= numprec)
+							continue;
+						for(y = y0; y < y1; y++) {							
+							if (precno_y*pcy == y ) {
+								for (x = x0; x < x1; x++) {									
+									if (precno_x*pcx == x ) {
+										for (layno = 0; layno < cstr_info->numlayers; layno++) {
+											start_pos = cstr_info->tile[tileno].packet[pack_nb].start_pos;
+											end_ph_pos = cstr_info->tile[tileno].packet[pack_nb].end_ph_pos;
+											end_pos = cstr_info->tile[tileno].packet[pack_nb].end_pos;
+											disto = cstr_info->tile[tileno].packet[pack_nb].disto;
+											fprintf(stream, "%4d %6d %6d %6d %5d %7d %9" PRId64 "   %9" PRId64 " %7" PRId64,
+												pack_nb, tileno, precno, compno, resno, layno, start_pos, end_ph_pos, end_pos); 
+											if (disto_on)
+												fprintf(stream, " %8e", disto);
+											fprintf(stream, "\n");
+											total_disto += disto;
+											pack_nb++; 
+										}
+									}
+								}/* x = x0..x1 */
+							} 
+						}  /* y = y0..y1 */
+					} /* resno */
+				} /* compno */
+			} /* precno */
+		} /* PCRL */
+
+		else {	/* CPRL */
+			/* Count the maximum number of precincts */
+			int max_numprec = 0;
+			for (resno = 0; resno < max_numdecompos + 1; resno++) {
+				int numprec = cstr_info->tile[tileno].pw[resno] * cstr_info->tile[tileno].ph[resno];
+				if (numprec > max_numprec)
+					max_numprec = numprec;
+			}
+
+			fprintf(stream, "CPRL\npack_nb tileno compno precno resno layno start_pos end_ph_pos end_pos"); 
+			if (disto_on)
+				fprintf(stream, " disto");
+			fprintf(stream,"\n");
+
+			for (compno = 0; compno < cstr_info->numcomps; compno++) {
+				/* I suppose components have same XRsiz, YRsiz */
+				int x0 = cstr_info->tile_Ox + tileno - (int)floor( (float)tileno/(float)cstr_info->tw ) * cstr_info->tw * cstr_info->tile_x;
+				int y0 = cstr_info->tile_Ox + (int)floor( (float)tileno/(float)cstr_info->tw ) * cstr_info->tile_y;
+				int x1 = x0 + cstr_info->tile_x;
+				int y1 = y0 + cstr_info->tile_y;
+
+				for (precno = 0; precno < max_numprec; precno++) {
+					for (resno = 0; resno < cstr_info->numdecompos[compno] + 1; resno++) {
+						int numprec = cstr_info->tile[tileno].pw[resno] * cstr_info->tile[tileno].ph[resno];
+						int pcnx = cstr_info->tile[tileno].pw[resno];
+						int pcx = (int) pow( 2, cstr_info->tile[tileno].pdx[resno] + cstr_info->numdecompos[compno] - resno );
+						int pcy = (int) pow( 2, cstr_info->tile[tileno].pdy[resno] + cstr_info->numdecompos[compno] - resno );
+						int precno_x = precno - (int) floor( (float)precno/(float)pcnx ) * pcnx;
+						int precno_y = (int) floor( (float)precno/(float)pcnx );
+						if (precno >= numprec)
+							continue;
+
+						for(y = y0; y < y1; y++) {
+							if (precno_y*pcy == y ) {
+								for (x = x0; x < x1; x++) {
+									if (precno_x*pcx == x ) {
+										for (layno = 0; layno < cstr_info->numlayers; layno++) {
+											start_pos = cstr_info->tile[tileno].packet[pack_nb].start_pos;
+											end_ph_pos = cstr_info->tile[tileno].packet[pack_nb].end_ph_pos;
+											end_pos = cstr_info->tile[tileno].packet[pack_nb].end_pos;
+											disto = cstr_info->tile[tileno].packet[pack_nb].disto;
+											fprintf(stream, "%4d %6d %6d %6d %5d %7d %9" PRId64 "   %9" PRId64 " %7" PRId64,
+												pack_nb, tileno, compno, precno, resno, layno, start_pos, end_ph_pos, end_pos); 
+											if (disto_on)
+												fprintf(stream, " %8e", disto);
+											fprintf(stream, "\n");
+											total_disto += disto;
+											pack_nb++; 
+										}
+									}
+								}/* x = x0..x1 */
+							}
+						} /* y = y0..y1 */
+					} /* resno */
+				} /* precno */
+			} /* compno */
+		} /* CPRL */   
+	} /* tileno */
+	
+	if (disto_on) {
+		fprintf(stream, "%8e\n", cstr_info->D_max); /* SE max */	
+		fprintf(stream, "%.8e\n", total_disto);	/* SE totale */
+	}
+/* UniPG>> */
+	/* print the markers' list */
+	if (cstr_info->marknum) {
+		fprintf(stream, "\nMARKER LIST\n");
+		fprintf(stream, "%d\n", cstr_info->marknum);
+		fprintf(stream, "type\tstart_pos    length\n");
+		for (x = 0; x < cstr_info->marknum; x++)
+			fprintf(stream, "%X\t%9" PRId64 " %9d\n", cstr_info->marker[x].type, cstr_info->marker[x].pos, cstr_info->marker[x].len);
+	}
+/* <<UniPG */
+	fclose(stream);
+
+	fprintf(stderr,"Generated index file %s\n", index);
+
+	return 0;
+}

src/bin/jp2/index.h

@@ -0,0 +1,54 @@
+/*
+ * The copyright in this software is being made available under the 2-clauses 
+ * BSD License, included below. This software may be subject to other third 
+ * party and contributor rights, including patent rights, and no such rights
+ * are granted under this license.
+ *
+ * Copyright (c) 2002-2014, Universite catholique de Louvain (UCL), Belgium
+ * Copyright (c) 2002-2014, Professor Benoit Macq
+ * Copyright (c) 2003-2007, Francois-Olivier Devaux
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions
+ * are met:
+ * 1. Redistributions of source code must retain the above copyright
+ *    notice, this list of conditions and the following disclaimer.
+ * 2. Redistributions in binary form must reproduce the above copyright
+ *    notice, this list of conditions and the following disclaimer in the
+ *    documentation and/or other materials provided with the distribution.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS `AS IS'
+ * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED.  IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
+ * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+ * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+ * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+ * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+ * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+ * POSSIBILITY OF SUCH DAMAGE.
+ */
+
+#ifndef __J2K_INDEX_H
+#define __J2K_INDEX_H
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/**
+Write a structured index to a file
+@param cstr_info Codestream information 
+@param index Index filename
+@return Returns 0 if successful, returns 1 otherwise
+*/
+int write_index_file(opj_codestream_info_t *cstr_info, char *index);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif /* __J2K_INDEX_H */
+

src/bin/jp2/opj_decompress.c

@@ -0,0 +1,983 @@
+/*
+ * The copyright in this software is being made available under the 2-clauses 
+ * BSD License, included below. This software may be subject to other third 
+ * party and contributor rights, including patent rights, and no such rights
+ * are granted under this license.
+ *
+ * Copyright (c) 2002-2014, Universite catholique de Louvain (UCL), Belgium
+ * Copyright (c) 2002-2014, Professor Benoit Macq
+ * Copyright (c) 2001-2003, David Janssens
+ * Copyright (c) 2002-2003, Yannick Verschueren
+ * Copyright (c) 2003-2007, Francois-Olivier Devaux 
+ * Copyright (c) 2003-2014, Antonin Descampe
+ * Copyright (c) 2005, Herve Drolon, FreeImage Team
+ * Copyright (c) 2006-2007, Parvatha Elangovan
+ * Copyright (c) 2008, 2011-2012, Centre National d'Etudes Spatiales (CNES), FR 
+ * Copyright (c) 2012, CS Systemes d'Information, France
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions
+ * are met:
+ * 1. Redistributions of source code must retain the above copyright
+ *    notice, this list of conditions and the following disclaimer.
+ * 2. Redistributions in binary form must reproduce the above copyright
+ *    notice, this list of conditions and the following disclaimer in the
+ *    documentation and/or other materials provided with the distribution.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS `AS IS'
+ * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED.  IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
+ * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+ * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+ * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+ * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+ * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+ * POSSIBILITY OF SUCH DAMAGE.
+ */
+#include "opj_apps_config.h"
+
+#include <stdio.h>
+#include <string.h>
+#include <stdlib.h>
+#include <math.h>
+
+#ifdef _WIN32
+#include "windirent.h"
+#else
+#include <dirent.h>
+#endif /* _WIN32 */
+
+#ifdef _WIN32
+#include <windows.h>
+#define strcasecmp _stricmp
+#define strncasecmp _strnicmp
+#else
+#include <strings.h>
+#endif /* _WIN32 */
+
+#include "openjpeg.h"
+#include "opj_getopt.h"
+#include "convert.h"
+#include "index.h"
+
+#ifdef OPJ_HAVE_LIBLCMS2
+#include <lcms2.h>
+#endif
+#ifdef OPJ_HAVE_LIBLCMS1
+#include <lcms.h>
+#endif
+#include "color.h"
+
+#include "format_defs.h"
+
+typedef struct dircnt{
+	/** Buffer for holding images read from Directory*/
+	char *filename_buf;
+	/** Pointer to the buffer*/
+	char **filename;
+}dircnt_t;
+
+
+typedef struct img_folder{
+	/** The directory path of the folder containing input images*/
+	char *imgdirpath;
+	/** Output format*/
+	const char *out_format;
+	/** Enable option*/
+	char set_imgdir;
+	/** Enable Cod Format for output*/
+	char set_out_format;
+
+}img_fol_t;
+
+/* -------------------------------------------------------------------------- */
+/* Declarations                                                               */
+int get_num_images(char *imgdirpath);
+int load_images(dircnt_t *dirptr, char *imgdirpath);
+int get_file_format(const char *filename);
+char get_next_file(int imageno,dircnt_t *dirptr,img_fol_t *img_fol, opj_dparameters_t *parameters);
+static int infile_format(const char *fname);
+
+int parse_cmdline_decoder(int argc, char **argv, opj_dparameters_t *parameters,img_fol_t *img_fol, char *indexfilename);
+int parse_DA_values( char* inArg, unsigned int *DA_x0, unsigned int *DA_y0, unsigned int *DA_x1, unsigned int *DA_y1);
+
+/* -------------------------------------------------------------------------- */
+static void decode_help_display(void) {
+    fprintf(stdout,"\nThis is the opj_decompress utility from the OpenJPEG project.\n"
+            "It decompresses JPEG 2000 codestreams to various image formats.\n"
+            "It has been compiled against openjp2 library v%s.\n\n",opj_version());
+
+    fprintf(stdout,"Parameters:\n");
+    fprintf(stdout,"-----------\n");
+	fprintf(stdout,"\n");
+    fprintf(stdout,"  -ImgDir <directory> \n");
+	fprintf(stdout,"	Image file Directory path \n");
+    fprintf(stdout,"  -OutFor <PBM|PGM|PPM|PNM|PAM|PGX|PNG|BMP|TIF|RAW|RAWL|TGA>\n");
+	fprintf(stdout,"    REQUIRED only if -ImgDir is used\n");
+    fprintf(stdout,"	Output format for decompressed images.\n");
+	fprintf(stdout,"  -i <compressed file>\n");
+    fprintf(stdout,"    REQUIRED only if an Input image directory is not specified\n");
+	fprintf(stdout,"    Currently accepts J2K-files, JP2-files and JPT-files. The file type\n");
+	fprintf(stdout,"    is identified based on its suffix.\n");
+	fprintf(stdout,"  -o <decompressed file>\n");
+	fprintf(stdout,"    REQUIRED\n");
+    fprintf(stdout,"    Currently accepts formats specified above (see OutFor option)\n");
+	fprintf(stdout,"    Binary data is written to the file (not ascii). If a PGX\n");
+	fprintf(stdout,"    filename is given, there will be as many output files as there are\n");
+	fprintf(stdout,"    components: an indice starting from 0 will then be appended to the\n");
+	fprintf(stdout,"    output filename, just before the \"pgx\" extension. If a PGM filename\n");
+	fprintf(stdout,"    is given and there are more than one component, only the first component\n");
+	fprintf(stdout,"    will be written to the file.\n");
+	fprintf(stdout,"  -r <reduce factor>\n");
+	fprintf(stdout,"    Set the number of highest resolution levels to be discarded. The\n");
+	fprintf(stdout,"    image resolution is effectively divided by 2 to the power of the\n");
+	fprintf(stdout,"    number of discarded levels. The reduce factor is limited by the\n");
+	fprintf(stdout,"    smallest total number of decomposition levels among tiles.\n");
+	fprintf(stdout,"  -l <number of quality layers to decode>\n");
+	fprintf(stdout,"    Set the maximum number of quality layers to decode. If there are\n");
+	fprintf(stdout,"    less quality layers than the specified number, all the quality layers\n");
+	fprintf(stdout,"    are decoded.\n");
+	fprintf(stdout,"  -x  \n"); 
+	fprintf(stdout,"    Create an index file *.Idx (-x index_name.Idx) \n");
+	fprintf(stdout,"  -d <x0,y0,x1,y1>\n");
+	fprintf(stdout,"    OPTIONAL\n");
+	fprintf(stdout,"    Decoding area\n");
+	fprintf(stdout,"    By default all the image is decoded.\n");
+	fprintf(stdout,"  -t <tile_number>\n");
+	fprintf(stdout,"    OPTIONAL\n");
+	fprintf(stdout,"    Set the tile number of the decoded tile. Follow the JPEG2000 convention from left-up to bottom-up\n");
+	fprintf(stdout,"    By default all tiles are decoded.\n");
+	fprintf(stdout,"\n");
+/* UniPG>> */
+#ifdef USE_JPWL
+	fprintf(stdout,"  -W <options>\n");
+	fprintf(stdout,"    Activates the JPWL correction capability, if the codestream complies.\n");
+	fprintf(stdout,"    Options can be a comma separated list of <param=val> tokens:\n");
+	fprintf(stdout,"    c, c=numcomps\n");
+	fprintf(stdout,"       numcomps is the number of expected components in the codestream\n");
+	fprintf(stdout,"       (search of first EPB rely upon this, default is %d)\n", JPWL_EXPECTED_COMPONENTS);
+#endif /* USE_JPWL */
+/* <<UniPG */
+	fprintf(stdout,"\n");
+}
+
+/* -------------------------------------------------------------------------- */
+
+int get_num_images(char *imgdirpath){
+	DIR *dir;
+	struct dirent* content;	
+	int num_images = 0;
+
+	/*Reading the input images from given input directory*/
+
+	dir= opendir(imgdirpath);
+	if(!dir){
+		fprintf(stderr,"Could not open Folder %s\n",imgdirpath);
+		return 0;
+	}
+	
+	while((content=readdir(dir))!=NULL){
+		if(strcmp(".",content->d_name)==0 || strcmp("..",content->d_name)==0 )
+			continue;
+		num_images++;
+	}
+	return num_images;
+}
+
+/* -------------------------------------------------------------------------- */
+int load_images(dircnt_t *dirptr, char *imgdirpath){
+	DIR *dir;
+	struct dirent* content;	
+	int i = 0;
+
+	/*Reading the input images from given input directory*/
+
+	dir= opendir(imgdirpath);
+	if(!dir){
+		fprintf(stderr,"Could not open Folder %s\n",imgdirpath);
+		return 1;
+	}else	{
+		fprintf(stderr,"Folder opened successfully\n");
+	}
+	
+	while((content=readdir(dir))!=NULL){
+		if(strcmp(".",content->d_name)==0 || strcmp("..",content->d_name)==0 )
+			continue;
+
+		strcpy(dirptr->filename[i],content->d_name);
+		i++;
+	}
+	return 0;	
+}
+
+/* -------------------------------------------------------------------------- */
+int get_file_format(const char *filename) {
+	unsigned int i;
+	static const char *extension[] = {"pgx", "pnm", "pgm", "ppm", "bmp","tif", "raw", "rawl", "tga", "png", "j2k", "jp2", "jpt", "j2c", "jpc" };
+	static const int format[] = { PGX_DFMT, PXM_DFMT, PXM_DFMT, PXM_DFMT, BMP_DFMT, TIF_DFMT, RAW_DFMT, RAWL_DFMT, TGA_DFMT, PNG_DFMT, J2K_CFMT, JP2_CFMT, JPT_CFMT, J2K_CFMT, J2K_CFMT };
+	char * ext = strrchr(filename, '.');
+	if (ext == NULL)
+		return -1;
+	ext++;
+	if(*ext) {
+		for(i = 0; i < sizeof(format)/sizeof(*format); i++) {
+			if(strcasecmp(ext, extension[i]) == 0) {
+				return format[i];
+			}
+		}
+	}
+
+	return -1;
+}
+
+/* -------------------------------------------------------------------------- */
+char get_next_file(int imageno,dircnt_t *dirptr,img_fol_t *img_fol, opj_dparameters_t *parameters){
+	char image_filename[OPJ_PATH_LEN], infilename[OPJ_PATH_LEN],outfilename[OPJ_PATH_LEN],temp_ofname[OPJ_PATH_LEN];
+	char *temp_p, temp1[OPJ_PATH_LEN]="";
+
+	strcpy(image_filename,dirptr->filename[imageno]);
+	fprintf(stderr,"File Number %d \"%s\"\n",imageno,image_filename);
+	parameters->decod_format = infile_format(image_filename);
+	if (parameters->decod_format == -1)
+		return 1;
+	sprintf(infilename,"%s/%s",img_fol->imgdirpath,image_filename);
+	strncpy(parameters->infile, infilename, sizeof(infilename));
+
+	/*Set output file*/
+	strcpy(temp_ofname,strtok(image_filename,"."));
+	while((temp_p = strtok(NULL,".")) != NULL){
+		strcat(temp_ofname,temp1);
+		sprintf(temp1,".%s",temp_p);
+	}
+	if(img_fol->set_out_format==1){
+		sprintf(outfilename,"%s/%s.%s",img_fol->imgdirpath,temp_ofname,img_fol->out_format);
+		strncpy(parameters->outfile, outfilename, sizeof(outfilename));
+	}
+	return 0;
+}
+
+/* -------------------------------------------------------------------------- */
+#define JP2_RFC3745_MAGIC "\x00\x00\x00\x0c\x6a\x50\x20\x20\x0d\x0a\x87\x0a"
+#define JP2_MAGIC "\x0d\x0a\x87\x0a"
+/* position 45: "\xff\x52" */
+#define J2K_CODESTREAM_MAGIC "\xff\x4f\xff\x51"
+
+static int infile_format(const char *fname)
+{
+	FILE *reader;
+	const char *s, *magic_s;
+	int ext_format, magic_format;
+	unsigned char buf[12];
+	OPJ_SIZE_T l_nb_read;
+
+	reader = fopen(fname, "rb");
+
+	if (reader == NULL)
+		return -2;
+
+	memset(buf, 0, 12);
+	l_nb_read = fread(buf, 1, 12, reader);
+	fclose(reader);
+	if (l_nb_read != 12)
+		return -1;
+
+
+
+	ext_format = get_file_format(fname);
+
+	if (ext_format == JPT_CFMT)
+		return JPT_CFMT;
+
+	if (memcmp(buf, JP2_RFC3745_MAGIC, 12) == 0 || memcmp(buf, JP2_MAGIC, 4) == 0) {
+		magic_format = JP2_CFMT;
+		magic_s = ".jp2";
+	}
+	else if (memcmp(buf, J2K_CODESTREAM_MAGIC, 4) == 0) {
+		magic_format = J2K_CFMT;
+		magic_s = ".j2k or .jpc or .j2c";
+	}
+	else
+		return -1;
+
+	if (magic_format == ext_format)
+		return ext_format;
+
+	s = fname + strlen(fname) - 4;
+
+	fputs("\n===========================================\n", stderr);
+	fprintf(stderr, "The extension of this file is incorrect.\n"
+					"FOUND %s. SHOULD BE %s\n", s, magic_s);
+	fputs("===========================================\n", stderr);
+
+	return magic_format;
+}
+
+/* -------------------------------------------------------------------------- */
+/**
+ * Parse the command line
+ */
+/* -------------------------------------------------------------------------- */
+int parse_cmdline_decoder(int argc, char **argv, opj_dparameters_t *parameters,img_fol_t *img_fol, char *indexfilename) {
+	/* parse the command line */
+	int totlen, c;
+	opj_option_t long_option[]={
+		{"ImgDir",REQ_ARG, NULL ,'y'},
+        {"OutFor",REQ_ARG, NULL ,'O'}
+	};
+
+	const char optlist[] = "i:o:r:l:x:d:t:"
+
+/* UniPG>> */
+#ifdef USE_JPWL
+					"W:"
+#endif /* USE_JPWL */
+/* <<UniPG */
+            "h"		;
+	totlen=sizeof(long_option);
+	img_fol->set_out_format = 0;
+	do {
+		c = opj_getopt_long(argc, argv,optlist,long_option,totlen);
+		if (c == -1)
+			break;
+		switch (c) {
+			case 'i':			/* input file */
+			{
+				char *infile = opj_optarg;
+				parameters->decod_format = infile_format(infile);
+				switch(parameters->decod_format) {
+					case J2K_CFMT:
+						break;
+					case JP2_CFMT:
+						break;
+					case JPT_CFMT:
+						break;
+                                        case -2:
+						fprintf(stderr, 
+							"!! infile cannot be read: %s !!\n\n", 
+							infile);
+						return 1;
+					default:
+						fprintf(stderr, 
+                            "[ERROR] Unknown input file format: %s \n"
+                            "        Known file formats are *.j2k, *.jp2, *.jpc or *.jpt\n",
+							infile);
+						return 1;
+				}
+				strncpy(parameters->infile, infile, sizeof(parameters->infile)-1);
+			}
+			break;
+				
+				/* ----------------------------------------------------- */
+
+			case 'o':			/* output file */
+			{
+				char *outfile = opj_optarg;
+				parameters->cod_format = get_file_format(outfile);
+				switch(parameters->cod_format) {
+					case PGX_DFMT:
+						break;
+					case PXM_DFMT:
+						break;
+					case BMP_DFMT:
+						break;
+					case TIF_DFMT:
+						break;
+					case RAW_DFMT:
+						break;
+					case RAWL_DFMT:
+						break;
+					case TGA_DFMT:
+						break;
+					case PNG_DFMT:
+						break;
+					default:
+						fprintf(stderr, "Unknown output format image %s [only *.pnm, *.pgm, *.ppm, *.pgx, *.bmp, *.tif, *.raw or *.tga]!! \n", outfile);
+						return 1;
+				}
+				strncpy(parameters->outfile, outfile, sizeof(parameters->outfile)-1);
+			}
+			break;
+			
+				/* ----------------------------------------------------- */
+
+			case 'O':			/* output format */
+			{
+				char outformat[50];
+				char *of = opj_optarg;
+				sprintf(outformat,".%s",of);
+				img_fol->set_out_format = 1;
+				parameters->cod_format = get_file_format(outformat);
+				switch(parameters->cod_format) {
+					case PGX_DFMT:
+						img_fol->out_format = "pgx";
+						break;
+					case PXM_DFMT:
+						img_fol->out_format = "ppm";
+						break;
+					case BMP_DFMT:
+						img_fol->out_format = "bmp";
+						break;
+					case TIF_DFMT:
+						img_fol->out_format = "tif";
+						break;
+					case RAW_DFMT:
+						img_fol->out_format = "raw";
+						break;
+					case RAWL_DFMT:
+						img_fol->out_format = "rawl";
+						break;
+					case TGA_DFMT:
+						img_fol->out_format = "raw";
+						break;
+					case PNG_DFMT:
+						img_fol->out_format = "png";
+						break;
+					default:
+						fprintf(stderr, "Unknown output format image %s [only *.pnm, *.pgm, *.ppm, *.pgx, *.bmp, *.tif, *.raw or *.tga]!! \n", outformat);
+						return 1;
+						break;
+				}
+			}
+			break;
+
+				/* ----------------------------------------------------- */
+
+
+			case 'r':		/* reduce option */
+			{
+				sscanf(opj_optarg, "%ud", &parameters->cp_reduce);
+			}
+			break;
+			
+				/* ----------------------------------------------------- */
+      
+
+			case 'l':		/* layering option */
+			{
+				sscanf(opj_optarg, "%ud", &parameters->cp_layer);
+			}
+			break;
+			
+				/* ----------------------------------------------------- */
+
+			case 'h': 			/* display an help description */
+				decode_help_display();
+				return 1;				
+
+            /* ----------------------------------------------------- */
+
+			case 'y':			/* Image Directory path */
+                {
+					img_fol->imgdirpath = (char*)malloc(strlen(opj_optarg) + 1);
+					strcpy(img_fol->imgdirpath,opj_optarg);
+					img_fol->set_imgdir=1;
+				}
+				break;
+
+				/* ----------------------------------------------------- */
+
+			case 'd':     		/* Input decode ROI */
+			{
+				int size_optarg = (int)strlen(opj_optarg) + 1;
+				char *ROI_values = (char*) malloc((size_t)size_optarg);
+				ROI_values[0] = '\0';
+				strncpy(ROI_values, opj_optarg, strlen(opj_optarg));
+				ROI_values[strlen(opj_optarg)] = '\0';
+				/*printf("ROI_values = %s [%d / %d]\n", ROI_values, strlen(ROI_values), size_optarg ); */
+				parse_DA_values( ROI_values, &parameters->DA_x0, &parameters->DA_y0, &parameters->DA_x1, &parameters->DA_y1);
+
+				free(ROI_values);
+			}
+			break;
+
+			/* ----------------------------------------------------- */
+
+			case 't':     		/* Input tile index */
+			{
+				sscanf(opj_optarg, "%ud", &parameters->tile_index);
+				parameters->nb_tile_to_decode = 1;
+			}
+			break;
+
+				/* ----------------------------------------------------- */								
+
+			case 'x':			/* Creation of index file */
+				{
+					char *index = opj_optarg;
+					strncpy(indexfilename, index, OPJ_PATH_LEN);
+				}
+				break;
+				/* ----------------------------------------------------- */
+				/* UniPG>> */
+#ifdef USE_JPWL
+			
+			case 'W': 			/* activate JPWL correction */
+			{
+				char *token = NULL;
+
+				token = strtok(opj_optarg, ",");
+				while(token != NULL) {
+
+					/* search expected number of components */
+					if (*token == 'c') {
+
+						static int compno;
+
+						compno = JPWL_EXPECTED_COMPONENTS; /* predefined no. of components */
+
+						if(sscanf(token, "c=%d", &compno) == 1) {
+							/* Specified */
+							if ((compno < 1) || (compno > 256)) {
+								fprintf(stderr, "ERROR -> invalid number of components c = %d\n", compno);
+								return 1;
+							}
+							parameters->jpwl_exp_comps = compno;
+
+						} else if (!strcmp(token, "c")) {
+							/* default */
+							parameters->jpwl_exp_comps = compno; /* auto for default size */
+
+						} else {
+							fprintf(stderr, "ERROR -> invalid components specified = %s\n", token);
+							return 1;
+						};
+					}
+
+					/* search maximum number of tiles */
+					if (*token == 't') {
+
+						static int tileno;
+
+						tileno = JPWL_MAXIMUM_TILES; /* maximum no. of tiles */
+
+						if(sscanf(token, "t=%d", &tileno) == 1) {
+							/* Specified */
+							if ((tileno < 1) || (tileno > JPWL_MAXIMUM_TILES)) {
+								fprintf(stderr, "ERROR -> invalid number of tiles t = %d\n", tileno);
+								return 1;
+							}
+							parameters->jpwl_max_tiles = tileno;
+
+						} else if (!strcmp(token, "t")) {
+							/* default */
+							parameters->jpwl_max_tiles = tileno; /* auto for default size */
+
+						} else {
+							fprintf(stderr, "ERROR -> invalid tiles specified = %s\n", token);
+							return 1;
+						};
+					}
+
+					/* next token or bust */
+					token = strtok(NULL, ",");
+				};
+				parameters->jpwl_correct = OPJ_TRUE;
+				fprintf(stdout, "JPWL correction capability activated\n");
+				fprintf(stdout, "- expecting %d components\n", parameters->jpwl_exp_comps);
+			}
+			break;	
+#endif /* USE_JPWL */
+/* <<UniPG */            
+
+				/* ----------------------------------------------------- */
+			
+        default:
+            fprintf(stderr, "[WARNING] An invalid option has been ignored.\n");
+            break;
+		}
+	}while(c != -1);
+
+	/* check for possible errors */
+	if(img_fol->set_imgdir==1){
+		if(!(parameters->infile[0]==0)){
+            fprintf(stderr, "[ERROR] options -ImgDir and -i cannot be used together.\n");
+			return 1;
+		}
+		if(img_fol->set_out_format == 0){
+            fprintf(stderr, "[ERROR] When -ImgDir is used, -OutFor <FORMAT> must be used.\n");
+            fprintf(stderr, "Only one format allowed.\n"
+                            "Valid format are PGM, PPM, PNM, PGX, BMP, TIF, RAW and TGA.\n");
+			return 1;
+		}
+		if(!((parameters->outfile[0] == 0))){
+            fprintf(stderr, "[ERROR] options -ImgDir and -o cannot be used together.\n");
+			return 1;
+		}
+	}else{
+		if((parameters->infile[0] == 0) || (parameters->outfile[0] == 0)) {
+            fprintf(stderr, "[ERROR] Required parameters are missing\n"
+                            "Example: %s -i image.j2k -o image.pgm\n",argv[0]);
+            fprintf(stderr, "   Help: %s -h\n",argv[0]);
+			return 1;
+		}
+	}
+
+	return 0;
+}
+
+/* -------------------------------------------------------------------------- */
+/**
+ * Parse decoding area input values
+ * separator = ","
+ */
+/* -------------------------------------------------------------------------- */
+int parse_DA_values( char* inArg, unsigned int *DA_x0, unsigned int *DA_y0, unsigned int *DA_x1, unsigned int *DA_y1)
+{
+	int it = 0;
+	int values[4];
+	char delims[] = ",";
+	char *result = NULL;
+	result = strtok( inArg, delims );
+
+	while( (result != NULL) && (it < 4 ) ) {
+		values[it] = atoi(result);
+		result = strtok( NULL, delims );
+		it++;
+	}
+
+	if (it != 4) {
+		return EXIT_FAILURE;
+	}
+	else{
+		*DA_x0 = (OPJ_UINT32)values[0]; *DA_y0 = (OPJ_UINT32)values[1];
+		*DA_x1 = (OPJ_UINT32)values[2]; *DA_y1 = (OPJ_UINT32)values[3];
+		return EXIT_SUCCESS;
+	}
+}
+
+/* -------------------------------------------------------------------------- */
+
+/**
+sample error callback expecting a FILE* client object
+*/
+static void error_callback(const char *msg, void *client_data) {
+	(void)client_data;
+	fprintf(stdout, "[ERROR] %s", msg);
+}
+/**
+sample warning callback expecting a FILE* client object
+*/
+static void warning_callback(const char *msg, void *client_data) {
+	(void)client_data;
+	fprintf(stdout, "[WARNING] %s", msg);
+}
+/**
+sample debug callback expecting no client object
+*/
+static void info_callback(const char *msg, void *client_data) {
+	(void)client_data;
+	fprintf(stdout, "[INFO] %s", msg);
+}
+
+/* -------------------------------------------------------------------------- */
+/**
+ * OPJ_DECOMPRESS MAIN
+ */
+/* -------------------------------------------------------------------------- */
+int main(int argc, char **argv)
+{
+	opj_dparameters_t parameters;			/* decompression parameters */
+	opj_image_t* image = NULL;
+	opj_stream_t *l_stream = NULL;				/* Stream */
+	opj_codec_t* l_codec = NULL;				/* Handle to a decompressor */
+	opj_codestream_index_t* cstr_index = NULL;
+
+	char indexfilename[OPJ_PATH_LEN];	/* index file name */
+
+	OPJ_INT32 num_images, imageno;
+	img_fol_t img_fol;
+	dircnt_t *dirptr = NULL;
+  int failed = 0;
+
+	/* set decoding parameters to default values */
+	opj_set_default_decoder_parameters(&parameters);
+
+	/* FIXME Initialize indexfilename and img_fol */
+	*indexfilename = 0;
+
+	/* Initialize img_fol */
+	memset(&img_fol,0,sizeof(img_fol_t));
+
+	/* parse input and get user encoding parameters */
+	if(parse_cmdline_decoder(argc, argv, &parameters,&img_fol, indexfilename) == 1) {
+		return EXIT_FAILURE;
+	}
+
+	/* Initialize reading of directory */
+	if(img_fol.set_imgdir==1){	
+		int it_image;
+		num_images=get_num_images(img_fol.imgdirpath);
+
+		dirptr=(dircnt_t*)malloc(sizeof(dircnt_t));
+		if(dirptr){
+			dirptr->filename_buf = (char*)malloc((size_t)num_images*OPJ_PATH_LEN*sizeof(char));	/* Stores at max 10 image file names*/
+			dirptr->filename = (char**) malloc((size_t)num_images*sizeof(char*));
+
+			if(!dirptr->filename_buf){
+				return EXIT_FAILURE;
+			}
+			for(it_image=0;it_image<num_images;it_image++){
+				dirptr->filename[it_image] = dirptr->filename_buf + it_image*OPJ_PATH_LEN;
+			}
+		}
+		if(load_images(dirptr,img_fol.imgdirpath)==1){
+			return EXIT_FAILURE;
+		}
+		if (num_images==0){
+			fprintf(stdout,"Folder is empty\n");
+			return EXIT_FAILURE;
+		}
+	}else{
+		num_images=1;
+	}
+
+	/*Decoding image one by one*/
+	for(imageno = 0; imageno < num_images ; imageno++)	{
+
+		fprintf(stderr,"\n");
+
+		if(img_fol.set_imgdir==1){
+			if (get_next_file(imageno, dirptr,&img_fol, &parameters)) {
+				fprintf(stderr,"skipping file...\n");
+				continue;
+			}
+		}
+
+		/* read the input file and put it in memory */
+		/* ---------------------------------------- */
+
+		l_stream = opj_stream_create_default_file_stream(parameters.infile,1);
+		if (!l_stream){
+			fprintf(stderr, "ERROR -> failed to create the stream from the file %s\n", parameters.infile);
+			return EXIT_FAILURE;
+		}
+
+		/* decode the JPEG2000 stream */
+		/* ---------------------- */
+
+		switch(parameters.decod_format) {
+			case J2K_CFMT:	/* JPEG-2000 codestream */
+			{
+				/* Get a decoder handle */
+				l_codec = opj_create_decompress(OPJ_CODEC_J2K);
+				break;
+			}
+			case JP2_CFMT:	/* JPEG 2000 compressed image data */
+			{
+				/* Get a decoder handle */
+				l_codec = opj_create_decompress(OPJ_CODEC_JP2);
+				break;
+			}
+			case JPT_CFMT:	/* JPEG 2000, JPIP */
+			{
+				/* Get a decoder handle */
+				l_codec = opj_create_decompress(OPJ_CODEC_JPT);
+				break;
+			}
+			default:
+				fprintf(stderr, "skipping file..\n");
+				opj_stream_destroy(l_stream);
+				continue;
+		}
+
+		/* catch events using our callbacks and give a local context */		
+		opj_set_info_handler(l_codec, info_callback,00);
+		opj_set_warning_handler(l_codec, warning_callback,00);
+		opj_set_error_handler(l_codec, error_callback,00);
+
+		/* Setup the decoder decoding parameters using user parameters */
+		if ( !opj_setup_decoder(l_codec, &parameters) ){
+			fprintf(stderr, "ERROR -> opj_compress: failed to setup the decoder\n");
+			opj_stream_destroy(l_stream);
+			opj_destroy_codec(l_codec);
+			return EXIT_FAILURE;
+		}
+
+
+		/* Read the main header of the codestream and if necessary the JP2 boxes*/
+		if(! opj_read_header(l_stream, l_codec, &image)){
+			fprintf(stderr, "ERROR -> opj_decompress: failed to read the header\n");
+			opj_stream_destroy(l_stream);
+			opj_destroy_codec(l_codec);
+			opj_image_destroy(image);
+			return EXIT_FAILURE;
+		}
+
+		if (!parameters.nb_tile_to_decode) {
+			/* Optional if you want decode the entire image */
+			if (!opj_set_decode_area(l_codec, image, (OPJ_INT32)parameters.DA_x0,
+					(OPJ_INT32)parameters.DA_y0, (OPJ_INT32)parameters.DA_x1, (OPJ_INT32)parameters.DA_y1)){
+				fprintf(stderr,	"ERROR -> opj_decompress: failed to set the decoded area\n");
+				opj_stream_destroy(l_stream);
+				opj_destroy_codec(l_codec);
+				opj_image_destroy(image);
+				return EXIT_FAILURE;
+			}
+
+			/* Get the decoded image */
+			if (!(opj_decode(l_codec, l_stream, image) && opj_end_decompress(l_codec,	l_stream))) {
+				fprintf(stderr,"ERROR -> opj_decompress: failed to decode image!\n");
+				opj_destroy_codec(l_codec);
+				opj_stream_destroy(l_stream);
+				opj_image_destroy(image);
+				return EXIT_FAILURE;
+			}
+		}
+		else {
+
+			/* It is just here to illustrate how to use the resolution after set parameters */
+			/*if (!opj_set_decoded_resolution_factor(l_codec, 5)) {
+				fprintf(stderr, "ERROR -> opj_decompress: failed to set the resolution factor tile!\n");
+				opj_destroy_codec(l_codec);
+				opj_stream_destroy(l_stream);
+				opj_image_destroy(image);
+				return EXIT_FAILURE;
+			}*/
+
+			if (!opj_get_decoded_tile(l_codec, l_stream, image, parameters.tile_index)) {
+				fprintf(stderr, "ERROR -> opj_decompress: failed to decode tile!\n");
+				opj_destroy_codec(l_codec);
+				opj_stream_destroy(l_stream);
+				opj_image_destroy(image);
+				return EXIT_FAILURE;
+			}
+			fprintf(stdout, "tile %d is decoded!\n\n", parameters.tile_index);
+		}
+
+		/* Close the byte stream */
+		opj_stream_destroy(l_stream);
+
+		if(image->color_space == OPJ_CLRSPC_SYCC){
+			color_sycc_to_rgb(image); /* FIXME */
+		}
+		
+		if( image->color_space != OPJ_CLRSPC_SYCC 
+			&& image->numcomps == 3 && image->comps[0].dx == image->comps[0].dy
+			&& image->comps[1].dx != 1 )
+			image->color_space = OPJ_CLRSPC_SYCC;
+		else if (image->numcomps <= 2)
+			image->color_space = OPJ_CLRSPC_GRAY;
+
+		if(image->icc_profile_buf) {
+#if defined(OPJ_HAVE_LIBLCMS1) || defined(OPJ_HAVE_LIBLCMS2)
+			color_apply_icc_profile(image); /* FIXME */
+#endif
+			free(image->icc_profile_buf);
+			image->icc_profile_buf = NULL; image->icc_profile_len = 0;
+		}
+
+		/* create output image */
+		/* ------------------- */
+		switch (parameters.cod_format) {
+		case PXM_DFMT:			/* PNM PGM PPM */
+			if (imagetopnm(image, parameters.outfile)) {
+                fprintf(stderr,"[ERROR] Outfile %s not generated\n",parameters.outfile);
+        failed = 1;
+			}
+			else {
+                fprintf(stdout,"[INFO] Generated Outfile %s\n",parameters.outfile);
+			}
+			break;
+
+		case PGX_DFMT:			/* PGX */
+			if(imagetopgx(image, parameters.outfile)){
+                fprintf(stderr,"[ERROR] Outfile %s not generated\n",parameters.outfile);
+        failed = 1;
+			}
+			else {
+                fprintf(stdout,"[INFO] Generated Outfile %s\n",parameters.outfile);
+			}
+			break;
+
+		case BMP_DFMT:			/* BMP */
+			if(imagetobmp(image, parameters.outfile)){
+                fprintf(stderr,"[ERROR] Outfile %s not generated\n",parameters.outfile);
+        failed = 1;
+			}
+			else {
+                fprintf(stdout,"[INFO] Generated Outfile %s\n",parameters.outfile);
+			}
+			break;
+#ifdef OPJ_HAVE_LIBTIFF
+		case TIF_DFMT:			/* TIFF */
+			if(imagetotif(image, parameters.outfile)){
+                fprintf(stderr,"[ERROR] Outfile %s not generated\n",parameters.outfile);
+        failed = 1;
+			}
+			else {
+                fprintf(stdout,"[INFO] Generated Outfile %s\n",parameters.outfile);
+			}
+			break;
+#endif /* OPJ_HAVE_LIBTIFF */
+		case RAW_DFMT:			/* RAW */
+			if(imagetoraw(image, parameters.outfile)){
+                fprintf(stderr,"[ERROR] Error generating raw file. Outfile %s not generated\n",parameters.outfile);
+        failed = 1;
+			}
+			else {
+                fprintf(stdout,"[INFO] Generated Outfile %s\n",parameters.outfile);
+			}
+			break;
+
+		case RAWL_DFMT:			/* RAWL */
+			if(imagetorawl(image, parameters.outfile)){
+                fprintf(stderr,"[ERROR] Error generating rawl file. Outfile %s not generated\n",parameters.outfile);
+        failed = 1;
+			}
+			else {
+                fprintf(stdout,"[INFO] Generated Outfile %s\n",parameters.outfile);
+			}
+			break;
+
+		case TGA_DFMT:			/* TGA */
+			if(imagetotga(image, parameters.outfile)){
+                fprintf(stderr,"[ERROR] Error generating tga file. Outfile %s not generated\n",parameters.outfile);
+        failed = 1;
+			}
+			else {
+                fprintf(stdout,"[INFO] Generated Outfile %s\n",parameters.outfile);
+			}
+			break;
+#ifdef OPJ_HAVE_LIBPNG
+		case PNG_DFMT:			/* PNG */
+			if(imagetopng(image, parameters.outfile)){
+                fprintf(stderr,"[ERROR] Error generating png file. Outfile %s not generated\n",parameters.outfile);
+        failed = 1;
+			}
+			else {
+                fprintf(stdout,"[INFO] Generated Outfile %s\n",parameters.outfile);
+			}
+			break;
+#endif /* OPJ_HAVE_LIBPNG */
+/* Can happen if output file is TIFF or PNG
+ * and OPJ_HAVE_LIBTIF or OPJ_HAVE_LIBPNG is undefined
+*/
+			default:
+                fprintf(stderr,"[ERROR] Outfile %s not generated\n",parameters.outfile);
+        failed = 1;
+		}
+
+		/* free remaining structures */
+		if (l_codec) {
+			opj_destroy_codec(l_codec);
+		}
+
+
+		/* free image data structure */
+		opj_image_destroy(image);
+
+		/* destroy the codestream index */
+		opj_destroy_cstr_index(&cstr_index);
+
+		if(failed) remove(parameters.outfile);
+	}
+	return failed ? EXIT_FAILURE : EXIT_SUCCESS;
+}
+/*end main*/
+
+
+
+

src/bin/jp2/opj_dump.c

@@ -0,0 +1,585 @@
+/*
+ * The copyright in this software is being made available under the 2-clauses 
+ * BSD License, included below. This software may be subject to other third 
+ * party and contributor rights, including patent rights, and no such rights
+ * are granted under this license.
+ *
+ * Copyright (c) 2010, Mathieu Malaterre, GDCM
+ * Copyright (c) 2011-2012, Centre National d'Etudes Spatiales (CNES), France 
+ * Copyright (c) 2012, CS Systemes d'Information, France
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions
+ * are met:
+ * 1. Redistributions of source code must retain the above copyright
+ *    notice, this list of conditions and the following disclaimer.
+ * 2. Redistributions in binary form must reproduce the above copyright
+ *    notice, this list of conditions and the following disclaimer in the
+ *    documentation and/or other materials provided with the distribution.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS `AS IS'
+ * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED.  IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
+ * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+ * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+ * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+ * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+ * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+ * POSSIBILITY OF SUCH DAMAGE.
+ */
+#include "opj_config.h"
+
+#include <stdio.h>
+#include <string.h>
+#include <stdlib.h>
+#include <math.h>
+
+#ifdef _WIN32
+#include "windirent.h"
+#else
+#include <dirent.h>
+#endif /* _WIN32 */
+
+#ifdef _WIN32
+#include <windows.h>
+#else
+#include <strings.h>
+#define _stricmp strcasecmp
+#define _strnicmp strncasecmp
+#endif /* _WIN32 */
+
+#include "openjpeg.h"
+#include "opj_getopt.h"
+#include "convert.h"
+#include "index.h"
+
+#include "format_defs.h"
+
+typedef struct dircnt{
+	/** Buffer for holding images read from Directory*/
+	char *filename_buf;
+	/** Pointer to the buffer*/
+	char **filename;
+}dircnt_t;
+
+
+typedef struct img_folder{
+	/** The directory path of the folder containing input images*/
+	char *imgdirpath;
+	/** Output format*/
+	const char *out_format;
+	/** Enable option*/
+	char set_imgdir;
+	/** Enable Cod Format for output*/
+	char set_out_format;
+
+  int flag;
+}img_fol_t;
+
+/* -------------------------------------------------------------------------- */
+/* Declarations                                                               */
+static int get_num_images(char *imgdirpath);
+static int load_images(dircnt_t *dirptr, char *imgdirpath);
+static int get_file_format(const char *filename);
+static char get_next_file(int imageno,dircnt_t *dirptr,img_fol_t *img_fol, opj_dparameters_t *parameters);
+static int infile_format(const char *fname);
+
+static int parse_cmdline_decoder(int argc, char **argv, opj_dparameters_t *parameters,img_fol_t *img_fol);
+
+/* -------------------------------------------------------------------------- */
+static void decode_help_display(void) {
+    fprintf(stdout,"\nThis is the opj_dump utility from the OpenJPEG project.\n"
+            "It dumps JPEG 2000 codestream info to stdout or a given file.\n"
+            "It has been compiled against openjp2 library v%s.\n\n",opj_version());
+
+    fprintf(stdout,"Parameters:\n");
+    fprintf(stdout,"-----------\n");
+    fprintf(stdout,"\n");
+    fprintf(stdout,"  -ImgDir <directory>\n");
+	fprintf(stdout,"	Image file Directory path \n");
+	fprintf(stdout,"  -i <compressed file>\n");
+	fprintf(stdout,"    REQUIRED only if an Input image directory not specified\n");
+	fprintf(stdout,"    Currently accepts J2K-files, JP2-files and JPT-files. The file type\n");
+	fprintf(stdout,"    is identified based on its suffix.\n");
+	fprintf(stdout,"  -o <output file>\n");
+	fprintf(stdout,"    OPTIONAL\n");
+	fprintf(stdout,"    Output file where file info will be dump.\n");
+	fprintf(stdout,"    By default it will be in the stdout.\n");
+    fprintf(stdout,"  -v "); /* FIXME WIP_MSD */
+	fprintf(stdout,"    OPTIONAL\n");
+    fprintf(stdout,"    Enable informative messages\n");
+    fprintf(stdout,"    By default verbose mode is off.\n");
+	fprintf(stdout,"\n");
+}
+
+/* -------------------------------------------------------------------------- */
+static int get_num_images(char *imgdirpath){
+	DIR *dir;
+	struct dirent* content;	
+	int num_images = 0;
+
+	/*Reading the input images from given input directory*/
+
+	dir= opendir(imgdirpath);
+	if(!dir){
+		fprintf(stderr,"Could not open Folder %s\n",imgdirpath);
+		return 0;
+	}
+	
+	while((content=readdir(dir))!=NULL){
+		if(strcmp(".",content->d_name)==0 || strcmp("..",content->d_name)==0 )
+			continue;
+		num_images++;
+	}
+	return num_images;
+}
+
+/* -------------------------------------------------------------------------- */
+static int load_images(dircnt_t *dirptr, char *imgdirpath){
+	DIR *dir;
+	struct dirent* content;	
+	int i = 0;
+
+	/*Reading the input images from given input directory*/
+
+	dir= opendir(imgdirpath);
+	if(!dir){
+		fprintf(stderr,"Could not open Folder %s\n",imgdirpath);
+		return 1;
+	}else	{
+		fprintf(stderr,"Folder opened successfully\n");
+	}
+	
+	while((content=readdir(dir))!=NULL){
+		if(strcmp(".",content->d_name)==0 || strcmp("..",content->d_name)==0 )
+			continue;
+
+		strcpy(dirptr->filename[i],content->d_name);
+		i++;
+	}
+	return 0;	
+}
+
+/* -------------------------------------------------------------------------- */
+static int get_file_format(const char *filename) {
+	unsigned int i;
+	static const char *extension[] = {"pgx", "pnm", "pgm", "ppm", "bmp","tif", "raw", "tga", "png", "j2k", "jp2", "jpt", "j2c", "jpc"  };
+	static const int format[] = { PGX_DFMT, PXM_DFMT, PXM_DFMT, PXM_DFMT, BMP_DFMT, TIF_DFMT, RAW_DFMT, TGA_DFMT, PNG_DFMT, J2K_CFMT, JP2_CFMT, JPT_CFMT, J2K_CFMT, J2K_CFMT };
+	char * ext = strrchr(filename, '.');
+	if (ext == NULL)
+		return -1;
+	ext++;
+	if(ext) {
+		for(i = 0; i < sizeof(format)/sizeof(*format); i++) {
+			if(_strnicmp(ext, extension[i], 3) == 0) {
+				return format[i];
+			}
+		}
+	}
+
+	return -1;
+}
+
+/* -------------------------------------------------------------------------- */
+static char get_next_file(int imageno,dircnt_t *dirptr,img_fol_t *img_fol, opj_dparameters_t *parameters){
+	char image_filename[OPJ_PATH_LEN], infilename[OPJ_PATH_LEN],outfilename[OPJ_PATH_LEN],temp_ofname[OPJ_PATH_LEN];
+	char *temp_p, temp1[OPJ_PATH_LEN]="";
+
+	strcpy(image_filename,dirptr->filename[imageno]);
+	fprintf(stderr,"File Number %d \"%s\"\n",imageno,image_filename);
+	parameters->decod_format = get_file_format(image_filename);
+	if (parameters->decod_format == -1)
+		return 1;
+	sprintf(infilename,"%s/%s",img_fol->imgdirpath,image_filename);
+	strncpy(parameters->infile, infilename, sizeof(infilename));
+
+	/*Set output file*/
+	strcpy(temp_ofname,strtok(image_filename,"."));
+	while((temp_p = strtok(NULL,".")) != NULL){
+		strcat(temp_ofname,temp1);
+		sprintf(temp1,".%s",temp_p);
+	}
+	if(img_fol->set_out_format==1){
+		sprintf(outfilename,"%s/%s.%s",img_fol->imgdirpath,temp_ofname,img_fol->out_format);
+		strncpy(parameters->outfile, outfilename, sizeof(outfilename));
+	}
+	return 0;
+}
+
+/* -------------------------------------------------------------------------- */
+#define JP2_RFC3745_MAGIC "\x00\x00\x00\x0c\x6a\x50\x20\x20\x0d\x0a\x87\x0a"
+#define JP2_MAGIC "\x0d\x0a\x87\x0a"
+/* position 45: "\xff\x52" */
+#define J2K_CODESTREAM_MAGIC "\xff\x4f\xff\x51"
+
+static int infile_format(const char *fname)
+{
+	FILE *reader;
+	const char *s, *magic_s;
+	int ext_format, magic_format;
+	unsigned char buf[12];
+	size_t l_nb_read; 
+
+	reader = fopen(fname, "rb");
+
+	if (reader == NULL)
+		return -1;
+
+	memset(buf, 0, 12);
+	l_nb_read = fread(buf, 1, 12, reader);
+	fclose(reader);
+	if (l_nb_read != 12)
+		return -1;
+
+
+
+	ext_format = get_file_format(fname);
+
+	if (ext_format == JPT_CFMT)
+		return JPT_CFMT;
+
+	if (memcmp(buf, JP2_RFC3745_MAGIC, 12) == 0 || memcmp(buf, JP2_MAGIC, 4) == 0) {
+		magic_format = JP2_CFMT;
+		magic_s = ".jp2";
+	}
+	else if (memcmp(buf, J2K_CODESTREAM_MAGIC, 4) == 0) {
+		magic_format = J2K_CFMT;
+		magic_s = ".j2k or .jpc or .j2c";
+	}
+	else
+		return -1;
+
+	if (magic_format == ext_format)
+		return ext_format;
+
+	s = fname + strlen(fname) - 4;
+
+	fputs("\n===========================================\n", stderr);
+	fprintf(stderr, "The extension of this file is incorrect.\n"
+					"FOUND %s. SHOULD BE %s\n", s, magic_s);
+	fputs("===========================================\n", stderr);
+
+	return magic_format;
+}
+/* -------------------------------------------------------------------------- */
+/**
+ * Parse the command line
+ */
+/* -------------------------------------------------------------------------- */
+static int parse_cmdline_decoder(int argc, char **argv, opj_dparameters_t *parameters,img_fol_t *img_fol) {
+	int totlen, c;
+	opj_option_t long_option[]={
+        {"ImgDir",REQ_ARG, NULL ,'y'}
+	};
+    const char optlist[] = "i:o:f:hv";
+
+	totlen=sizeof(long_option);
+	img_fol->set_out_format = 0;
+	do {
+		c = opj_getopt_long(argc, argv,optlist,long_option,totlen);
+		if (c == -1)
+			break;
+		switch (c) {
+			case 'i':			/* input file */
+			{
+				char *infile = opj_optarg;
+				parameters->decod_format = infile_format(infile);
+				switch(parameters->decod_format) {
+					case J2K_CFMT:
+						break;
+					case JP2_CFMT:
+						break;
+					case JPT_CFMT:
+                    break;
+                default:
+                    fprintf(stderr,
+                            "[ERROR] Unknown input file format: %s \n"
+                            "        Known file formats are *.j2k, *.jp2, *.jpc or *.jpt\n",
+                            infile);
+                    return 1;
+				}
+				strncpy(parameters->infile, infile, sizeof(parameters->infile)-1);
+			}
+			break;
+
+				/* ------------------------------------------------------ */
+
+			case 'o':     /* output file */
+			{
+			  char *outfile = opj_optarg;
+			  strncpy(parameters->outfile, outfile, sizeof(parameters->outfile)-1);
+			}
+			break;
+				
+				/* ----------------------------------------------------- */
+      case 'f': 			/* flag */
+        img_fol->flag = atoi(opj_optarg);
+        break;
+				/* ----------------------------------------------------- */
+
+			case 'h': 			/* display an help description */
+				decode_help_display();
+				return 1;				
+
+				/* ------------------------------------------------------ */
+
+			case 'y':			/* Image Directory path */
+			{
+				img_fol->imgdirpath = (char*)malloc(strlen(opj_optarg) + 1);
+				strcpy(img_fol->imgdirpath,opj_optarg);
+				img_fol->set_imgdir=1;
+			}
+			break;
+
+			/* ----------------------------------------------------- */
+
+            case 'v':     		/* Verbose mode */
+			{
+                parameters->m_verbose = 1;
+			}
+			break;
+			
+				/* ----------------------------------------------------- */
+        default:
+            fprintf(stderr, "[WARNING] An invalid option has been ignored.\n");
+            break;
+        }
+	}while(c != -1);
+
+	/* check for possible errors */
+	if(img_fol->set_imgdir==1){
+		if(!(parameters->infile[0]==0)){
+            fprintf(stderr, "[ERROR] options -ImgDir and -i cannot be used together.\n");
+			return 1;
+		}
+		if(img_fol->set_out_format == 0){
+            fprintf(stderr, "[ERROR] When -ImgDir is used, -OutFor <FORMAT> must be used.\n");
+            fprintf(stderr, "Only one format allowed.\n"
+                            "Valid format are PGM, PPM, PNM, PGX, BMP, TIF, RAW and TGA.\n");
+			return 1;
+		}
+		if(!(parameters->outfile[0] == 0)){
+            fprintf(stderr, "[ERROR] options -ImgDir and -o cannot be used together\n");
+			return 1;
+		}
+	}else{
+		if(parameters->infile[0] == 0) {
+            fprintf(stderr, "[ERROR] Required parameter is missing\n");
+			fprintf(stderr, "Example: %s -i image.j2k\n",argv[0]);
+            fprintf(stderr, "   Help: %s -h\n",argv[0]);
+			return 1;
+		}
+	}
+
+	return 0;
+}
+
+/* -------------------------------------------------------------------------- */
+
+/**
+sample error debug callback expecting no client object
+*/
+static void error_callback(const char *msg, void *client_data) {
+	(void)client_data;
+	fprintf(stdout, "[ERROR] %s", msg);
+}
+/**
+sample warning debug callback expecting no client object
+*/
+static void warning_callback(const char *msg, void *client_data) {
+	(void)client_data;
+	fprintf(stdout, "[WARNING] %s", msg);
+}
+/**
+sample debug callback expecting no client object
+*/
+static void info_callback(const char *msg, void *client_data) {
+	(void)client_data;
+	fprintf(stdout, "[INFO] %s", msg);
+}
+
+/* -------------------------------------------------------------------------- */
+/**
+ * OPJ_DUMP MAIN
+ */
+/* -------------------------------------------------------------------------- */
+int main(int argc, char *argv[])
+{
+	FILE *fout = NULL;
+
+	opj_dparameters_t parameters;			/* Decompression parameters */
+	opj_image_t* image = NULL;					/* Image structure */
+	opj_codec_t* l_codec = NULL;				/* Handle to a decompressor */
+	opj_stream_t *l_stream = NULL;				/* Stream */
+	opj_codestream_info_v2_t* cstr_info = NULL;
+	opj_codestream_index_t* cstr_index = NULL;
+
+	OPJ_INT32 num_images, imageno;
+	img_fol_t img_fol;
+	dircnt_t *dirptr = NULL;
+
+#ifdef MSD
+	OPJ_BOOL l_go_on = OPJ_TRUE;
+	OPJ_UINT32 l_max_data_size = 1000;
+	OPJ_BYTE * l_data = (OPJ_BYTE *) malloc(1000);
+#endif
+
+	/* Set decoding parameters to default values */
+	opj_set_default_decoder_parameters(&parameters);
+
+	/* Initialize img_fol */
+	memset(&img_fol,0,sizeof(img_fol_t));
+  img_fol.flag = OPJ_IMG_INFO | OPJ_J2K_MH_INFO | OPJ_J2K_MH_IND;
+
+	/* Parse input and get user encoding parameters */
+	if(parse_cmdline_decoder(argc, argv, &parameters,&img_fol) == 1) {
+		return EXIT_FAILURE;
+	}
+
+	/* Initialize reading of directory */
+	if(img_fol.set_imgdir==1){	
+		int it_image;
+		num_images=get_num_images(img_fol.imgdirpath);
+
+		dirptr=(dircnt_t*)malloc(sizeof(dircnt_t));
+		if(dirptr){
+			dirptr->filename_buf = (char*)malloc((size_t)num_images*OPJ_PATH_LEN*sizeof(char));	/* Stores at max 10 image file names*/
+			dirptr->filename = (char**) malloc((size_t)num_images*sizeof(char*));
+
+			if(!dirptr->filename_buf){
+				return EXIT_FAILURE;
+			}
+
+			for(it_image=0;it_image<num_images;it_image++){
+				dirptr->filename[it_image] = dirptr->filename_buf + it_image*OPJ_PATH_LEN;
+			}
+		}
+		if(load_images(dirptr,img_fol.imgdirpath)==1){
+			return EXIT_FAILURE;
+		}
+
+		if (num_images==0){
+			fprintf(stdout,"Folder is empty\n");
+			return EXIT_FAILURE;
+		}
+	}else{
+		num_images=1;
+	}
+
+	/* Try to open for writing the output file if necessary */
+	if (parameters.outfile[0] != 0){
+		fout = fopen(parameters.outfile,"w");
+		if (!fout){
+			fprintf(stderr, "ERROR -> failed to open %s for writing\n", parameters.outfile);
+			return EXIT_FAILURE;
+		}
+	}
+	else
+		fout = stdout;
+
+	/* Read the header of each image one by one */
+	for(imageno = 0; imageno < num_images ; imageno++){
+
+		fprintf(stderr,"\n");
+
+		if(img_fol.set_imgdir==1){
+			if (get_next_file(imageno, dirptr,&img_fol, &parameters)) {
+				fprintf(stderr,"skipping file...\n");
+				continue;
+			}
+		}
+
+		/* Read the input file and put it in memory */
+		/* ---------------------------------------- */
+
+		l_stream = opj_stream_create_default_file_stream(parameters.infile,1);
+		if (!l_stream){
+			fprintf(stderr, "ERROR -> failed to create the stream from the file %s\n",parameters.infile);
+			return EXIT_FAILURE;
+		}
+
+		/* Read the JPEG2000 stream */
+		/* ------------------------ */
+
+		switch(parameters.decod_format) {
+			case J2K_CFMT:	/* JPEG-2000 codestream */
+			{
+				/* Get a decoder handle */
+				l_codec = opj_create_decompress(OPJ_CODEC_J2K);
+				break;
+			}
+			case JP2_CFMT:	/* JPEG 2000 compressed image data */
+			{
+				/* Get a decoder handle */
+				l_codec = opj_create_decompress(OPJ_CODEC_JP2);
+				break;
+			}
+			case JPT_CFMT:	/* JPEG 2000, JPIP */
+			{
+				/* Get a decoder handle */
+				l_codec = opj_create_decompress(OPJ_CODEC_JPT);
+				break;
+			}
+			default:
+				fprintf(stderr, "skipping file..\n");
+				opj_stream_destroy(l_stream);
+				continue;
+		}
+
+		/* catch events using our callbacks and give a local context */		
+		opj_set_info_handler(l_codec, info_callback,00);
+		opj_set_warning_handler(l_codec, warning_callback,00);
+		opj_set_error_handler(l_codec, error_callback,00);
+
+		/* Setup the decoder decoding parameters using user parameters */
+		if ( !opj_setup_decoder(l_codec, &parameters) ){
+			fprintf(stderr, "ERROR -> opj_dump: failed to setup the decoder\n");
+			opj_stream_destroy(l_stream);
+			opj_destroy_codec(l_codec);
+			fclose(fout);
+			return EXIT_FAILURE;
+		}
+
+		/* Read the main header of the codestream and if necessary the JP2 boxes*/
+		if(! opj_read_header(l_stream, l_codec, &image)){
+			fprintf(stderr, "ERROR -> opj_dump: failed to read the header\n");
+			opj_stream_destroy(l_stream);
+			opj_destroy_codec(l_codec);
+			opj_image_destroy(image);
+			fclose(fout);
+			return EXIT_FAILURE;
+		}
+
+		opj_dump_codec(l_codec, img_fol.flag, fout );
+
+		cstr_info = opj_get_cstr_info(l_codec);
+
+		cstr_index = opj_get_cstr_index(l_codec);
+
+		/* close the byte stream */
+		opj_stream_destroy(l_stream);
+
+		/* free remaining structures */
+		if (l_codec) {
+			opj_destroy_codec(l_codec);
+		}
+
+		/* destroy the image header */
+		opj_image_destroy(image);
+
+		/* destroy the codestream index */
+		opj_destroy_cstr_index(&cstr_index);
+
+		/* destroy the codestream info */
+		opj_destroy_cstr_info(&cstr_info);
+
+	}
+
+	/* Close the output file */
+	fclose(fout);
+
+  return EXIT_SUCCESS;
+}

src/bin/jp3d/CMakeLists.txt

@@ -0,0 +1,41 @@
+# Build the demo app, small examples
+
+# First thing define the common source:
+SET(common_SRCS
+  convert.c
+  ${OPENJPEG_SOURCE_DIR}/src/bin/common/opj_getopt.c
+  )
+
+# Headers file are located here:
+include_directories(
+  ${OPENJPEG_BINARY_DIR}/src/lib/openjp2 # opj_config.h
+  ${OPENJPEG_SOURCE_DIR}/src/lib/openjp3d
+  ${LCMS_INCLUDE_DIRNAME}
+  ${OPENJPEG_SOURCE_DIR}/src/bin/common
+  ${Z_INCLUDE_DIRNAME}
+  ${PNG_INCLUDE_DIRNAME}
+  ${TIFF_INCLUDE_DIRNAME}
+  )
+
+if(WIN32)
+  if(BUILD_SHARED_LIBS)
+    add_definitions(-DOPJ_EXPORTS)
+  else()
+    add_definitions(-DOPJ_STATIC)
+  endif()
+endif()
+
+# Loop over all executables:
+FOREACH(exe opj_jp3d_compress opj_jp3d_decompress)
+  ADD_EXECUTABLE(${exe} ${exe}.c ${common_SRCS})
+  TARGET_LINK_LIBRARIES(${exe} openjp3d)
+  # On unix you need to link to the math library:
+  IF(UNIX)
+    TARGET_LINK_LIBRARIES(${exe} m)
+  ENDIF(UNIX)
+  # Install exe
+  INSTALL(TARGETS ${exe}
+    EXPORT OpenJP3DTargets
+    DESTINATION ${OPENJPEG_INSTALL_BIN_DIR} COMPONENT Applications
+  )
+endforeach()

src/bin/jp3d/convert.h

@@ -0,0 +1,51 @@
+/*
+ * Copyright (c) 2001-2003, David Janssens
+ * Copyright (c) 2002-2003, Yannick Verschueren
+ * Copyright (c) 2003-2005, Francois Devaux and Antonin Descampe
+ * Copyright (c) 2005, Herve Drolon, FreeImage Team
+ * Copyright (c) 2002-2005, Communications and remote sensing Laboratory, Universite catholique de Louvain, Belgium
+ * Copyright (c) 2006, M<>nica D<>ez Garc<72>a, Image Processing Laboratory, University of Valladolid, Spain
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions
+ * are met:
+ * 1. Redistributions of source code must retain the above copyright
+ *    notice, this list of conditions and the following disclaimer.
+ * 2. Redistributions in binary form must reproduce the above copyright
+ *    notice, this list of conditions and the following disclaimer in the
+ *    documentation and/or other materials provided with the distribution.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS `AS IS'
+ * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED.  IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
+ * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+ * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+ * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+ * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+ * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+ * POSSIBILITY OF SUCH DAMAGE.
+ */
+#ifndef __JP3D_CONVERT_H
+#define __JP3D_CONVERT_H
+
+/**
+Load a single volume component encoded in PGX file format
+@param filename Name of the PGX file to load
+@param parameters *List ?*
+@return Returns a greyscale volume if successful, returns NULL otherwise
+*/
+opj_volume_t* pgxtovolume(char *filename, opj_cparameters_t *parameters);
+
+int volumetopgx(opj_volume_t *volume, char *outfile);
+
+opj_volume_t* bintovolume(char *filename,char *fileimg, opj_cparameters_t *parameters);
+
+int volumetobin(opj_volume_t *volume, char *outfile);
+
+opj_volume_t* imgtovolume(char *fileimg, opj_cparameters_t *parameters);
+
+#endif /* __J2K_CONVERT_H */
+

src/bin/jp3d/getopt.c

@@ -0,0 +1,109 @@
+/*
+ * Copyright (c) 1987, 1993, 1994
+ *	The Regents of the University of California.  All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions
+ * are met:
+ * 1. Redistributions of source code must retain the above copyright
+ *    notice, this list of conditions and the following disclaimer.
+ * 2. Redistributions in binary form must reproduce the above copyright
+ *    notice, this list of conditions and the following disclaimer in the
+ *    documentation and/or other materials provided with the distribution.
+ * 3. All advertising materials mentioning features or use of this software
+ *    must display the following acknowledgement:
+ *	This product includes software developed by the University of
+ *	California, Berkeley and its contributors.
+ * 4. Neither the name of the University nor the names of its contributors
+ *    may be used to endorse or promote products derived from this software
+ *    without specific prior written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS'' AND
+ * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED.  IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS BE LIABLE
+ * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+ * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS
+ * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
+ * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
+ * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
+ * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
+ * SUCH DAMAGE.
+ */
+
+/* last review : october 29th, 2002 */
+
+#if defined(LIBC_SCCS) && !defined(lint)
+static char sccsid[] = "@(#)getopt.c	8.3 (Berkeley) 4/27/95";
+#endif				/* LIBC_SCCS and not lint */
+
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+
+int opterr = 1,			/* if error message should be printed */
+ optind = 1,			/* index into parent argv vector */
+ optopt,				/* character checked for validity */
+ optreset;				/* reset getopt */
+char *optarg;			/* argument associated with option */
+
+#define	BADCH	(int)'?'
+#define	BADARG	(int)':'
+#define	EMSG	""
+
+/*
+ * getopt --
+ *	Parse argc/argv argument vector.
+ */
+int getopt(int nargc, char *const *nargv, const char *ostr) {
+	
+  #  define __progname nargv[0] /* program name */
+	
+  static char *place = EMSG;	/* option letter processing */
+  char *oli;					/* option letter list index */
+
+  if (optreset || !*place) {	/* update scanning pointer */
+    optreset = 0;
+    if (optind >= nargc || *(place = nargv[optind]) != '-') {
+      place = EMSG;
+      return (-1);
+    }
+    if (place[1] && *++place == '-') {	/* found "--" */
+      ++optind;
+      place = EMSG;
+      return (-1);
+    }
+  }	/* option letter okay? */
+  
+  if ((optopt = (int) *place++) == (int) ':' || !(oli = strchr(ostr, optopt))) {
+    /* if the user didn't specify '-' as an option, assume it means -1. */
+    if (optopt == (int) '-')
+      return (-1);
+    if (!*place)
+      ++optind;
+    if (opterr && *ostr != ':')
+      (void) fprintf(stdout,"[ERROR] %s: illegal option -- %c\n", __progname, optopt);
+    return (BADCH);
+  }
+
+  if (*++oli != ':') {		/* don't need argument */
+    optarg = NULL;
+    if (!*place)
+      ++optind;
+  } else {					/* need an argument */
+    if (*place)						/* no white space */
+      optarg = place;
+    else if (nargc <= ++optind) {	/* no arg */
+      place = EMSG;
+      if (*ostr == ':')
+		return (BADARG);
+      if (opterr)
+		(void) fprintf(stdout, "[ERROR] %s: option requires an argument -- %c\n", __progname, optopt);
+      return (BADCH);
+    } else							/* white space */
+      optarg = nargv[optind];
+    place = EMSG;
+    ++optind;
+  }
+  return (optopt);		/* dump back option letter */
+}

src/bin/jp3d/getopt.h

@@ -0,0 +1,14 @@
+/* last review : october 29th, 2002 */
+
+#ifndef _GETOPT_H_
+#define _GETOPT_H_
+
+extern int opterr;
+extern int optind;
+extern int optopt;
+extern int optreset;
+extern char *optarg;
+
+extern int getopt(int nargc, char *const *nargv, const char *ostr);
+
+#endif				/* _GETOPT_H_ */

src/bin/jp3d/opj_jp3d_compress.c

@@ -0,0 +1,907 @@
+/*
+ * Copyright (c) 2001-2003, David Janssens
+ * Copyright (c) 2002-2003, Yannick Verschueren
+ * Copyright (c) 2003-2005, Francois Devaux and Antonin Descampe
+ * Copyright (c) 2005, Herve Drolon, FreeImage Team
+ * Copyright (c) 2002-2005, Communications and remote sensing Laboratory, Universite catholique de Louvain, Belgium
+ * Copyright (c) 2006, M<>nica D<>ez Garc<72>a, Image Processing Laboratory, University of Valladolid, Spain
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions
+ * are met:
+ * 1. Redistributions of source code must retain the above copyright
+ *    notice, this list of conditions and the following disclaimer.
+ * 2. Redistributions in binary form must reproduce the above copyright
+ *    notice, this list of conditions and the following disclaimer in the
+ *    documentation and/or other materials provided with the distribution.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS `AS IS'
+ * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED.  IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
+ * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+ * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+ * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+ * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+ * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+ * POSSIBILITY OF SUCH DAMAGE.
+ */
+#include <stdio.h>
+#include <string.h>
+#include <stdlib.h>
+
+#include "opj_config.h"
+#include "openjp3d.h"
+#include "opj_getopt.h"
+#include "convert.h"
+
+#ifdef _WIN32
+#include <windows.h>
+#else
+#define stricmp strcasecmp
+#define strnicmp strncasecmp
+#endif /* _WIN32 */
+
+/* ----------------------------------------------------------------------- */
+
+void encode_help_display() {
+	fprintf(stdout,"List of parameters for the JPEG2000 Part 10 encoder:\n");
+	fprintf(stdout,"------------\n");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"Required Parameters (except with -h):\n");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"-i           : source file  (-i source.bin or source*.pgx) \n");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"-m           : source characteristics file (-m imgfile.img) \n");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"-o           : destination file (-o dest.jp3d) \n");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"Optional Parameters:\n");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"-h           : display the help information \n ");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"-n           : number of resolutions (-n 3,3,3) \n");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"-I           : use the irreversible transforms: ICT + DWT 9-7 (-I) \n");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"-C           : coding algorithm (-C 2EB) [2EB, 3EB] \n");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"-r           : different compression ratios for successive layers (-r 20,10,5)\n ");
+	fprintf(stdout,"	         - The rate specified for each quality level is the desired compression factor.\n");
+	fprintf(stdout,"	         - Rate 1 means lossless compression\n");
+	fprintf(stdout,"               (options -r and -q cannot be used together)\n ");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"-q           : different psnr for successive layers (-q 30,40,50) \n ");
+	fprintf(stdout,"               (options -r and -q cannot be used together)\n ");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"-b           : size of code block (-b 32,32,32) \n");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"-c           : size of precinct (-c 128,128,128) \n");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"-t           : size of tile (-t 512,512,512) \n");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"-p           : progression order (-p LRCP) [LRCP, RLCP, RPCL, PCRL, CPRL] \n");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"-s           : subsampling factor (-s 2,2,2) [-s X,Y,Z] \n");
+	fprintf(stdout,"			  - Remark: subsampling bigger than 2 can produce error\n");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"-SOP         : write SOP marker before each packet \n");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"-EPH         : write EPH marker after each header packet \n");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"-M           : code-block style (-M 0) [1=BYPASS(LAZY) 2=RESET 4=RESTART(TERMALL)\n");
+	fprintf(stdout,"                 8=VSC 16=PTERM 32=SEGSYM 64=3DCTXT] \n");
+	fprintf(stdout,"                 Indicate multiple modes by adding their values. \n");
+	fprintf(stdout,"                 ex: RESTART(4) + RESET(2) + SEGMARK(32) = -M 38\n");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"-D           : define DC offset (-D 12) \n");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"-x           : create an index file *.Idx (-x index_name.Idx) \n");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"-ROI         : c=%%d,U=%%d : quantization indices upshifted \n");
+	fprintf(stdout,"               for component c=%%d [%%d = 0,1,2]\n");
+	fprintf(stdout,"               with a value of U=%%d [0 <= %%d <= 37] (i.e. -ROI:c=0,U=25) \n");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"-d           : offset of the origin of the volume (-d 150,300,100) \n");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"-l           : offset of the origin of the tiles (-l 100,75,25) \n");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"DEFAULT CODING:\n");
+	fprintf(stdout,"------------\n");
+	fprintf(stdout,"\n");
+	fprintf(stdout," * Lossless\n");
+	fprintf(stdout," * 1 tile\n");
+	fprintf(stdout," * Size of precinct : 2^15 x 2^15 x 2^15 (means 1 precinct)\n");
+	fprintf(stdout," * Size of code-block : 64 x 64 x 64\n");
+	fprintf(stdout," * Number of resolutions in x, y and z axis: 3\n");
+	fprintf(stdout," * No SOP marker in the codestream\n");
+	fprintf(stdout," * No EPH marker in the codestream\n");
+	fprintf(stdout," * No sub-sampling in x, y or z direction\n");
+	fprintf(stdout," * No mode switch activated\n");
+	fprintf(stdout," * Progression order: LRCP\n");
+	fprintf(stdout," * No index file\n");
+	fprintf(stdout," * No ROI upshifted\n");
+	fprintf(stdout," * No offset of the origin of the volume\n");
+	fprintf(stdout," * No offset of the origin of the tiles\n");
+	fprintf(stdout," * Reversible DWT 5-3 on each 2D slice\n");
+	fprintf(stdout," * Coding algorithm: 2D-EBCOT \n");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"REMARKS:\n");
+	fprintf(stdout,"---------\n");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"- The markers written to the main_header are : SOC SIZ COD QCD COM.\n");
+	fprintf(stdout,"- COD and QCD markers will never appear in the tile_header.\n");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"- You need enough disk space memory (twice the original) to encode \n");
+	fprintf(stdout,"the volume,i.e. for a 1.5 GB volume you need a minimum of 3GB of disk memory)\n");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"- When loading *.pgx files, a relative path to directory is needed for input argument \n");
+	fprintf(stdout," followed by the common prefix of the slices and a '*' character representing sequential numeration.\n");
+	fprintf(stdout,"( -i relativepath/slices*.pgx )\n");
+	fprintf(stdout,"\n");
+	fprintf(stdout," - The index file has the structure below:\n");
+	fprintf(stdout,"\n");
+	fprintf(stdout,"\t	Image_height Image_width Image_depth\n");
+	fprintf(stdout,"\t	Progression order: 0 (LRCP)\n");
+	fprintf(stdout,"\t	Tiles_size_X Tiles_size_Y Tiles_size_Z\n");
+	fprintf(stdout,"\t	Components_nb\n");
+	fprintf(stdout,"\t	Layers_nb\n");
+	fprintf(stdout,"\t	Decomposition_levels\n");
+	fprintf(stdout,"\t	[Precincts_size_X_res_Nr Precincts_size_Y_res_Nr Precincts_size_Z_res_Nr]\n\t  ...\n");
+	fprintf(stdout,"\t	[Precincts_size_X_res_0 Precincts_size_Y_res_0 Precincts_size_Z_res_0]\n");
+	fprintf(stdout,"\t	Main_header_end_position\n");
+	fprintf(stdout,"\t	Codestream_size\n");
+	fprintf(stdout,"\t	Tile_0 [start_pos end_header end_pos TotalDisto NumPix MaxMSE]\n");
+	fprintf(stdout,"\t	...\n");
+	fprintf(stdout,"\t	Tile_Nt [  ''         ''        ''        ''       ''    ''  ]\n");
+	fprintf(stdout,"\t  Tpacket_0 [Tile layer res. comp. prec. start_pos end_pos disto]\n");
+	fprintf(stdout,"\t  ...\n");
+	fprintf(stdout,"\t  Tpacket_Np [''   ''    ''   ''    ''       ''       ''     '' ]\n");
+	fprintf(stdout,"\t  MaxDisto\n");
+	fprintf(stdout,"\t  TotalDisto\n\n");
+	fprintf(stdout,"\n");
+
+}
+
+OPJ_PROG_ORDER give_progression(char progression[4]) {
+	if(strncmp(progression, "LRCP", 4) == 0) {
+		return LRCP;
+	}
+	if(strncmp(progression, "RLCP", 4) == 0) {
+		return RLCP;
+	}
+	if(strncmp(progression, "RPCL", 4) == 0) {
+		return RPCL;
+	}
+	if(strncmp(progression, "PCRL", 4) == 0) {
+		return PCRL;
+	}
+	if(strncmp(progression, "CPRL", 4) == 0) {
+		return CPRL;
+	}
+
+	return PROG_UNKNOWN;
+}
+
+OPJ_TRANSFORM give_transform(char transform[4]) {
+	if(strncmp(transform, "2DWT", 4) == 0) {
+		return TRF_2D_DWT;
+	}
+	if(strncmp(transform, "3DWT", 4) == 0) {
+		return TRF_3D_DWT;
+	}
+	return TRF_UNKNOWN;
+}
+
+OPJ_ENTROPY_CODING give_coding(char coding[3]) {
+
+	if(strncmp(coding, "2EB", 3) == 0) {
+		return ENCOD_2EB;
+	}
+	if(strncmp(coding, "3EB", 3) == 0) {
+		return ENCOD_3EB;
+	}
+	/*if(strncmp(coding, "2GR", 3) == 0) {
+		return ENCOD_2GR;
+	}
+	if(strncmp(coding, "3GR", 3) == 0) {
+		return ENCOD_3GR;
+	}*/
+
+	return ENCOD_UNKNOWN;
+}
+
+int get_file_format(char *filename) {
+	int i;
+	static const char *extension[] = {"pgx", "bin", "img", "j3d", "jp3d", "j2k"};
+	static const int format[] = { PGX_DFMT, BIN_DFMT, IMG_DFMT, J3D_CFMT, J3D_CFMT, J2K_CFMT};
+	char * ext = strrchr(filename, '.');
+	if (ext) {
+		ext++;
+        for(i = 0; i < sizeof(format)/sizeof(*format); i++) {
+			if(strnicmp(ext, extension[i], 3) == 0) {
+                return format[i];
+			}
+		}
+	}
+
+	return -1;
+}
+
+/* ------------------------------------------------------------------------------------ */
+
+int parse_cmdline_encoder(int argc, char **argv, opj_cparameters_t *parameters) {
+	int i, value;
+
+	/* parse the command line */
+
+	while (1) {
+		int c = opj_getopt(argc, argv, "i:m:o:r:q:f:t:n:c:b:x:p:s:d:hP:S:E:M:D:R:l:T:C:A:I");
+		if (c == -1)
+			break;
+		switch (c) {
+			case 'i':			/* input file */
+			{
+				char *infile = opj_optarg;
+				parameters->decod_format = get_file_format(infile);
+				switch(parameters->decod_format) {
+					case PGX_DFMT:
+					case BIN_DFMT:
+					case IMG_DFMT:
+						break;
+					default:
+						fprintf(stdout,	"[ERROR] Unrecognized format for infile : %s [accept only *.pgx or *.bin] !!\n\n", infile);
+						return 1;
+						break;
+				}
+				strncpy(parameters->infile, infile, MAX_PATH);
+				fprintf(stdout,	"[INFO] Infile: %s \n", parameters->infile);
+
+			}
+			break;
+				
+				/* ----------------------------------------------------- */
+			case 'm':			/* input IMG file */
+			{
+				char *imgfile = opj_optarg;
+				int imgformat = get_file_format(imgfile);
+				switch(imgformat) {
+					case IMG_DFMT:
+						break;
+					default:
+						fprintf(stdout,	"[ERROR] Unrecognized format for imgfile : %s [accept only *.img] !!\n\n", imgfile);
+						return 1;
+						break;
+				}
+				strncpy(parameters->imgfile, imgfile, MAX_PATH);
+				fprintf(stdout,	"[INFO] Imgfile: %s Format: %d\n", parameters->imgfile, imgformat);
+			}
+			break;
+				
+				/* ----------------------------------------------------- */
+			case 'o':			/* output file */
+			{
+				char *outfile = opj_optarg;
+				parameters->cod_format = get_file_format(outfile);
+				switch(parameters->cod_format) {
+					case J3D_CFMT:
+					case J2K_CFMT:
+					case LSE_CFMT:
+						break;
+					default:
+						fprintf(stdout, "[ERROR] Unknown output format volume %s [only *.j2k, *.lse3d or *.jp3d]!! \n", outfile);
+						return 1;
+						break;
+				}
+				strncpy(parameters->outfile, outfile, MAX_PATH);
+				fprintf(stdout,	"[INFO] Outfile: %s \n", parameters->outfile);
+			}
+			break;
+
+				/* ----------------------------------------------------- */
+			
+			case 'r':			/* define compression rates for each layer */
+			{
+				char *s = opj_optarg;
+				while (sscanf(s, "%f", &parameters->tcp_rates[parameters->tcp_numlayers]) == 1) {
+					parameters->tcp_numlayers++;
+					while (*s && *s != ',') {
+						s++;
+					}
+					if (!*s)
+						break;
+					s++;
+				}
+				parameters->cp_disto_alloc = 1;
+			}
+			break;
+				
+				/* ----------------------------------------------------- */
+			
+			case 'q':			/* define distorsion (PSNR) for each layer */
+			{
+				char *s = opj_optarg;
+				while (sscanf(s, "%f", &parameters->tcp_distoratio[parameters->tcp_numlayers]) == 1) {
+					parameters->tcp_numlayers++;
+					while (*s && *s != ',') {
+						s++;
+					}
+					if (!*s)
+						break;
+					s++;
+				}
+				parameters->cp_fixed_quality = 1;
+			}
+			break;
+				
+				/* ----------------------------------------------------- */
+
+			case 'f':	
+			{
+				fprintf(stdout, "/---------------------------------------------------\\\n");
+				fprintf(stdout, "|  Fixed layer allocation option not implemented !!  |\n");
+				fprintf(stdout, "\\---------------------------------------------------/\n");
+				/*int *row = NULL, *col = NULL;
+				int numlayers = 0, matrix_width = 0;
+
+				char *s = opj_optarg;
+				sscanf(s, "%d", &numlayers);
+				s++;
+				if (numlayers > 9)
+					s++;
+
+				parameters->tcp_numlayers = numlayers;
+				matrix_width = parameters->numresolution[0] + parameters->numresolution[1] + parameters->numresolution[2];
+				parameters->cp_matrice = (int *) malloc(numlayers * matrix_width * sizeof(int));
+				s = s + 2;
+
+				for (i = 0; i < numlayers; i++) {
+					row = &parameters->cp_matrice[i * matrix_width];
+					col = row;
+					parameters->tcp_rates[i] = 1;
+					sscanf(s, "%d,", &col[0]);
+					s += 2;
+					if (col[0] > 9)
+						s++;
+					col[1] = 0;
+					col[2] = 0;
+					for (j = 1; j < matrix_width; j++) {
+						col += 3; j+=2;
+						sscanf(s, "%d,%d,%d", &col[0], &col[1], &col[2]);
+						s += 6;
+						if (col[0] > 9)
+							s++;
+						if (col[1] > 9)
+							s++;
+						if (col[2] > 9)
+							s++;
+					}
+					if (i < numlayers - 1)
+						s++;
+				}
+				parameters->cp_fixed_alloc = 1; */
+			}
+			break;
+				
+				/* ----------------------------------------------------- */
+
+			case 't':			/* tiles */
+			{
+				if (sscanf(opj_optarg, "%d,%d,%d", &parameters->cp_tdx, &parameters->cp_tdy, &parameters->cp_tdz) !=3) {
+					fprintf(stdout,	"[ERROR] '-t' 'dimensions of tiles' argument error !  [-t tdx,tdy,tdz]\n");
+					return 1;
+				}
+				parameters->tile_size_on = true;
+			}
+			break;
+				
+				/* ----------------------------------------------------- */
+			
+			case 'n':			/* resolution */
+			{
+				int aux;
+				aux = sscanf(opj_optarg, "%d,%d,%d", &parameters->numresolution[0], &parameters->numresolution[1], &parameters->numresolution[2]);
+				if (aux == 2) 
+					parameters->numresolution[2] = 1;
+				else if (aux == 1) {
+					parameters->numresolution[1] = parameters->numresolution[0];
+					parameters->numresolution[2] = 1;
+				}else if (aux == 0){
+					parameters->numresolution[0] = 1;
+					parameters->numresolution[1] = 1;
+					parameters->numresolution[2] = 1;
+				}
+			}
+			break;
+				
+				/* ----------------------------------------------------- */
+			case 'c':			/* precinct dimension */
+			{
+				char sep;
+				int res_spec = 0;
+				int aux;
+				char *s = opj_optarg;
+				do {
+					sep = 0;
+					aux = sscanf(s, "[%d,%d,%d]%c", &parameters->prct_init[0][res_spec], &parameters->prct_init[1][res_spec], &parameters->prct_init[2][res_spec], &sep);
+					if (sep == ',' && aux != 4) {
+						fprintf(stdout,	"[ERROR] '-c' 'dimensions of precincts' argument error !  [-c [prcx_res0,prcy_res0,prcz_res0],...,[prcx_resN,prcy_resN,prcz_resN]]\n");
+						return 1;
+					}
+					parameters->csty |= 0x01;
+					res_spec++;
+					s = strpbrk(s, "]") + 2;
+				}
+				while (sep == ',');
+				parameters->res_spec = res_spec; /* number of precinct size specifications */
+			}
+			break;
+				
+				/* ----------------------------------------------------- */
+			
+			case 'b':			/* code-block dimension */
+			{
+				int cblockw_init = 0, cblockh_init = 0, cblockl_init = 0;
+				if (sscanf(opj_optarg, "%d,%d,%d", &cblockw_init, &cblockh_init, &cblockl_init) != 3) {
+					fprintf(stdout,	"[ERROR] '-b' 'dimensions of codeblocks' argument error !  [-b cblkx,cblky,cblkz]\n");
+					return 1;
+				}
+				if (cblockw_init * cblockh_init * cblockl_init > (1<<18) || cblockw_init > 1024 || cblockw_init < 4 || cblockh_init > 1024 || cblockh_init < 4 || cblockl_init > 1024 || cblockl_init < 4) {
+					fprintf(stdout,"[ERROR] Size of code_block error (option -b) !!\n\nRestriction :\n * width*height*length<=4096\n * 4<=width,height,length<= 1024\n\n");
+					return 1;
+				}
+				parameters->cblock_init[0] = cblockw_init;
+				parameters->cblock_init[1] = cblockh_init;
+				parameters->cblock_init[2] = cblockl_init;
+			}
+			break;
+				
+				/* ----------------------------------------------------- */
+			
+			case 'x':			/* creation of index file */
+			{
+				char *index = opj_optarg;
+				strncpy(parameters->index, index, MAX_PATH);
+				parameters->index_on = 1;
+			}
+			break;
+				
+				/* ----------------------------------------------------- */
+			
+			case 'p':			/* progression order */
+			{
+				char progression[4];
+
+				strncpy(progression, opj_optarg, 4);
+				parameters->prog_order = give_progression(progression);
+				if (parameters->prog_order == -1) {
+					fprintf(stdout, "[ERROR] Unrecognized progression order [LRCP, RLCP, RPCL, PCRL, CPRL] !!\n");
+					return 1;
+				}
+			}
+			break;
+				
+				/* ----------------------------------------------------- */
+			
+			case 's':			/* subsampling factor */
+			{
+				if (sscanf(opj_optarg, "%d,%d,%d", &parameters->subsampling_dx, &parameters->subsampling_dy, &parameters->subsampling_dz) != 3) {
+					fprintf(stdout,	"[ERROR] '-s' sub-sampling argument error !  [-s dx,dy,dz]\n");
+					return 1;
+				}
+			}
+			break;
+				
+				/* ----------------------------------------------------- */
+			
+			case 'd':			/* coordonnate of the reference grid */
+			{
+				if (sscanf(opj_optarg, "%d,%d,%d", &parameters->volume_offset_x0, &parameters->volume_offset_y0, &parameters->volume_offset_z0) != 3) {
+					fprintf(stdout,	"[ERROR] -d 'coordonnate of the reference grid' argument error !! [-d x0,y0,z0]\n");
+					return 1;
+				}
+			}
+			break;
+				
+				/* ----------------------------------------------------- */
+			
+			case 'h':			/* display an help description */
+			{
+				encode_help_display();
+				return 1;
+			}
+			break;
+				
+				/* ----------------------------------------------------- */
+
+			case 'P':			/* POC */
+			{
+				int numpocs = 0;		/* number of progression order change (POC) default 0 */
+				opj_poc_t *POC = NULL;	/* POC : used in case of Progression order change */
+
+				char *s = opj_optarg;
+				POC = parameters->POC;
+
+				fprintf(stdout, "/----------------------------------\\\n");
+				fprintf(stdout, "|  POC option not fully tested !!  |\n");
+				fprintf(stdout, "\\----------------------------------/\n");
+				
+				while (sscanf(s, "T%d=%d,%d,%d,%d,%d,%s", &POC[numpocs].tile,
+														&POC[numpocs].resno0, &POC[numpocs].compno0,
+														&POC[numpocs].layno1, &POC[numpocs].resno1,
+														&POC[numpocs].compno1, POC[numpocs].progorder) == 7) {
+					POC[numpocs].prg = give_progression(POC[numpocs].progorder);
+					/* POC[numpocs].tile; */
+					numpocs++;
+					while (*s && *s != '/') {
+						s++;
+					}
+					if (!*s) {
+						break;
+					}
+					s++;
+				}
+				parameters->numpocs = numpocs;
+			}
+			break;
+				
+				/* ------------------------------------------------------ */
+				
+			case 'S':			/* SOP marker */
+			{
+				parameters->csty |= 0x02;
+			}
+			break;
+				
+				/* ------------------------------------------------------ */
+			
+			case 'E':			/* EPH marker */
+			{
+				parameters->csty |= 0x04;
+			}
+			break;
+				
+				/* ------------------------------------------------------ */
+			
+			case 'M':			/* Codification mode switch */
+			{
+				fprintf(stdout, "[INFO] Mode switch option not fully tested !!\n");
+				value = 0;
+				if (sscanf(opj_optarg, "%d", &value) == 1) {
+					for (i = 0; i <= 6; i++) {
+						int cache = value & (1 << i);
+						if (cache)
+							parameters->mode |= (1 << i);
+					}
+				}
+			}
+			break;
+				
+				/* ------------------------------------------------------ */
+			
+			case 'D':			/* DCO */
+			{
+				if (sscanf(opj_optarg, "%d", &parameters->dcoffset) != 1) {
+					fprintf(stdout, "[ERROR] DC offset error !! [-D %d]\n",parameters->dcoffset);
+					return 1;
+				}
+			}
+			break;
+				
+				/* ------------------------------------------------------ */
+			
+			case 'R':			/* ROI */
+			{
+				if (sscanf(opj_optarg, "OI:c=%d,U=%d", &parameters->roi_compno, &parameters->roi_shift) != 2) {
+					fprintf(stdout, "[ERROR] ROI error !! [-ROI:c='compno',U='shift']\n");
+					return 1;
+				}
+			}
+			break;
+				
+				/* ------------------------------------------------------ */
+			
+			case 'l':			/* Tile offset */
+			{
+				if (sscanf(opj_optarg, "%d,%d,%d", &parameters->cp_tx0, &parameters->cp_ty0, &parameters->cp_tz0) != 3) {
+					fprintf(stdout, "[ERROR] -l 'tile offset' argument error !! [-l X0,Y0,Z0]");
+					return 1;
+				}
+			}
+			break;
+				
+				/* ------------------------------------------------------ 
+				
+			case 'T':			// Tranformation of original data (2D-DWT/3D-DWT/3D-RLS/2D-DWT+1D-RLS) 
+			{
+				char transform[4];
+
+				strncpy(transform, opj_optarg, 4);
+				parameters->transform_format = give_transform(transform);
+				if (parameters->transform_format == -1) {
+					fprintf(stdout, "[ERROR] -T 'Transform domain' argument error !! [-T 2DWT, 3DWT, 3RLS or 3LSE only]");
+                    return 1;
+				}
+			}
+			break;
+				
+				 ------------------------------------------------------ */
+			
+			case 'C':			/* Coding of transformed data */
+			{
+				char coding[3];
+
+				strncpy(coding, opj_optarg, 3);
+				parameters->encoding_format = give_coding(coding);
+				if (parameters->encoding_format == -1) {
+					fprintf(stdout, "[ERROR] -C 'Coding algorithm' argument error !! [-C 2EB, 3EB, 2GR, 3GR or GRI only]");
+                    return 1;
+				}
+			}
+			break;
+			
+			/* ------------------------------------------------------ */
+			
+			case 'I':			/* reversible or not */
+			{
+				parameters->irreversible = 1;
+			}
+			break;
+				
+			default:
+				fprintf(stdout, "[ERROR] This option is not valid \"-%c %s\"\n", c, opj_optarg);
+				return 1;
+		}
+	}
+
+	/* check for possible errors */
+
+	if((parameters->infile[0] == 0) || (parameters->outfile[0] == 0)) {
+		fprintf(stdout, "usage: jp3d_vm_enc -i volume-file -o jp3d-file (+ options)\n");
+		return 1;
+	}
+
+	if((parameters->decod_format == BIN_DFMT) && (parameters->imgfile[0] == 0)) {
+		fprintf(stdout, "usage: jp3d_vm_enc -i bin-volume-file -m img-file -o jp3d-file (+ options)\n");
+		return 1;
+	}
+
+	if((parameters->decod_format != BIN_DFMT) && (parameters->decod_format != PGX_DFMT) && (parameters->decod_format != IMG_DFMT)) {
+		fprintf(stdout, "usage: jp3d_vm_enc -i input-volume-file [*.bin,*.pgx,*.img] -o jp3d-file [*.jp3d,*.j2k] (+ options)\n");
+		return 1;
+	}
+	if((parameters->cod_format != J3D_CFMT) && (parameters->cod_format != J2K_CFMT)) {
+		fprintf(stdout, "usage: jp3d_vm_enc -i input-volume-file [*.bin,*.pgx,*.img] -o jp3d-file [*.jp3d,*.j2k] (+ options)\n");
+		return 1;
+	}
+
+	if((parameters->encoding_format == ENCOD_2GR || parameters->encoding_format == ENCOD_3GR) && parameters->transform_format != TRF_3D_LSE && parameters->transform_format != TRF_3D_RLS) {
+		fprintf(stdout, "[ERROR] Entropy coding options -C [2GR,3GR] are only compatible with predictive-based transform algorithms: -T [3RLS,3LSE].\n");
+		return 1;
+	}
+	if (parameters->encoding_format == ENCOD_3EB)
+		parameters->mode |= (1 << 6);
+
+	if ((parameters->mode >> 6) & 1) {
+		parameters->encoding_format = ENCOD_3EB;
+	}
+
+	if((parameters->numresolution[2] == 0 || (parameters->numresolution[1] == 0) || (parameters->numresolution[0] == 0))) {
+		fprintf(stdout, "[ERROR] -n 'resolution levels' argument error ! Resolutions must be greater than 1 in order to perform DWT.\n");
+		return 1;
+	}
+	if (parameters->numresolution[1] != parameters->numresolution[0]) {
+		fprintf(stdout, "[ERROR] -n 'resolution levels' argument error ! Resolutions in X and Y axis must be the same in this implementation.\n");
+		return 1;
+	}
+	
+	if (parameters->numresolution[2] > parameters->numresolution[0]) {
+		fprintf(stdout, "[ERROR] -n 'resolution levels' argument error ! Resolutions in Z axis must be lower than in X-Y axis.\n");
+		return 1;
+	}
+	
+	if (parameters->dcoffset >= 128 && parameters->dcoffset <= -128) {
+		fprintf(stdout, "[ERROR] -D 'DC offset' argument error ! Value must be -128<=DCO<=128.\n");
+		return 1;
+	}
+
+	if(parameters->numresolution[2] != 1) {
+		parameters->transform_format = TRF_3D_DWT;
+		/*fprintf(stdout, "[Warning] Resolution level in axial dim > 1 : 3D-DWT will be performed... \n");*/
+	} else if (parameters->numresolution[2] == 1) {
+		parameters->transform_format = TRF_2D_DWT;
+		/*fprintf(stdout, "[Warning] Resolution level in axial dim == 1 : 2D-DWT will be performed... \n");*/
+	}
+	
+	if ((parameters->cod_format == J2K_CFMT) && (parameters->transform_format != TRF_2D_DWT || parameters->encoding_format != ENCOD_2EB)) {
+		fprintf(stdout, "[WARNING] Incompatible options -o *.j2k and defined transform or encoding algorithm. Latter will be ignored\n");
+		parameters->transform_format = TRF_2D_DWT;
+		parameters->encoding_format = ENCOD_2EB;
+	}
+
+	if ((parameters->cp_disto_alloc || parameters->cp_fixed_alloc || parameters->cp_fixed_quality) && (!(parameters->cp_disto_alloc ^ parameters->cp_fixed_quality))) {
+		fprintf(stdout, "[ERROR] Options -r and -q cannot be used together !!\n");
+		return 1;
+	}				/* mod fixed_quality */
+
+	/* if no rate entered, lossless by default */
+	if (parameters->tcp_numlayers == 0) {
+		parameters->tcp_rates[0] = 0.0;	/* MOD antonin : losslessbug */
+		parameters->tcp_numlayers++;
+		parameters->cp_disto_alloc = 1;
+	}
+
+	if((parameters->cp_tx0 > parameters->volume_offset_x0) || (parameters->cp_ty0 > parameters->volume_offset_y0) || (parameters->cp_tz0 > parameters->volume_offset_z0)) {
+		fprintf(stdout,	"[ERROR] Tile offset dimension is unnappropriate --> TX0(%d)<=IMG_X0(%d) TYO(%d)<=IMG_Y0(%d) TZO(%d)<=IMG_Z0(%d)\n",
+			parameters->cp_tx0, parameters->volume_offset_x0, parameters->cp_ty0, parameters->volume_offset_y0, 
+			parameters->cp_tz0, parameters->volume_offset_z0);
+		return 1;
+	}
+
+	for (i = 0; i < parameters->numpocs; i++) {
+		if (parameters->POC[i].prg == -1) {
+			fprintf(stdout,"[ERROR] Unrecognized progression order in option -P (POC n %d) [LRCP, RLCP, RPCL, PCRL, CPRL] !!\n",i + 1);
+		}
+	}
+	return 0;
+}
+
+/* -------------------------------------------------------------------------- */
+
+/**
+sample error callback expecting a FILE* client object
+*/
+void error_callback(const char *msg, void *client_data) {
+	FILE *stream = (FILE*)client_data;
+	fprintf(stream, "[ERROR] %s", msg);
+}
+/**
+sample warning callback expecting a FILE* client object
+*/
+void warning_callback(const char *msg, void *client_data) {
+	FILE *stream = (FILE*)client_data;
+	fprintf(stream, "[WARNING] %s", msg);
+}
+/**
+sample debug callback expecting a FILE* client object
+*/
+void info_callback(const char *msg, void *client_data) {
+	FILE *stream = (FILE*)client_data;
+	fprintf(stream, "[INFO] %s", msg);
+}
+
+/* -------------------------------------------------------------------------- */
+
+int main(int argc, char **argv) {
+	bool bSuccess;
+	bool delete_comment = true;
+	opj_cparameters_t parameters;	/* compression parameters */
+	opj_event_mgr_t event_mgr;		/* event manager */
+	opj_volume_t *volume = NULL;
+
+	/* 
+	configure the event callbacks (not required)
+	setting of each callback is optionnal 
+	*/
+	memset(&event_mgr, 0, sizeof(opj_event_mgr_t));
+	event_mgr.error_handler = error_callback;
+	event_mgr.warning_handler = warning_callback;
+	event_mgr.info_handler = info_callback;
+
+	/* set encoding parameters to default values */
+	opj_set_default_encoder_parameters(&parameters);
+
+	/* parse input and get user encoding parameters */
+	if(parse_cmdline_encoder(argc, argv, &parameters) == 1) {
+		return 0;
+	}
+
+	if(parameters.cp_comment == NULL) {
+		parameters.cp_comment = "Created by OpenJPEG version JP3D";
+		/* no need to delete parameters.cp_comment on exit */
+		delete_comment = false;
+	}
+	
+	/* encode the destination volume */
+	/* ---------------------------- */
+	if (parameters.cod_format == J3D_CFMT || parameters.cod_format == J2K_CFMT)	{
+		int codestream_length, pixels, bitsin;
+		opj_cio_t *cio = NULL;
+		FILE *f = NULL;
+		opj_cinfo_t* cinfo = NULL;
+		
+		/* decode the source volume */
+		/* ----------------------- */
+		switch (parameters.decod_format) {
+			case PGX_DFMT: 
+				fprintf(stdout, "[INFO] Loading pgx file(s)\n");
+				volume = pgxtovolume(parameters.infile, &parameters);
+				if (!volume) {
+					fprintf(stdout, "[ERROR] Unable to load pgx files\n");
+					return 1;
+				}
+				break;
+			
+			case BIN_DFMT:
+				fprintf(stdout, "[INFO] Loading bin file\n");
+				volume = bintovolume(parameters.infile, parameters.imgfile, &parameters);
+				if (!volume) {
+					fprintf(stdout, "[ERROR] Unable to load bin file\n");
+					return 1;
+				}
+				break;
+
+			case IMG_DFMT:
+				fprintf(stdout, "[INFO] Loading img file\n");
+				volume = imgtovolume(parameters.infile, &parameters);
+				if (!volume) {
+					fprintf(stderr, "[ERROR] Unable to load img file\n");
+					return 1;
+				}
+				break;
+		}
+		
+		/* get a JP3D or J2K compressor handle */
+		if (parameters.cod_format == J3D_CFMT) 
+            cinfo = opj_create_compress(CODEC_J3D);
+		else if (parameters.cod_format == J2K_CFMT) 
+            cinfo = opj_create_compress(CODEC_J2K);
+
+		/* catch events using our callbacks and give a local context */
+		opj_set_event_mgr((opj_common_ptr)cinfo, &event_mgr, stdout);			
+
+		/* setup the encoder parameters using the current volume and using user parameters */
+		opj_setup_encoder(cinfo, &parameters, volume);
+		
+		/* open a byte stream for writing */
+		/* allocate memory for all tiles */
+		cio = opj_cio_open((opj_common_ptr)cinfo, NULL, 0);
+
+		/* encode the volume */
+		/*fprintf(stdout, "[INFO] Encode the volume\n");*/
+		bSuccess = opj_encode(cinfo, cio, volume, parameters.index);
+		if (!bSuccess) {
+			opj_cio_close(cio);
+			fprintf(stdout, "[ERROR] Failed to encode volume\n");
+			return 1;
+		}
+		codestream_length = cio_tell(cio);
+		pixels =(volume->x1 - volume->x0) * (volume->y1 - volume->y0) * (volume->z1 - volume->z0);
+		bitsin = pixels * volume->comps[0].prec;
+		fprintf(stdout, "[RESULT] Volume: %d x %d x %d (x %d bpv)\n Codestream: %d B,  Ratio: %5.3f bpv,  (%5.3f : 1) \n", 
+			(volume->x1 - volume->x0),(volume->y1 - volume->y0),(volume->z1 - volume->z0),volume->comps[0].prec,
+			codestream_length, ((double)codestream_length * 8.0/(double)pixels), ((double)bitsin/(8.0*(double)codestream_length)));
+
+		/* write the buffer to disk */
+		f = fopen(parameters.outfile, "wb");
+		if (!f) {
+			fprintf(stdout, "[ERROR] Failed to open %s for writing\n", parameters.outfile);
+			return 1;
+		}
+		fwrite(cio->buffer, 1, codestream_length, f);
+		fclose(f);
+
+		/* close and free the byte stream */
+		opj_cio_close(cio);
+
+		/* free remaining compression structures */
+		opj_destroy_compress(cinfo);
+	} else {
+		fprintf(stdout, "[ERROR] Cod_format != JP3d !!! \n");
+		return 1;
+	}
+
+	/* free user parameters structure */
+	if(delete_comment) {
+		if(parameters.cp_comment) free(parameters.cp_comment);
+	}
+	if(parameters.cp_matrice) free(parameters.cp_matrice);
+
+	/* free volume data */
+	opj_volume_destroy(volume);
+	
+	return 0;
+}

src/bin/jp3d/opj_jp3d_decompress.c

@@ -0,0 +1,542 @@
+/*
+ * Copyright (c) 2001-2003, David Janssens
+ * Copyright (c) 2002-2003, Yannick Verschueren
+ * Copyright (c) 2003-2005, Francois Devaux and Antonin Descampe
+ * Copyright (c) 2005, Herve Drolon, FreeImage Team
+ * Copyright (c) 2002-2005, Communications and remote sensing Laboratory, Universite catholique de Louvain, Belgium
+ * Copyright (c) 2006, M<>nica D<>ez Garc<72>a, Image Processing Laboratory, University of Valladolid, Spain
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions
+ * are met:
+ * 1. Redistributions of source code must retain the above copyright
+ *    notice, this list of conditions and the following disclaimer.
+ * 2. Redistributions in binary form must reproduce the above copyright
+ *    notice, this list of conditions and the following disclaimer in the
+ *    documentation and/or other materials provided with the distribution.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS `AS IS'
+ * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED.  IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
+ * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+ * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+ * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+ * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+ * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+ * POSSIBILITY OF SUCH DAMAGE.
+ */
+#include <stdio.h>
+#include <string.h>
+#include <stdlib.h>
+#include <math.h>
+
+#include "opj_config.h"
+#include "openjp3d.h"
+#include "opj_getopt.h"
+#include "convert.h"
+
+#ifdef _WIN32
+#include <windows.h>
+#else
+#define stricmp strcasecmp
+#define strnicmp strncasecmp
+#endif /* _WIN32 */
+
+/* ----------------------------------------------------------------------- */
+static double calc_PSNR(opj_volume_t *original, opj_volume_t *decoded)
+{
+	int max, i, k, compno = 0, size;
+	double sum, total = 0;
+	int global = 1;
+    
+	max = (original->comps[compno].prec <= 8) ? 255 : (1 << original->comps[compno].prec) - 1;
+	if (global) {
+		size = (original->x1 - original->x0) * (original->y1 - original->y0) * (original->z1 - original->z0);
+
+		for (compno = 0; compno < original->numcomps; compno++) {
+			for(sum = 0, i = 0; i < size; ++i) {
+				if ((decoded->comps[compno].data[i] < 0) || (decoded->comps[compno].data[i] > max))
+					fprintf(stdout,"[WARNING] Data out of range during PSNR computing...\n");
+				else
+					sum += (original->comps[compno].data[i] - decoded->comps[compno].data[i]) * (original->comps[compno].data[i] - decoded->comps[compno].data[i]);        
+			}
+		}
+		sum /= size;
+		total = ((sum==0.0) ? 0.0 : 10 * log10(max * max / sum));
+	} else {
+		size = (original->x1 - original->x0) * (original->y1 - original->y0);
+
+		for (k = 0; k < original->z1 - original->z0; k++) {
+			int offset = k * size;
+			for (sum = 0, compno = 0; compno < original->numcomps; compno++) {
+				for(i = 0; i < size; ++i) {
+					if ((decoded->comps[compno].data[i + offset] < 0) || (decoded->comps[compno].data[i + offset] > max))
+						fprintf(stdout,"[WARNING] Data out of range during PSNR computing...\n");
+					else
+						sum += (original->comps[compno].data[i + offset] - decoded->comps[compno].data[i + offset]) * (original->comps[compno].data[i + offset] - decoded->comps[compno].data[i + offset]);        
+				}
+			}
+			sum /= size;
+			total = total + ((sum==0.0) ? 0.0 : 10 * log10(max * max / sum));
+		}
+
+	}
+	if(total == 0) /* perfect reconstruction, PSNR should return infinity */
+		return -1.0;
+	
+	return total;
+	/*return 20 * log10((max - 1) / sqrt(sum));*/
+}
+
+static double calc_SSIM(opj_volume_t *original, opj_volume_t *decoded)
+{
+	int max, i, compno = 0, size, sizeM;
+	double sum;
+	double mux = 0.0, muy = 0.0, sigmax = 0.0, sigmay = 0.0,
+		sigmaxy = 0.0/*, structx = 0.0, structy = 0.0*/;
+	double lcomp,ccomp,scomp;
+	double C1,C2,C3;
+
+	max = (original->comps[compno].prec <= 8) ? 255 : (1 << original->comps[compno].prec) - 1;
+	size = (original->x1 - original->x0) * (original->y1 - original->y0) * (original->z1 - original->z0);
+
+	/*MSSIM*/
+
+/*	sizeM = size / (original->z1 - original->z0);*/
+
+	sizeM = size;	
+	for(sum = 0, i = 0; i < sizeM; ++i) {
+		/* First, the luminance of each signal is compared.*/
+		mux += original->comps[compno].data[i];
+		muy += decoded->comps[compno].data[i];
+	}
+	mux /= sizeM;
+	muy /= sizeM;
+	
+	/*We use the standard deviation (the square root of variance) as an estimate of the signal contrast.*/
+    for(sum = 0, i = 0; i < sizeM; ++i) {
+		/* First, the luminance of each signal is compared.*/
+		sigmax += (original->comps[compno].data[i] - mux) * (original->comps[compno].data[i] - mux);
+		sigmay += (decoded->comps[compno].data[i] - muy) * (decoded->comps[compno].data[i] - muy);
+		sigmaxy += (original->comps[compno].data[i] - mux) * (decoded->comps[compno].data[i] - muy);
+	}
+	sigmax /= sizeM - 1;
+	sigmay /= sizeM - 1;
+	sigmaxy /= sizeM - 1;
+	
+	sigmax = sqrt(sigmax);
+	sigmay = sqrt(sigmay);
+	sigmaxy = sqrt(sigmaxy);
+
+	/*Third, the signal is normalized (divided) by its own standard deviation, */
+	/*so that the two signals being compared have unit standard deviation.*/
+
+	/*Luminance comparison*/
+	C1 = (0.01 * max) * (0.01 * max);
+	lcomp = ((2 * mux * muy) + C1)/((mux*mux) + (muy*mux) + C1);
+	/*Constrast comparison*/
+	C2 = (0.03 * max) * (0.03 * max);
+	ccomp = ((2 * sigmax * sigmay) + C2)/((sigmax*sigmax) + (sigmay*sigmay) + C2);
+	/*Structure comparison*/
+	C3 = C2 / 2;
+	scomp = (sigmaxy + C3) / (sigmax * sigmay + C3);
+	/*Similarity measure*/
+
+	sum = lcomp * ccomp * scomp;
+	return sum;
+}
+
+void decode_help_display() {
+	fprintf(stdout,"HELP\n----\n\n");
+	fprintf(stdout,"- the -h option displays this help information on screen\n\n");
+
+	fprintf(stdout,"List of parameters for the JPEG 2000 encoder:\n");
+	fprintf(stdout,"\n");
+	fprintf(stdout," Required arguments \n");
+	fprintf(stdout," ---------------------------- \n");
+	fprintf(stdout,"  -i <compressed file> ( *.jp3d, *.j3d )\n");
+	fprintf(stdout,"    Currently accepts J3D-files. The file type is identified based on its suffix.\n");
+	fprintf(stdout,"  -o <decompressed file> ( *.pgx, *.bin )\n");
+	fprintf(stdout,"    Currently accepts PGX-files and BIN-files. Binary data is written to the file (not ascii). \n");
+	fprintf(stdout,"    If a PGX filename is given, there will be as many output files as slices; \n");
+	fprintf(stdout,"    an indice starting from 0 will then be appended to the output filename,\n");
+	fprintf(stdout,"    just before the \"pgx\" extension.\n");
+	fprintf(stdout,"  -m <characteristics file> ( *.img ) \n");
+	fprintf(stdout,"    Required only for BIN-files. Ascii data of volume characteristics is written. \n");
+	fprintf(stdout,"\n");
+	fprintf(stdout," Optional  \n");
+	fprintf(stdout," ---------------------------- \n");
+	fprintf(stdout,"  -h \n ");
+	fprintf(stdout,"    Display the help information\n");
+	fprintf(stdout,"  -r <RFx,RFy,RFz>\n");
+	fprintf(stdout,"    Set the number of highest resolution levels to be discarded on each dimension. \n");
+	fprintf(stdout,"    The volume resolution is effectively divided by 2 to the power of the\n");
+	fprintf(stdout,"    number of discarded levels. The reduce factor is limited by the\n");
+	fprintf(stdout,"    smallest total number of decomposition levels among tiles.\n");
+	fprintf(stdout,"  -l <number of quality layers to decode>\n");
+	fprintf(stdout,"    Set the maximum number of quality layers to decode. If there are\n");
+	fprintf(stdout,"    less quality layers than the specified number, all the quality layers\n");
+	fprintf(stdout,"    are decoded. \n");
+	fprintf(stdout,"  -O original-file \n");
+    fprintf(stdout,"    This option offers the possibility to compute some quality results  \n");
+	fprintf(stdout,"    for the decompressed volume, like the PSNR value achieved or the global SSIM value.  \n");
+	fprintf(stdout,"    Needs the original file in order to compare with the new one.\n");
+    fprintf(stdout,"    NOTE: Only valid when -r option is 0,0,0 (both original and decompressed volumes have same resolutions) \n");
+    fprintf(stdout,"    NOTE: If original file is .BIN file, the volume characteristics file shall be defined with the -m option. \n");
+	fprintf(stdout,"    (i.e. -O original-BIN-file -m original-IMG-file) \n");
+	fprintf(stdout,"  -BE \n");
+	fprintf(stdout,"    Define that the recovered volume data will be saved with big endian byte order.\n");
+	fprintf(stdout,"    By default, little endian byte order is used.\n");
+	fprintf(stdout,"\n");
+}
+
+/* -------------------------------------------------------------------------- */
+
+int get_file_format(char *filename) {
+	int i;
+	static const char *extension[] = {"pgx", "bin", "j3d", "jp3d", "j2k", "img"};
+	static const int format[] = { PGX_DFMT, BIN_DFMT, J3D_CFMT, J3D_CFMT, J2K_CFMT, IMG_DFMT};
+	char * ext = strrchr(filename, '.');
+	if(ext) {
+		ext++;
+		for(i = 0; i < sizeof(format) / sizeof(format[0]); i++) {
+			if(strnicmp(ext, extension[i], 3) == 0) {
+				return format[i];
+			}
+		}
+	}
+
+	return -1;
+}
+
+/* -------------------------------------------------------------------------- */
+
+int parse_cmdline_decoder(int argc, char **argv, opj_dparameters_t *parameters) {
+	/* parse the command line */
+
+	while (1) {
+		int c = opj_getopt(argc, argv, "i:o:O:r:l:B:m:h");
+		if (c == -1)			  
+			break;
+		switch (c) {
+			case 'i':			/* input file */
+			{
+				char *infile = opj_optarg;
+				parameters->decod_format = get_file_format(infile);
+				switch(parameters->decod_format) {
+					case J3D_CFMT:
+					case J2K_CFMT:
+						break;
+					default:
+						fprintf(stdout, "[ERROR] Unknown format for infile %s [only *.j3d]!! \n", infile);
+						return 1;
+						break;
+				}
+				strncpy(parameters->infile, infile, MAX_PATH);
+				fprintf(stdout,	"[INFO] Infile: %s \n", parameters->infile);
+
+			}
+			break;
+
+			case 'm':			/* img file */
+			{
+				char *imgfile = opj_optarg;
+				int imgformat = get_file_format(imgfile);
+				switch(imgformat) {
+					case IMG_DFMT:
+						break;
+					default:
+						fprintf(stdout,	"[ERROR] Unrecognized format for imgfile : %s [accept only *.img] !!\n\n", imgfile);
+						return 1;
+						break;
+				}
+				strncpy(parameters->imgfile, imgfile, MAX_PATH);
+				fprintf(stdout,	"[INFO] Imgfile: %s Format: %d\n", parameters->imgfile, imgformat);
+			}
+			break;
+				
+				/* ----------------------------------------------------- */
+
+			case 'o':			/* output file */
+			{
+				char *outfile = opj_optarg;
+				parameters->cod_format = get_file_format(outfile);
+				switch(parameters->cod_format) {
+					case PGX_DFMT:
+					case BIN_DFMT:
+						break;
+					default:
+						fprintf(stdout,	"[ERROR] Unrecognized format for outfile : %s [accept only *.pgx or *.bin] !!\n\n", outfile);
+						return 1;
+						break;
+				}
+				strncpy(parameters->outfile, outfile, MAX_PATH);
+				fprintf(stdout,	"[INFO] Outfile: %s \n", parameters->outfile);
+
+			}
+			break;
+			
+				/* ----------------------------------------------------- */
+
+			case 'O':		/* Original image for PSNR computing */
+			{
+				char *original = opj_optarg;
+				parameters->orig_format = get_file_format(original);
+				switch(parameters->orig_format) {
+					case PGX_DFMT:
+					case BIN_DFMT:
+						break;
+					default:
+						fprintf(stdout,	"[ERROR] Unrecognized format for original file : %s [accept only *.pgx or *.bin] !!\n\n", original);
+						return 1;
+						break;
+				}
+				strncpy(parameters->original, original, MAX_PATH);
+				fprintf(stdout,	"[INFO] Original file: %s \n", parameters->original);
+			}
+			break;
+
+				/* ----------------------------------------------------- */
+	    
+			case 'r':		/* reduce option */
+			{
+				/*sscanf(opj_optarg, "%d, %d, %d", &parameters->cp_reduce[0], &parameters->cp_reduce[1], &parameters->cp_reduce[2]);*/
+				int aux;
+				aux = sscanf(opj_optarg, "%d,%d,%d", &parameters->cp_reduce[0], &parameters->cp_reduce[1], &parameters->cp_reduce[2]);
+				if (aux == 2) 
+					parameters->cp_reduce[2] = 0;
+				else if (aux == 1) {
+					parameters->cp_reduce[1] = parameters->cp_reduce[0];
+					parameters->cp_reduce[2] = 0;
+				}else if (aux == 0){
+					parameters->cp_reduce[0] = 0;
+					parameters->cp_reduce[1] = 0;
+					parameters->cp_reduce[2] = 0;
+				}
+			}
+			break;
+			
+				/* ----------------------------------------------------- */
+
+			case 'l':		/* layering option */
+			{
+				sscanf(opj_optarg, "%d", &parameters->cp_layer);
+			}
+			break;
+
+				/* ----------------------------------------------------- */
+
+			case 'B':		/* BIGENDIAN vs. LITTLEENDIAN */
+			{
+				parameters->bigendian = 1;
+			}
+			break;
+			
+				/* ----------------------------------------------------- */
+
+			case 'L':		/* BIGENDIAN vs. LITTLEENDIAN */
+			{
+				parameters->decod_format = LSE_CFMT;
+			}
+			break;
+			
+			/* ----------------------------------------------------- */
+			
+			case 'h': 			/* display an help description */
+			{
+				decode_help_display();
+				return 1;
+			}
+			break;
+            
+				/* ----------------------------------------------------- */
+			
+			default:
+				fprintf(stdout,"[WARNING] This option is not valid \"-%c %s\"\n",c, opj_optarg);
+				break;
+		}
+	}
+
+	/* check for possible errors */
+
+	if((parameters->infile[0] == 0) || (parameters->outfile[0] == 0)) {
+		fprintf(stdout,"[ERROR] At least one required argument is missing\n Check jp3d_to_volume -help for usage information\n");
+		return 1;
+	}
+
+	return 0;
+}
+
+/* -------------------------------------------------------------------------- */
+
+/**
+sample error callback expecting a FILE* client object
+*/
+void error_callback(const char *msg, void *client_data) {
+	FILE *stream = (FILE*)client_data;
+	fprintf(stream, "[ERROR] %s", msg);
+}
+/**
+sample warning callback expecting a FILE* client object
+*/
+void warning_callback(const char *msg, void *client_data) {
+	FILE *stream = (FILE*)client_data;
+	fprintf(stream, "[WARNING] %s", msg);
+}
+/**
+sample debug callback expecting no client object
+*/
+void info_callback(const char *msg, void *client_data) {
+	fprintf(stdout, "[INFO] %s", msg);
+}
+
+/* -------------------------------------------------------------------------- */
+
+int main(int argc, char **argv) {
+
+	opj_dparameters_t parameters;	/* decompression parameters */
+	opj_event_mgr_t event_mgr;		/* event manager */
+	opj_volume_t *volume = NULL;
+
+	opj_volume_t *original = NULL;
+	opj_cparameters_t cparameters;	/* original parameters */
+
+	FILE *fsrc = NULL;
+	unsigned char *src = NULL; 
+	int file_length;
+	int decodeok;
+	double psnr, ssim;
+
+	opj_dinfo_t* dinfo = NULL;	/* handle to a decompressor */
+	opj_cio_t *cio = NULL;
+
+	/* configure the event callbacks (not required) */
+	memset(&event_mgr, 0, sizeof(opj_event_mgr_t));
+	event_mgr.error_handler = error_callback;
+	event_mgr.warning_handler = warning_callback;
+	event_mgr.info_handler = info_callback;
+
+	/* set decoding parameters to default values */
+	opj_set_default_decoder_parameters(&parameters);
+
+    /* parse input and get user decoding parameters */
+	strcpy(parameters.original,"NULL");
+	strcpy(parameters.imgfile,"NULL");
+	if(parse_cmdline_decoder(argc, argv, &parameters) == 1) {
+		return 0;
+	}
+	
+	/* read the input file and put it in memory */
+	/* ---------------------------------------- */
+	fprintf(stdout, "[INFO] Loading %s file \n",parameters.decod_format==J3D_CFMT ? ".jp3d" : ".j2k");
+	fsrc = fopen(parameters.infile, "rb");
+	if (!fsrc) {
+		fprintf(stdout, "[ERROR] Failed to open %s for reading\n", parameters.infile);
+		return 1;
+	}  
+	fseek(fsrc, 0, SEEK_END);
+	file_length = ftell(fsrc);
+	fseek(fsrc, 0, SEEK_SET);
+	src = (unsigned char *) malloc(file_length);
+	fread(src, 1, file_length, fsrc);
+	fclose(fsrc);
+	
+	/* decode the code-stream */
+	/* ---------------------- */
+	if (parameters.decod_format == J3D_CFMT || parameters.decod_format == J2K_CFMT) {		
+		/* get a JP3D or J2K decoder handle */
+		if (parameters.decod_format == J3D_CFMT) 
+			dinfo = opj_create_decompress(CODEC_J3D);
+		else if (parameters.decod_format == J2K_CFMT) 
+			dinfo = opj_create_decompress(CODEC_J2K);
+
+		/* catch events using our callbacks and give a local context */
+		opj_set_event_mgr((opj_common_ptr)dinfo, &event_mgr, stderr);			
+
+		/* setup the decoder decoding parameters using user parameters */
+		opj_setup_decoder(dinfo, &parameters);
+
+		/* open a byte stream */
+		cio = opj_cio_open((opj_common_ptr)dinfo, src, file_length);
+
+		/* decode the stream and fill the volume structure */
+		volume = opj_decode(dinfo, cio);
+		if(!volume) {
+			fprintf(stdout, "[ERROR] jp3d_to_volume: failed to decode volume!\n");				
+			opj_destroy_decompress(dinfo);
+			opj_cio_close(cio);
+			return 1;
+		}	
+
+		/* close the byte stream */
+		opj_cio_close(cio);
+	}
+  
+	/* free the memory containing the code-stream */
+	free(src);
+	src = NULL;
+
+	/* create output volume */
+	/* ------------------- */
+
+	switch (parameters.cod_format) {
+		case PGX_DFMT:			/* PGX */
+			decodeok = volumetopgx(volume, parameters.outfile);
+			if (decodeok)
+				fprintf(stdout,"[ERROR] Unable to write decoded volume into pgx files\n");
+			break;
+		
+		case BIN_DFMT:			/* BMP */
+			decodeok = volumetobin(volume, parameters.outfile);
+			if (decodeok)
+				fprintf(stdout,"[ERROR] Unable to write decoded volume into pgx files\n");
+			break;
+	}
+	switch (parameters.orig_format) {
+		case PGX_DFMT:			/* PGX */
+			if (strcmp("NULL",parameters.original) != 0){
+ 				fprintf(stdout,"Loading original file %s \n",parameters.original);
+				cparameters.subsampling_dx = 1;	cparameters.subsampling_dy = 1;	cparameters.subsampling_dz = 1;
+				cparameters.volume_offset_x0 = 0;cparameters.volume_offset_y0 = 0;cparameters.volume_offset_z0 = 0;
+				original = pgxtovolume(parameters.original,&cparameters);
+			}
+			break;
+		
+		case BIN_DFMT:			/* BMP */
+			if (strcmp("NULL",parameters.original) != 0 && strcmp("NULL",parameters.imgfile) != 0){
+				fprintf(stdout,"Loading original file %s %s\n",parameters.original,parameters.imgfile);
+				cparameters.subsampling_dx = 1;	cparameters.subsampling_dy = 1;	cparameters.subsampling_dz = 1;
+				cparameters.volume_offset_x0 = 0;cparameters.volume_offset_y0 = 0;cparameters.volume_offset_z0 = 0;
+				original = bintovolume(parameters.original,parameters.imgfile,&cparameters);
+			}
+			break;
+	}
+
+	fprintf(stdout, "[RESULT] Volume: %d x %d x %d (x %d bpv)\n ", 
+			 (volume->comps[0].w >> volume->comps[0].factor[0]),
+			 (volume->comps[0].h >> volume->comps[0].factor[1]),
+			 (volume->comps[0].l >> volume->comps[0].factor[2]),
+        volume->comps[0].prec);
+
+	if(original){
+		psnr = calc_PSNR(original,volume);
+		ssim = calc_SSIM(original,volume);
+		if (psnr < 0.0)
+			fprintf(stdout, "  PSNR: Inf , SSMI %f -- Perfect reconstruction!\n",ssim);
+		else
+			fprintf(stdout, "  PSNR: %f , SSIM %f \n",psnr,ssim);
+	}
+	/* free remaining structures */
+	if(dinfo) {
+		opj_destroy_decompress(dinfo);
+	}
+
+	/* free volume data structure */
+	opj_volume_destroy(volume);
+   
+	return 0;
+}
+

src/bin/jp3d/tcltk/LPI_JP3D_VM.tcl

@@ -0,0 +1,115 @@
+#!/bin/sh
+# The next line is executed by /bin/sh, but not tcl \
+exec wish "$0" ${1+"$@"}
+lappend auto_path /usr/share/tcltk/bwidget1.9.2
+
+namespace eval jp3dVM {
+
+    variable _progress 0
+    variable _afterid  ""
+    variable _status "Compute in progress..."
+    variable notebook
+    variable mainframe
+    variable dataout "Process execution information"
+    variable status
+    variable prgtext
+    variable prgindic
+
+    set pwd [pwd]
+    cd [file dirname [info script]]
+    variable VMDIR [pwd]
+    cd $pwd
+
+    foreach script {encoder.tcl decoder.tcl} {
+	namespace inscope :: source $VMDIR/$script
+    }
+}
+
+
+proc jp3dVM::create { } {
+    variable notebook
+    variable mainframe
+    variable dataout
+
+    bind all <F12> { catch {console show} }
+
+    # Menu description
+    set descmenu {
+        "&File" {} {} 0 {
+            {command "E&xit" {} "Exit BWidget jp3dVM" {} -command exit}
+        }
+        "&Options" {} {} 0 {
+            {command "&Encode" {} "Show encoder" {}
+                -command  {$jp3dVM::notebook raise [$jp3dVM::notebook page 0]}
+            }
+            {command "&Decode" {} "Show decoder" {}
+                -command  {$jp3dVM::notebook raise [$jp3dVM::notebook page 1]}
+            }
+        }
+	"&Help" {} {} 0 {
+            {command "&About authors..." {} "Show info about authors" {} 
+		-command {MessageDlg .msgdlg -parent . -title "About authors" -message " Copyright @ LPI-UVA 2006 " -type ok -icon info}}
+        }
+    }
+
+    set mainframe [MainFrame .mainframe \
+                       -menu         $descmenu \
+                       -textvariable jp3dVM::status \
+                       -progressvar  jp3dVM::prgindic]
+
+    $mainframe addindicator -text "JP3D Verification Model 1.0.0"
+
+    # NoteBook creation
+    set frame    [$mainframe getframe]
+    set notebook [NoteBook $frame.nb]
+
+    set logo [frame $frame.logo]
+    #creo imagen logo
+    image create photo LPIimg -file logoLPI.gif
+    set logoimg [Label $logo.logoimg -image LPIimg]
+    
+    set f0  [VMEncoder::create $notebook]
+    set f1  [VMDecoder::create $notebook]
+
+	set tfinfo [TitleFrame $frame.codinfo -text "Program Execution"]
+	set codinfo [$tfinfo getframe]
+	set sw [ScrolledWindow $codinfo.sw -relief sunken -borderwidth 2 -scrollbar both]
+	set sf [ScrollableFrame $codinfo.sf ]
+	$sw setwidget $sf
+	set subf [$sf getframe]
+	set labinfo [label $subf.labinfo -textvariable jp3dVM::dataout -justify left]
+
+	pack $labinfo -side left 
+	pack $sw 
+
+    $notebook compute_size
+    $notebook raise [$notebook page 0]
+
+    pack $logoimg -side left -fill x -expand yes 
+    pack $notebook -expand yes 
+    pack $logo $tfinfo -side left -expand yes 
+    pack $mainframe -fill both -expand yes
+    update idletasks
+}
+
+
+proc jp3dVM::main {} {
+    variable VMDIR
+
+    lappend ::auto_path [file dirname $VMDIR]
+    namespace inscope :: package require BWidget
+
+    option add *TitleFrame.l.font {helvetica 11 bold italic}
+
+    wm withdraw .
+    wm title . "JP3D Verification Model @ LPI"
+
+    jp3dVM::create
+    BWidget::place . 0 0 center
+    wm deiconify .
+    raise .
+    focus -force .
+}
+
+jp3dVM::main
+wm geom . [wm geom .]