[1.5.2] Add NEWS file

Fixes issue 320

CHANGES

@@ -0,0 +1,198 @@
+2012-10-01  Mathieu Malaterre
+
+	* [r2028] CMakeLists.txt: [1.5] Start opj 1.5.2
+	* [r2029] libopenjpeg/jp2.c: [1.5] jp2_read_boxhdr() can trigger
+	  random pointer memory access
+	  
+	  Fixes issue 155
+
+2012-10-02  Mathieu Malaterre
+
+	* [r2031] libopenjpeg/Makefile.am, libopenjpeg/jpwl/Makefile.am:
+	  [1.5] int main() in t1_generate_luts.c breaks mplayer
+	  
+	  Fixes issue 152
+	* [r2032] libopenjpeg/j2k.c: [1.5] division by zero in j2k_read_siz
+	  
+	  Fixes issue 169
+	* [r2033] libopenjpeg/j2k.c: [1.5] missing range check in
+	  j2k_read_coc et al.
+	  
+	  Fixes issue 166
+	* [r2035] libopenjpeg/CMakeLists.txt: [1.5] Build small internal
+	  tools to generate t1_luts.h
+
+2012-10-22  Mathieu Malaterre
+
+	* [r2107] CMakeLists.txt, applications/JavaOpenJPEG/CMakeLists.txt:
+	  [1.5] Fix Java binding issues.
+	  
+	  Properly link to math lib on UNIX
+	  Make JNI install location a user configuration
+	  Remove SONAME property from the java module
+
+2012-12-07  Rex Dieter
+
+	* [r2260] doc/Doxyfile.dox, doc/Doxyfile.dox.cmake.in: backport
+	  r2259
+	  
+	  Doxyfile: HTML_TIMESTAMP = NO
+	  
+	  helps when comparing the output of multiple runs,
+	  and distros will appreciate avoiding multilib conflicts.
+
+2012-12-18  Mickaël Savinaud
+
+	* [r2265] applications/codec/convert.c: [1.5] improve the bmp read
+	  function for RGB8 case (thanks Winfried). Update issue 203
+
+2013-02-27  Mathieu Malaterre
+
+	* [r2299] libopenjpeg/opj_includes.h: [1.5] Rework #ifdef checks.
+	  We should check for _M_IX86 instead of not(_M_X64). Thanks to
+	  Misha Ulyutin for report on ML
+
+2013-03-14  Mickaël Savinaud
+
+	* [r2305] configure.ac: [b1.5.x] update the micro version into the
+	  configure file (thanks to winfried)
+
+2013-07-11  Antonin Descampe
+
+	* [r2345] tests/conformance/CMakeLists.txt: tests : reactivated
+	  conformance tests in openjpeg 1.5 branch to enable comparison
+	  with trunk
+
+2013-09-26  Mathieu Malaterre
+
+	* [r2346] libopenjpeg/image.c: [1.5] Import patch suggested in bug
+	  #241
+
+2014-02-24  Mathieu Malaterre
+
+	* [r2390] libopenjpeg/bio.c: [1.5] Remove some simple warnings
+	* [r2391] CMake/CTestCustom.cmake.in: [1.5] Do not report warning
+	  on third party lib
+
+2014-02-25  Mathieu Malaterre
+
+	* [r2420] tests/nonregression/CMakeLists.txt,
+	  tests/nonregression/checkmd5refs.cmake,
+	  tests/nonregression/md5refs.txt,
+	  tests/nonregression/test_suite.ctest.in: [1.5] Import md5 checker
+	  from trunk back onto 1.5 branch
+	* [r2423] libopenjpeg/j2k.c: [1.5] Remove addition from r1702 this
+	  introduced a regression as seen in issue 205
+	  
+	  Fixes issue 205
+
+2014-02-26  Mathieu Malaterre
+
+	* [r2437] tests/CMakeLists.txt, tests/conformance/CMakeLists.txt,
+	  tests/nonregression/CMakeLists.txt, tests/unit/CMakeLists.txt:
+	  [1.5] Use new add_test signature to handle cross compilation and
+	  execution using wine
+	* [r2438] applications/codec/convert.c,
+	  applications/codec/image_to_j2k.c, applications/codec/j2k_dump.c,
+	  applications/codec/j2k_to_image.c, libopenjpeg/jp2.c,
+	  libopenjpeg/tcd.c: [1.5] Import first patch (fixes.patch) from
+	  issue 249 to fix leaks on error condition.
+	  
+	  Update issue 249
+	* [r2439] applications/codec/image_to_j2k.c,
+	  applications/codec/j2k_to_image.c: [1.5] Declare functions static
+	  to track unused ones.
+
+2014-03-04  Mathieu Malaterre
+
+	* [r2564] CMakeLists.txt: [1.5] Use improved find_path syntax to
+	  help cross-compilation setup find openjpeg data root
+
+2014-03-12  Mathieu Malaterre
+
+	* [r2696] applications/codec/convert.c, tests/unit/testempty2.c:
+	  [1.5] Fix remainings warnings on 1.5 branch
+	* [r2697] applications/jpip/libopenjpip/msgqueue_manager.c: [1.5]
+	  Prevent buffer overflow in openjpip code
+
+2014-03-17  Mathieu Malaterre
+
+	* [r2750] applications/common/opj_getopt.c: [1.5] Update BSD-4
+	  copyright into a BSD-3 copyright
+	  Update issue 300
+	* [r2752] libopenjpeg/jp2.c, libopenjpeg/t1_generate_luts.c: [1.5]
+	  Remove simple warning about C++ style comments
+	* [r2753] applications/codec/convert.c,
+	  applications/common/color.c, libopenjpeg/j2k.c,
+	  libopenjpeg/jp2.c, libopenjpeg/t1_generate_luts.c,
+	  libopenjpeg/tcd.c: [1.5] Remove another set of simple warnings
+
+2014-03-18  Mathieu Malaterre
+
+	* [r2757] libopenjpeg/cio.c, libopenjpeg/j2k.c, libopenjpeg/jp2.c,
+	  libopenjpeg/t2.c, libopenjpeg/tcd.c,
+	  tests/nonregression/test_suite.ctest.in: [1.5] Import portion of
+	  patch from issue 297
+	  Run test suite on new datasets
+	  Update issue 297
+	* [r2758] libopenjpeg/jp2.c, libopenjpeg/tcd.c: [1.5] Import patch
+	  from trunk to make test passes. Affects:
+	  NR-DEC-2977.pdf.asan.67.2198.jp2-52-decode &
+	  NR-DEC-4149.pdf.SIGSEGV.cf7.3501.jp2-50-decode
+	* [r2759] libopenjpeg/j2k.c: [1.5] Check the number of tiles
+	* [r2760] libopenjpeg/tcd.c: [1.5] Rework r2758 the conditions were
+	  not quite right. Update checks.
+	* [r2762] applications/codec/convert.c: [1.5] Fix issues with big
+	  endian handling
+	  Fixes issue 302
+	* [r2765] applications/jpip/util/CMakeLists.txt: [1.5] Add a way
+	  for user to override source/target java version
+	  Update issue 303
+	* [r2768] CMakeLists.txt, applications/codec/CMakeLists.txt,
+	  applications/common/opj_getopt.c,
+	  applications/common/opj_getopt.h, opj_config.h.cmake.in,
+	  tests/CMakeLists.txt: [1.5] Create a new cmake option to choose
+	  between convienient copy of getopt and system installed one
+	  Udapte issue 301
+	* [r2769] applications/codec/image_to_j2k.c,
+	  applications/codec/j2k_dump.c, applications/codec/j2k_to_image.c,
+	  applications/common/opj_getopt.h: [1.5] Rework r2768 in fact
+	  getopt_long is slightly different on GNU. Adapt signature to
+	  handle BSD signature and GNU one.
+	  Update issue 301
+
+2014-03-24  Rex Dieter
+
+	* [r2780] configure.ac: Calling AC_CANONICAL_SYSTEM implies
+	  AC_CANONICAL_TARGET, which
+	  gives incorrect results when cross compiling. Calling only
+	  AC_CANONICAL_HOST is enough.
+	  
+	  issue: 129
+	* [r2781] doc/Makefile.am: Install jpwl man pages only if jpwl is
+	  enabled
+	  
+	  issue: 129
+	* [r2782] m4/opj_check_lib.m4: Improve check for standard libs
+	  
+	  Previously, with <lib>_LIBS and <lib>_CFLAGS undefined,
+	  the most basic compile command "$CC conftest.c -l<lib>" was not
+	  tested.
+	  
+	  issue: 129
+
+2014-03-25  Mathieu Malaterre
+
+	* [r2800] applications/codec/Makefile.am,
+	  applications/jpip/libopenjpip/CMakeLists.txt: [1.5] Import patch
+	  from bug tracker
+	  Thanks to winfried
+	  Fixes issue 304
+
+2014-03-26  Mathieu Malaterre
+
+	* [r2807] configure.ac: [1.5] Fix big endian checking with
+	  autotools
+	  Thanks to winfried for patch
+	  Fixes issue 302
+

CMake/CTestCustom.cmake.in

@@ -28,7 +28,7 @@ SET(CTEST_CUSTOM_WARNING_EXCEPTION
   # Suppress warning caused by intentional messages about deprecation
   ".*warning,.* is deprecated"
   # supress warnings caused by 3rd party libs:
-  ".*/thirdparty/.*"
+  ".*thirdparty.*"
   "libtiff.*has no symbols"
   "libpng.*has no symbols"
   )

CMakeLists.txt

@@ -29,7 +29,7 @@ INCLUDE_REGULAR_EXPRESSION("^.*$")
 # OPENJPEG version number, useful for packaging and doxygen doc:
 SET(OPENJPEG_VERSION_MAJOR 1)
 SET(OPENJPEG_VERSION_MINOR 5)
-SET(OPENJPEG_VERSION_BUILD 0)
+SET(OPENJPEG_VERSION_BUILD 2)
 SET(OPENJPEG_VERSION
   "${OPENJPEG_VERSION_MAJOR}.${OPENJPEG_VERSION_MINOR}.${OPENJPEG_VERSION_BUILD}")
 SET(PACKAGE_VERSION
@@ -44,6 +44,7 @@ SET(PACKAGE_VERSION
 #   1.3   |  3
 #   1.4   |  4
 #   1.5   |  5
+#   1.5.1 |  5
 #   2.0   |  6
 # above is the recommendation by the OPJ team. If you really need to override this default,
 # you can specify your own OPENJPEG_SOVERSION at cmake configuration time:
@@ -135,6 +136,14 @@ IF(NOT OPENJPEG_INSTALL_DOC_DIR)
   SET(OPENJPEG_INSTALL_DOC_DIR "share/doc/${OPENJPEG_INSTALL_SUBDIR}")
 ENDIF(NOT OPENJPEG_INSTALL_DOC_DIR)
 
+if(NOT OPENJPEG_INSTALL_JNI_DIR)
+  if(WIN32)
+    set(OPENJPEG_INSTALL_JNI_DIR ${OPENJPEG_INSTALL_BIN_DIR})
+  else()
+    set(OPENJPEG_INSTALL_JNI_DIR ${OPENJPEG_INSTALL_LIB_DIR})
+  endif()
+endif()
+
 IF(NOT OPENJPEG_INSTALL_PACKAGE_DIR)
   # We could install *.cmake files in share/ however those files contains
   # hardcoded path to libraries on a multi-arch system (fedora/debian) those
@@ -224,6 +233,8 @@ IF(BUILD_JPIP)
 ENDIF(BUILD_JPIP)
 OPTION(BUILD_VIEWER "Build the OPJViewer executable (C++)" OFF)
 OPTION(BUILD_JAVA "Build the openjpeg jar (Java)" OFF)
+OPTION(USE_SYSTEM_GETOPT "Prefer system installed getopt()" OFF)
+MARK_AS_ADVANCED(USE_SYSTEM_GETOPT)
 MARK_AS_ADVANCED(BUILD_VIEWER)
 MARK_AS_ADVANCED(BUILD_JAVA)
 
@@ -261,10 +272,9 @@ IF(BUILD_TESTING)
     # They could be found via svn on the OpenJPEG google code project
     # svn checkout http://openjpeg.googlecode.com/svn/data (about 70 Mo) 
     FIND_PATH(OPJ_DATA_ROOT README-OPJ-Data
-      PATHS
-      $ENV{OPJ_DATA_ROOT}
-      ${CMAKE_SOURCE_DIR}/../data
-      ${CMAKE_SOURCE_DIR}/../../data
+      PATHS $ENV{OPJ_DATA_ROOT} ${CMAKE_SOURCE_DIR}/../data
+        ${CMAKE_SOURCE_DIR}/../../data
+      NO_DEFAULT_PATH NO_CMAKE_FIND_ROOT_PATH
       )
 
     # Add repository where to find tests

NEWS

@@ -2,23 +2,24 @@
 OpenJPEG NEWS - user visible changes
 ====================================
 
-Changes from OpenJPEG 1.5.1 to OpenJPEG 1.5.0
+Changes from OpenJPEG 1.5.2 to OpenJPEG 1.5.1
 ----------------------------------------------
 
 Security:
 
-    * Fixes: CVE-2012-3535
-    * Fixes: CVE-2012-3358
+    * Fixes: CVE-2013-4289 CVE-2013-4290
+    * Fixes: CVE-2013-1447 CVE-2013-6045 CVE-2013-6052 CVE-2013-6054 CVE-2013-6053 CVE-2013-6887
 
 New Features:
 
-    * Use a new API scheme and solve the SOVERSIONing in OpenJPEG
-    * Allow better integration with multi-arch system
-    * Compile & Install Java bindings (CMake)
-    * Install required addXMLinJP2 (JPIP)
+    * Compile Java with source/target specific java version
+    * Do not set SONAME for Java module, fix linking (missing math lib)
+    * Support some BMP/RGB8 files
+    * Fix compilation on ARM
 
 Misc:
 
-    * fix linker error by resolving all symbols (eg. missing -lm)
-    * fix some man page typos
+    * Remove BSD-4 license from getopt copy, since upstream switched to BSD-3
+    * Support compilation against system installed getopt
+    * Fix Big Endian checking (autotools)
     * Huge amount of bug fixes. See CHANGES for details.

applications/JavaOpenJPEG/CMakeLists.txt

@@ -24,13 +24,14 @@ include_directories(
 add_library(openjpegjni MODULE
   ${openjpegjni_SRCS}
   )
+# Java module should not have a SONAME:
+set_property(TARGET openjpegjni PROPERTY NO_SONAME 1)
+
 TARGET_LINK_LIBRARIES(openjpegjni ${OPENJPEG_LIBRARY_NAME})
 
-IF(WIN32)
-  SET(OPENJPEG_INSTALL_JNI_DIR ${OPENJPEG_INSTALL_BIN_DIR})
-ELSE()
-  SET(OPENJPEG_INSTALL_JNI_DIR ${OPENJPEG_INSTALL_LIB_DIR})
-ENDIF()
+if(UNIX)
+  target_link_libraries(openjpegjni m)
+endif()
 
 INSTALL(TARGETS openjpegjni
   EXPORT OpenJPEGTargets

applications/codec/CMakeLists.txt

@@ -5,8 +5,12 @@ SET(common_SRCS
   convert.c
   index.c
   ${OPENJPEG_SOURCE_DIR}/applications/common/color.c
-  ${OPENJPEG_SOURCE_DIR}/applications/common/opj_getopt.c
   )
+if(NOT USE_SYSTEM_GETOPT)
+  list(APPEND common_SRCS
+    ${OPENJPEG_SOURCE_DIR}/applications/common/opj_getopt.c
+  )
+endif()
 
 # Headers file are located here:
 INCLUDE_DIRECTORIES(

applications/codec/Makefile.am

@@ -78,7 +78,7 @@ JPWL_j2k_to_image_CPPFLAGS = \
 @LCMS1_CFLAGS@ \
 @LCMS2_CFLAGS@
 JPWL_j2k_to_image_CFLAGS =
-JPWL_j2k_to_image_LDADD = $(top_builddir)/libopenjpeg/jpwl/libopenjpeg_JPWL.la  @LCMS1_LIBS@ @LCMS2_LIBS@ @TIFF_LIBS@ @PNG_LIBS@
+JPWL_j2k_to_image_LDADD = $(top_builddir)/libopenjpeg/jpwl/libopenjpeg_JPWL.la  @LCMS1_LIBS@ @LCMS2_LIBS@ @TIFF_LIBS@ @PNG_LIBS@ -lm
 JPWL_j2k_to_image_SOURCES = \
 ../common/color.c \
 ../common/opj_getopt.c \
@@ -96,7 +96,7 @@ JPWL_image_to_j2k_CPPFLAGS = \
 @TIFF_CFLAGS@ \
 @PNG_CFLAGS@
 JPWL_image_to_j2k_CFLAGS =
-JPWL_image_to_j2k_LDADD = $(top_builddir)/libopenjpeg/jpwl/libopenjpeg_JPWL.la @TIFF_LIBS@ @PNG_LIBS@
+JPWL_image_to_j2k_LDADD = $(top_builddir)/libopenjpeg/jpwl/libopenjpeg_JPWL.la @TIFF_LIBS@ @PNG_LIBS@ -lm
 
 JPWL_image_to_j2k_SOURCES = \
 ../common/opj_getopt.c \

applications/codec/convert.c

@@ -94,7 +94,7 @@ struct tga_header
 
 static unsigned short get_ushort(unsigned short val) {
 
-#ifdef WORDS_BIGENDIAN
+#ifdef OPJ_BIG_ENDIAN
 	return( ((val & 0xff) << 8) + (val >> 8) );
 #else
     return( val );
@@ -116,23 +116,28 @@ static int tga_readheader(FILE *fp, unsigned int *bits_per_pixel,
 
 	if (!bits_per_pixel || !width || !height || !flip_image)
 		return 0;
-	tga = (unsigned char*)malloc(18);
+	tga = (unsigned char*)malloc(TGA_HEADER_SIZE);
 
 	if ( fread(tga, TGA_HEADER_SIZE, 1, fp) != 1 )
 	{
 		fprintf(stderr, "\nError: fread return a number of element different from the expected.\n");
-	    return 0 ;
+		free(tga);
+		return 0 ;
 	}
 	id_len = (unsigned char)tga[0];
 	cmap_type = (unsigned char)tga[1];
+  (void)cmap_type;
 	image_type = (unsigned char)tga[2];
 	cmap_index = get_ushort(*(unsigned short*)(&tga[3]));
+  (void)cmap_index;
 	cmap_len = get_ushort(*(unsigned short*)(&tga[5]));
 	cmap_entry_size = (unsigned char)tga[7];
 
 
 	x_origin = get_ushort(*(unsigned short*)(&tga[8]));
+  (void)x_origin;
 	y_origin = get_ushort(*(unsigned short*)(&tga[10]));
+  (void)y_origin;
 	image_w = get_ushort(*(unsigned short*)(&tga[12]));
 	image_h = get_ushort(*(unsigned short*)(&tga[14]));
 	pixel_depth = (unsigned char)tga[16];
@@ -179,7 +184,7 @@ static int tga_readheader(FILE *fp, unsigned int *bits_per_pixel,
 	return 1;
 }
 
-#if WORDS_BIGENDIAN == 1
+#ifdef OPJ_BIG_ENDIAN
 
 static inline int16_t swap16(int16_t x)
 {
@@ -226,7 +231,7 @@ static int tga_writeheader(FILE *fp, int bits_per_pixel, int width, int height,
 	image_w = (unsigned short)width;
 	image_h = (unsigned short) height;
 
-#if WORDS_BIGENDIAN == 0
+#ifndef OPJ_BIG_ENDIAN
 	if(fwrite(&image_w, 2, 1, fp) != 1) goto fails;
 	if(fwrite(&image_h, 2, 1, fp) != 1) goto fails;
 #else
@@ -271,12 +276,16 @@ opj_image_t* tgatoimage(const char *filename, opj_cparameters_t *parameters) {
 		return 0;
 	}
 
-	if (!tga_readheader(f, &pixel_bit_depth, &image_width, &image_height, &flip_image))
+	if (!tga_readheader(f, &pixel_bit_depth, &image_width, &image_height, &flip_image)) {
+		fclose(f);
 		return NULL;
+	}
 
 	/* We currently only support 24 & 32 bit tga's ... */
-	if (!((pixel_bit_depth == 24) || (pixel_bit_depth == 32)))
+	if (!((pixel_bit_depth == 24) || (pixel_bit_depth == 32))) {
+		fclose(f);
 		return NULL;
+	}
 
 	/* initialize image components */   
 	memset(&cmptparm[0], 0, 4 * sizeof(opj_image_cmptparm_t));
@@ -309,8 +318,10 @@ opj_image_t* tgatoimage(const char *filename, opj_cparameters_t *parameters) {
 	/* create the image */
 	image = opj_image_create(numcomps, &cmptparm[0], color_space);
 
-	if (!image)
+	if (!image) {
+		fclose(f);
 		return NULL;
+	}
 
 	/* set image offset and reference grid */
 	image->x0 = parameters->image_offset_x0;
@@ -338,19 +349,22 @@ opj_image_t* tgatoimage(const char *filename, opj_cparameters_t *parameters) {
 				{
 					fprintf(stderr, "\nError: fread return a number of element different from the expected.\n");
 					opj_image_destroy(image);
-				    return NULL;
+					fclose(f);
+					return NULL;
 				}
 				if ( !fread(&g, 1, 1, f) )
 				{
 					fprintf(stderr, "\nError: fread return a number of element different from the expected.\n");
 					opj_image_destroy(image);
-				    return NULL;
+					fclose(f);
+					return NULL;
 				}
 				if ( !fread(&r, 1, 1, f) )
 				{
 					fprintf(stderr, "\nError: fread return a number of element different from the expected.\n");
 					opj_image_destroy(image);
-				    return NULL;
+					fclose(f);
+					return NULL;
 				}
 
 				image->comps[0].data[index]=r;
@@ -368,25 +382,29 @@ opj_image_t* tgatoimage(const char *filename, opj_cparameters_t *parameters) {
 				{
 					fprintf(stderr, "\nError: fread return a number of element different from the expected.\n");
 					opj_image_destroy(image);
-				    return NULL;
+					fclose(f);
+					return NULL;
 				}
 				if ( !fread(&g, 1, 1, f) )
 				{
 					fprintf(stderr, "\nError: fread return a number of element different from the expected.\n");
 					opj_image_destroy(image);
-				    return NULL;
+					fclose(f);
+					return NULL;
 				}
 				if ( !fread(&r, 1, 1, f) )
 				{
 					fprintf(stderr, "\nError: fread return a number of element different from the expected.\n");
 					opj_image_destroy(image);
-				    return NULL;
+					fclose(f);
+					return NULL;
 				}
 				if ( !fread(&a, 1, 1, f) )
 				{
 					fprintf(stderr, "\nError: fread return a number of element different from the expected.\n");
 					opj_image_destroy(image);
-				    return NULL;
+					fclose(f);
+					return NULL;
 				}
 
 				image->comps[0].data[index]=r;
@@ -399,7 +417,8 @@ opj_image_t* tgatoimage(const char *filename, opj_cparameters_t *parameters) {
 		else {
 			fprintf(stderr, "Currently unsupported bit depth : %s\n", filename);
 		}
-	}	
+	}
+	fclose(f);
 	return image;
 }
 
@@ -425,6 +444,7 @@ int imagetotga(opj_image_t * image, const char *outfile) {
 			||(image->comps[0].dy != image->comps[i+1].dy) 
 			||(image->comps[0].prec != image->comps[i+1].prec))	{
       fprintf(stderr, "Unable to create a tga file with such J2K image charateristics.");
+      fclose(fdest);
       return 1;
    }
 	}
@@ -437,8 +457,10 @@ int imagetotga(opj_image_t * image, const char *outfile) {
 
 	/* Write TGA header  */
 	bpp = write_alpha ? 32 : 24;
-	if (!tga_writeheader(fdest, bpp, width , height, OPJ_TRUE))
+	if (!tga_writeheader(fdest, bpp, width , height, OPJ_TRUE)) {
+		fclose(fdest);
 		return 1;
+	}
 
 	alpha_channel = image->numcomps-1; 
 
@@ -468,6 +490,7 @@ int imagetotga(opj_image_t * image, const char *outfile) {
 			res = fwrite(&value,1,1,fdest);
       if( res < 1 ) {
         fprintf(stderr, "failed to write 1 byte for %s\n", outfile);
+        fclose(fdest);
         return 1;
       }
 
@@ -475,6 +498,7 @@ int imagetotga(opj_image_t * image, const char *outfile) {
 			res = fwrite(&value,1,1,fdest);
       if( res < 1 ) {
         fprintf(stderr, "failed to write 1 byte for %s\n", outfile);
+        fclose(fdest);
         return 1;
       }
 
@@ -482,6 +506,7 @@ int imagetotga(opj_image_t * image, const char *outfile) {
 			res = fwrite(&value,1,1,fdest);
       if( res < 1 ) {
         fprintf(stderr, "failed to write 1 byte for %s\n", outfile);
+        fclose(fdest);
         return 1;
       }
 
@@ -491,12 +516,14 @@ int imagetotga(opj_image_t * image, const char *outfile) {
 				res = fwrite(&value,1,1,fdest);
         if( res < 1 ) {
           fprintf(stderr, "failed to write 1 byte for %s\n", outfile);
+          fclose(fdest);
           return 1;
         }
 			}
 		}
 	}
 
+	fclose(fdest);
 	return 0;
 }
 
@@ -534,6 +561,37 @@ typedef struct {
   DWORD biClrImportant;		/* Number of important color (0: ALL) */
 } BITMAPINFOHEADER_t;
 
+	struct bmp_cmap
+   {
+    unsigned char blue;
+    unsigned char green;
+    unsigned char red;
+    unsigned char alpha;
+   };
+
+static void BMP_read_RGB8(int *red, int *green, int *blue, unsigned int line,
+    BITMAPINFOHEADER_t *hdr, struct bmp_cmap bmap[256], FILE *reader,
+    unsigned int offset)
+{
+	unsigned int w, start_pos, y, x, pixel;
+	unsigned int i = 0;
+
+	w = hdr->biWidth;
+
+	start_pos = (((w * hdr->biBitCount + 31) & ~0x1f) >> 3);
+	y  = hdr->biHeight - line - 1;
+	fseek(reader,offset + y * start_pos,SEEK_SET);
+
+	for(x = 0; x < w; ++x)
+   {
+	pixel = fgetc(reader);
+	red[i] = (unsigned char)bmap[pixel].red;
+	green[i] = (unsigned char)bmap[pixel].green;
+	blue[i] = (unsigned char)bmap[pixel].blue;
+	++i;
+   }
+}
+
 opj_image_t* bmptoimage(const char *filename, opj_cparameters_t *parameters) 
 {
 	int subsampling_dx = parameters->subsampling_dx;
@@ -727,37 +785,24 @@ opj_image_t* bmptoimage(const char *filename, opj_cparameters_t *parameters)
 	else 
 	if (Info_h.biBitCount == 8 && Info_h.biCompression == 0)/*RGB */
    {
+	struct bmp_cmap cmap [256];
+	
 	if(Info_h.biClrUsed == 0) Info_h.biClrUsed = 256;
 	else
 	if(Info_h.biClrUsed > 256) Info_h.biClrUsed = 256;
 
-	table_R = (unsigned char *) malloc(256 * sizeof(unsigned char));
-	table_G = (unsigned char *) malloc(256 * sizeof(unsigned char));
-	table_B = (unsigned char *) malloc(256 * sizeof(unsigned char));
-		
-	has_color = 0;	
+    fseek(IN, 14+Info_h.biSize, SEEK_SET);
+    memset(&cmap, 0, sizeof(struct bmp_cmap) * 256);
+
 	for (j = 0; j < Info_h.biClrUsed; j++) 
   {
-	table_B[j] = (unsigned char)getc(IN);
-	table_G[j] = (unsigned char)getc(IN);
-	table_R[j] = (unsigned char)getc(IN);
+	cmap[j].blue = (unsigned char)getc(IN);
+	cmap[j].green = (unsigned char)getc(IN);
+	cmap[j].red = (unsigned char)getc(IN);
 	getc(IN);
-	has_color += 
-	 !(table_R[j] == table_G[j] && table_R[j] == table_B[j]);
   }
-	if(has_color) gray_scale = 0;
-		   
-	/* Place the cursor at the beginning of the image information */
-	fseek(IN, 0, SEEK_SET);
-	fseek(IN, File_h.bfOffBits, SEEK_SET);
-			
-	W = Info_h.biWidth;
-	H = Info_h.biHeight;
-	if (Info_h.biWidth % 2)
-	 W++;
-			
-	numcomps = gray_scale ? 1 : 3;
-	color_space = gray_scale ? CLRSPC_GRAY : CLRSPC_SRGB;
+	numcomps = 3;
+	color_space = CLRSPC_SRGB;
 		/* initialize image components */
 	memset(&cmptparm[0], 0, 3 * sizeof(opj_image_cmptparm_t));
 	for(i = 0; i < numcomps; i++) 
@@ -775,7 +820,6 @@ opj_image_t* bmptoimage(const char *filename, opj_cparameters_t *parameters)
 	if(!image) 
   {
 	fclose(IN);
-	free(table_R); free(table_G); free(table_B);
 	return NULL;
   }
 
@@ -785,55 +829,21 @@ opj_image_t* bmptoimage(const char *filename, opj_cparameters_t *parameters)
 	image->x1 =	!image->x0 ? (w - 1) * subsampling_dx + 1 : image->x0 + (w - 1) * subsampling_dx + 1;
 	image->y1 =	!image->y0 ? (h - 1) * subsampling_dy + 1 : image->y0 + (h - 1) * subsampling_dy + 1;
 
+  {
+	int *red = image->comps[0].data;
+	int *green = image->comps[1].data;
+	int *blue = image->comps[2].data;
+	unsigned int offset = File_h.bfOffBits;
+	int line;
+
 	/* set image data */
-
-	RGB = (unsigned char *) malloc(W * H * sizeof(unsigned char));
-			
-	if ( fread(RGB, sizeof(unsigned char), W * H, IN) != W * H )
-	{
-		free(table_R);
-		free(table_G);
-		free(table_B);
-		free(RGB);
-		opj_image_destroy(image);
-		fprintf(stderr, "\nError: fread return a number of element different from the expected.\n");
-	    return NULL;
-	}
-	if (gray_scale) 
-  {
-	index = 0;
-	for (j = 0; j < W * H; j++) 
+	for(line = 0; line < h; ++line)
  {
-		if ((j % W < W - 1 && Info_h.biWidth % 2) || !(Info_h.biWidth % 2)) 
-	   {
-		image->comps[0].data[index] = 
-		 table_R[RGB[W * H - ((j) / (W) + 1) * W + (j) % (W)]];
-		index++;
-	   }
- }
+	BMP_read_RGB8(red, green, blue, line, &Info_h, cmap, IN, offset);
 
-  } 
-	else 
-  {
-	index = 0;
-	for (j = 0; j < W * H; j++) 
- {
-		if ((j % W < W - 1 && Info_h.biWidth % 2) 
-		|| !(Info_h.biWidth % 2)) 
-	   {
-		unsigned char pixel_index = 
-		 RGB[W * H - ((j) / (W) + 1) * W + (j) % (W)];
-		image->comps[0].data[index] = table_R[pixel_index];
-		image->comps[1].data[index] = table_G[pixel_index];
-		image->comps[2].data[index] = table_B[pixel_index];
-		index++;
-	   }
+	red += w; green += w; blue += w;
  }
   }
-	free(RGB);
-	free(table_R);
-	free(table_G);
-	free(table_B);
    }/* RGB8 */ 
 	else 
 	if (Info_h.biBitCount == 8 && Info_h.biCompression == 1)/*RLE8*/
@@ -1125,7 +1135,12 @@ int imagetobmp(opj_image_t * image, const char *outfile) {
 		<<-- <<-- <<-- <<-- */
 
 		fdest = fopen(outfile, "wb");
-		w = image->comps[0].w;	    
+		if (!fdest) {
+			fprintf(stderr, "ERROR -> failed to open %s for writing\n", outfile);
+			return 1;
+		}
+
+		w = image->comps[0].w;
 		h = image->comps[0].h;
 	    
 		fprintf(fdest, "BM");
@@ -1293,6 +1308,7 @@ opj_image_t* pgxtoimage(const char *filename, opj_cparameters_t *parameters) {
 	fseek(f, 0, SEEK_SET);
 	if( fscanf(f, "PG%[ \t]%c%c%[ \t+-]%d%[ \t]%d%[ \t]%d",temp,&endian1,&endian2,signtmp,&prec,temp,&w,temp,&h) != 9){
 		fprintf(stderr, "ERROR: Failed to read the right number of element from the fscanf() function!\n");
+		fclose(f);
 		return NULL;
 	}
 
@@ -1310,6 +1326,7 @@ opj_image_t* pgxtoimage(const char *filename, opj_cparameters_t *parameters) {
 		bigendian = 0;
 	} else {
 		fprintf(stderr, "Bad pgx header, please check input file\n");
+		fclose(f);
 		return NULL;
 	}
 
@@ -1430,10 +1447,6 @@ int imagetopgx(opj_image_t * image, const char *outfile) {
 			fprintf(stderr, "ERROR -> failed to open %s for writing\n", name);
 			return 1;
 		}
-    /* dont need name anymore */
-    if( total > 256 ) {
-      free(name);
-      }
 
 		w = image->comps[compno].w;
 		h = image->comps[compno].h;
@@ -1453,10 +1466,19 @@ int imagetopgx(opj_image_t * image, const char *outfile) {
 				res = fwrite(&byte, 1, 1, fdest);
         if( res < 1 ) {
           fprintf(stderr, "failed to write 1 byte for %s\n", name);
+          if( total > 256 ) {
+            free(name);
+            }
+          fclose(fdest);
           return 1;
         }
 			}
 		}
+		/* dont need name anymore */
+		if( total > 256 ) {
+			free(name);
+			}
+
 		fclose(fdest);
 	}
 
@@ -2837,6 +2859,7 @@ opj_image_t* rawtoimage(const char *filename, opj_cparameters_t *parameters, raw
 	image = opj_image_create(numcomps, &cmptparm[0], color_space);
 	if(!image) {
 		fclose(f);
+		free(cmptparm);
 		return NULL;
 	}
 	/* set image offset and reference grid */
@@ -2852,6 +2875,9 @@ opj_image_t* rawtoimage(const char *filename, opj_cparameters_t *parameters, raw
 			for (i = 0; i < w * h; i++) {
 				if (!fread(&value, 1, 1, f)) {
 					fprintf(stderr,"Error reading raw file. End of file probably reached.\n");
+					fclose(f);
+					free(cmptparm);
+					opj_image_destroy(image);
 					return NULL;
 				}
 				image->comps[compno].data[i] = raw_cp->rawSigned?(char)value:value;
@@ -2866,11 +2892,17 @@ opj_image_t* rawtoimage(const char *filename, opj_cparameters_t *parameters, raw
 				unsigned char temp;
 				if (!fread(&temp, 1, 1, f)) {
 					fprintf(stderr,"Error reading raw file. End of file probably reached.\n");
+					fclose(f);
+					free(cmptparm);
+					opj_image_destroy(image);
 					return NULL;
 				}
 				value = temp << 8;
 				if (!fread(&temp, 1, 1, f)) {
 					fprintf(stderr,"Error reading raw file. End of file probably reached.\n");
+					fclose(f);
+					free(cmptparm);
+					opj_image_destroy(image);
 					return NULL;
 				}
 				value += temp;
@@ -2880,6 +2912,9 @@ opj_image_t* rawtoimage(const char *filename, opj_cparameters_t *parameters, raw
 	}
 	else {
 		fprintf(stderr,"OpenJPEG cannot encode raw components with bit depth higher than 16 bits.\n");
+		fclose(f);
+		free(cmptparm);
+		opj_image_destroy(image);
 		return NULL;
 	}
 
@@ -2887,6 +2922,7 @@ opj_image_t* rawtoimage(const char *filename, opj_cparameters_t *parameters, raw
 		fprintf(stderr,"Warning. End of raw file not reached... processing anyway\n");
 	}
 	fclose(f);
+	free(cmptparm);
 
 	return image;
 }
@@ -2935,6 +2971,7 @@ int imagetoraw(opj_image_t * image, const char *outfile)
 						res = fwrite(&curr, sizeof(signed char), 1, rawFile);
             if( res < 1 ) {
               fprintf(stderr, "failed to write 1 byte for %s\n", outfile);
+              fclose(rawFile);
               return 1;
             }
 						ptr++;
@@ -2952,6 +2989,7 @@ int imagetoraw(opj_image_t * image, const char *outfile)
 						res = fwrite(&curr, sizeof(unsigned char), 1, rawFile);
             if( res < 1 ) {
               fprintf(stderr, "failed to write 1 byte for %s\n", outfile);
+              fclose(rawFile);
               return 1;
             }
 						ptr++;
@@ -2974,12 +3012,14 @@ int imagetoraw(opj_image_t * image, const char *outfile)
 						res = fwrite(&temp, 1, 1, rawFile);
             if( res < 1 ) {
               fprintf(stderr, "failed to write 1 byte for %s\n", outfile);
+              fclose(rawFile);
               return 1;
             }
 						temp = (unsigned char) curr;
 						res = fwrite(&temp, 1, 1, rawFile);
             if( res < 1 ) {
               fprintf(stderr, "failed to write 1 byte for %s\n", outfile);
+              fclose(rawFile);
               return 1;
             }
 						ptr++;
@@ -2999,12 +3039,14 @@ int imagetoraw(opj_image_t * image, const char *outfile)
 						res = fwrite(&temp, 1, 1, rawFile);
             if( res < 1 ) {
               fprintf(stderr, "failed to write 1 byte for %s\n", outfile);
+              fclose(rawFile);
               return 1;
             }
 						temp = (unsigned char) curr;
 						res = fwrite(&temp, 1, 1, rawFile);
             if( res < 1 ) {
               fprintf(stderr, "failed to write 1 byte for %s\n", outfile);
+              fclose(rawFile);
               return 1;
             }
 						ptr++;
@@ -3015,11 +3057,13 @@ int imagetoraw(opj_image_t * image, const char *outfile)
 		else if (image->comps[compno].prec <= 32)
 		{
 			fprintf(stderr,"More than 16 bits per component no handled yet\n");
+			fclose(rawFile);
 			return 1;
 		}
 		else
 		{
 			fprintf(stderr,"Error: invalid precision: %d\n", image->comps[compno].prec);
+			fclose(rawFile);
 			return 1;
 		}
 	}

applications/codec/image_to_j2k.c

@@ -82,7 +82,7 @@ typedef struct img_folder{
 	float *rates;
 }img_fol_t;
 
-void encode_help_display(void) {
+static void encode_help_display(void) {
 	fprintf(stdout,"HELP for image_to_j2k\n----\n\n");
 	fprintf(stdout,"- the -h option displays this help information on screen\n\n");
 
@@ -321,7 +321,7 @@ void encode_help_display(void) {
 	fprintf(stdout,"TotalDisto\n\n");
 }
 
-OPJ_PROG_ORDER give_progression(char progression[4]) {
+static OPJ_PROG_ORDER give_progression(char progression[4]) {
 	if(strncmp(progression, "LRCP", 4) == 0) {
 		return LRCP;
 	}
@@ -341,7 +341,7 @@ OPJ_PROG_ORDER give_progression(char progression[4]) {
 	return PROG_UNKNOWN;
 }
 
-int get_num_images(char *imgdirpath){
+static int get_num_images(char *imgdirpath){
 	DIR *dir;
 	struct dirent* content;
 	int num_images = 0;
@@ -360,10 +360,11 @@ int get_num_images(char *imgdirpath){
 			continue;
 		num_images++;
 	}
+	closedir(dir);
 	return num_images;
 }
 
-int load_images(dircnt_t *dirptr, char *imgdirpath){
+static int load_images(dircnt_t *dirptr, char *imgdirpath){
 	DIR *dir;
 	struct dirent* content;
 	int i = 0;
@@ -385,10 +386,11 @@ int load_images(dircnt_t *dirptr, char *imgdirpath){
 		strcpy(dirptr->filename[i],content->d_name);
 		i++;
 	}
+	closedir(dir);
 	return 0;
 }
 
-int get_file_format(char *filename) {
+static int get_file_format(char *filename) {
 	unsigned int i;
 	static const char *extension[] = {
     "pgx", "pnm", "pgm", "ppm", "pbm", "pam", "bmp", "tif", "raw", "tga", "png", "j2k", "jp2", "j2c", "jpc"
@@ -408,14 +410,13 @@ int get_file_format(char *filename) {
 	return -1;
 }
 
-char * get_file_name(char *name){
+static char * get_file_name(char *name){
 	char *fname;
-	fname= (char*)malloc(OPJ_PATH_LEN*sizeof(char));
 	fname= strtok(name,".");
 	return fname;
 }
 
-char get_next_file(int imageno,dircnt_t *dirptr,img_fol_t *img_fol, opj_cparameters_t *parameters){
+static char get_next_file(int imageno,dircnt_t *dirptr,img_fol_t *img_fol, opj_cparameters_t *parameters){
 	char image_filename[OPJ_PATH_LEN], infilename[OPJ_PATH_LEN],outfilename[OPJ_PATH_LEN],temp_ofname[OPJ_PATH_LEN];
   char *temp_p, temp1[OPJ_PATH_LEN]="";
 
@@ -458,7 +459,7 @@ static int initialise_4K_poc(opj_poc_t *POC, int numres){
 	return 2;
 }
 
-void cinema_parameters(opj_cparameters_t *parameters){
+static void cinema_parameters(opj_cparameters_t *parameters){
 	parameters->tile_size_on = OPJ_FALSE;
 	parameters->cp_tdx=1;
 	parameters->cp_tdy=1;
@@ -491,7 +492,7 @@ void cinema_parameters(opj_cparameters_t *parameters){
 
 }
 
-void cinema_setup_encoder(opj_cparameters_t *parameters,opj_image_t *image, img_fol_t *img_fol){
+static void cinema_setup_encoder(opj_cparameters_t *parameters,opj_image_t *image, img_fol_t *img_fol){
 	int i;
 	float temp_rate;
 
@@ -576,7 +577,7 @@ void cinema_setup_encoder(opj_cparameters_t *parameters,opj_image_t *image, img_
 
 /* ------------------------------------------------------------------------------------ */
 
-int parse_cmdline_encoder(int argc, char **argv, opj_cparameters_t *parameters,
+static int parse_cmdline_encoder(int argc, char **argv, opj_cparameters_t *parameters,
 													img_fol_t *img_fol, raw_cparameters_t *raw_cp, char *indexfilename) {
 	int i, j, totlen, c;
 	opj_option_t long_option[]={
@@ -589,7 +590,8 @@ int parse_cmdline_encoder(int argc, char **argv, opj_cparameters_t *parameters,
 		{"OutFor",REQ_ARG, NULL ,'O'},
 		{"POC",REQ_ARG, NULL ,'P'},
 		{"ROI",REQ_ARG, NULL ,'R'},
-		{"jpip",NO_ARG, NULL, 'J'}
+		{"jpip",NO_ARG, NULL, 'J'},
+		{0,0,0,0} /* GNU getopt_long requirement */
 	};
 
 	/* parse the command line */
@@ -599,12 +601,16 @@ int parse_cmdline_encoder(int argc, char **argv, opj_cparameters_t *parameters,
 #endif /* USE_JPWL */
 		"h";
 
-	totlen=sizeof(long_option);
+	totlen=sizeof(long_option)-1;
 	img_fol->set_out_format=0;
 	raw_cp->rawWidth = 0;
 
 	do{
+#ifdef USE_SYSTEM_GETOPT
+		c = opj_getopt_long(argc, argv, optlist,long_option,0);
+#else
 		c = opj_getopt_long(argc, argv, optlist,long_option,totlen);
+#endif
 		if (c == -1)
 			break;
 		switch (c) {
@@ -1466,21 +1472,21 @@ int parse_cmdline_encoder(int argc, char **argv, opj_cparameters_t *parameters,
 /**
 sample error callback expecting a FILE* client object
 */
-void error_callback(const char *msg, void *client_data) {
+static void error_callback(const char *msg, void *client_data) {
 	FILE *stream = (FILE*)client_data;
 	fprintf(stream, "[ERROR] %s", msg);
 }
 /**
 sample warning callback expecting a FILE* client object
 */
-void warning_callback(const char *msg, void *client_data) {
+static void warning_callback(const char *msg, void *client_data) {
 	FILE *stream = (FILE*)client_data;
 	fprintf(stream, "[WARNING] %s", msg);
 }
 /**
 sample debug callback expecting a FILE* client object
 */
-void info_callback(const char *msg, void *client_data) {
+static void info_callback(const char *msg, void *client_data) {
 	FILE *stream = (FILE*)client_data;
 	fprintf(stream, "[INFO] %s", msg);
 }

applications/codec/j2k_dump.c

@@ -121,6 +121,7 @@ int get_num_images(char *imgdirpath){
 			continue;
 		num_images++;
 	}
+	closedir(dir);
 	return num_images;
 }
 
@@ -146,6 +147,7 @@ int load_images(dircnt_t *dirptr, char *imgdirpath){
 		strcpy(dirptr->filename[i],content->d_name);
 		i++;
 	}
+	closedir(dir);
 	return 0;	
 }
 
@@ -199,15 +201,20 @@ int parse_cmdline_decoder(int argc, char **argv, opj_dparameters_t *parameters,i
 	int totlen, c;
 	opj_option_t long_option[]={
 		{"ImgDir",REQ_ARG, NULL ,'y'},
+		{0,0,0,0} /* GNU getopt_long requirement */
 	};
 	const char optlist[] = "i:o:h";
 
 	OPJ_ARG_NOT_USED(indexfilename);
 
-	totlen=sizeof(long_option);
+	totlen=sizeof(long_option)-1;
 	img_fol->set_out_format = 0;
 	do {
+#ifdef USE_SYSTEM_GETOPT
+		c = opj_getopt_long(argc, argv,optlist,long_option,0);
+#else
 		c = opj_getopt_long(argc, argv,optlist,long_option,totlen);
+#endif
 		if (c == -1)
 			break;
 		switch (c) {

applications/codec/j2k_to_image.c

@@ -85,7 +85,7 @@ typedef struct img_folder{
 
 }img_fol_t;
 
-void decode_help_display(void) {
+static void decode_help_display(void) {
 	fprintf(stdout,"HELP for j2k_to_image\n----\n\n");
 	fprintf(stdout,"- the -h option displays this help information on screen\n\n");
 
@@ -144,7 +144,7 @@ void decode_help_display(void) {
 
 /* -------------------------------------------------------------------------- */
 
-int get_num_images(char *imgdirpath){
+static int get_num_images(char *imgdirpath){
 	DIR *dir;
 	struct dirent* content;	
 	int num_images = 0;
@@ -162,10 +162,11 @@ int get_num_images(char *imgdirpath){
 			continue;
 		num_images++;
 	}
+	closedir(dir);
 	return num_images;
 }
 
-int load_images(dircnt_t *dirptr, char *imgdirpath){
+static int load_images(dircnt_t *dirptr, char *imgdirpath){
 	DIR *dir;
 	struct dirent* content;	
 	int i = 0;
@@ -187,10 +188,11 @@ int load_images(dircnt_t *dirptr, char *imgdirpath){
 		strcpy(dirptr->filename[i],content->d_name);
 		i++;
 	}
+	closedir(dir);
 	return 0;	
 }
 
-int get_file_format(char *filename) {
+static int get_file_format(char *filename) {
 	unsigned int i;
 	static const char *extension[] = {"pgx", "pnm", "pgm", "ppm", "bmp","tif", "raw", "tga", "png", "j2k", "jp2", "jpt", "j2c", "jpc" };
 	static const int format[] = { PGX_DFMT, PXM_DFMT, PXM_DFMT, PXM_DFMT, BMP_DFMT, TIF_DFMT, RAW_DFMT, TGA_DFMT, PNG_DFMT, J2K_CFMT, JP2_CFMT, JPT_CFMT, J2K_CFMT, J2K_CFMT };
@@ -209,7 +211,7 @@ int get_file_format(char *filename) {
 	return -1;
 }
 
-char get_next_file(int imageno,dircnt_t *dirptr,img_fol_t *img_fol, opj_dparameters_t *parameters){
+static char get_next_file(int imageno,dircnt_t *dirptr,img_fol_t *img_fol, opj_dparameters_t *parameters){
 	char image_filename[OPJ_PATH_LEN], infilename[OPJ_PATH_LEN],outfilename[OPJ_PATH_LEN],temp_ofname[OPJ_PATH_LEN];
 	char *temp_p, temp1[OPJ_PATH_LEN]="";
 
@@ -235,12 +237,13 @@ char get_next_file(int imageno,dircnt_t *dirptr,img_fol_t *img_fol, opj_dparamet
 }
 
 /* -------------------------------------------------------------------------- */
-int parse_cmdline_decoder(int argc, char **argv, opj_dparameters_t *parameters,img_fol_t *img_fol, char *indexfilename) {
+static int parse_cmdline_decoder(int argc, char **argv, opj_dparameters_t *parameters,img_fol_t *img_fol, char *indexfilename) {
 	/* parse the command line */
 	int totlen, c;
 	opj_option_t long_option[]={
 		{"ImgDir",REQ_ARG, NULL ,'y'},
 		{"OutFor",REQ_ARG, NULL ,'O'},
+		{0,0,0,0} /* GNU getopt_long requirement */
 	};
 
 	const char optlist[] = "i:o:r:l:x:"
@@ -251,10 +254,14 @@ int parse_cmdline_decoder(int argc, char **argv, opj_dparameters_t *parameters,i
 #endif /* USE_JPWL */
 /* <<UniPG */
 			"h"		;
-	totlen=sizeof(long_option);
+	totlen=sizeof(long_option) - 1;
 	img_fol->set_out_format = 0;
 	do {
+#ifdef USE_SYSTEM_GETOPT
+		c = opj_getopt_long(argc, argv,optlist,long_option,0);
+#else
 		c = opj_getopt_long(argc, argv,optlist,long_option,totlen);
+#endif
 		if (c == -1)
 			break;
 		switch (c) {
@@ -490,21 +497,21 @@ int parse_cmdline_decoder(int argc, char **argv, opj_dparameters_t *parameters,i
 /**
 sample error callback expecting a FILE* client object
 */
-void error_callback(const char *msg, void *client_data) {
+static void error_callback(const char *msg, void *client_data) {
 	FILE *stream = (FILE*)client_data;
 	fprintf(stream, "[ERROR] %s", msg);
 }
 /**
 sample warning callback expecting a FILE* client object
 */
-void warning_callback(const char *msg, void *client_data) {
+static void warning_callback(const char *msg, void *client_data) {
 	FILE *stream = (FILE*)client_data;
 	fprintf(stream, "[WARNING] %s", msg);
 }
 /**
 sample debug callback expecting no client object
 */
-void info_callback(const char *msg, void *client_data) {
+static void info_callback(const char *msg, void *client_data) {
 	(void)client_data;
 	fprintf(stdout, "[INFO] %s", msg);
 }

applications/common/color.c

@@ -293,12 +293,14 @@ void color_apply_icc_profile(opj_image_t *image)
 	if(in_prof == NULL) return;
 
 	in_space = cmsGetPCS(in_prof);
+  (void)in_space;
 	out_space = cmsGetColorSpace(in_prof);
 	intent = cmsGetHeaderRenderingIntent(in_prof);
 
 	
 	max_w = image->comps[0].w; max_h = image->comps[0].h;
 	prec = image->comps[0].prec;
+  (void)prec;
 	oldspace = image->color_space;
 
 	if(out_space == cmsSigRgbData) /* enumCS 16 */

applications/common/opj_getopt.c

@@ -10,11 +10,7 @@
  * 2. Redistributions in binary form must reproduce the above copyright
  *    notice, this list of conditions and the following disclaimer in the
  *    documentation and/or other materials provided with the distribution.
- * 3. All advertising materials mentioning features or use of this software
- *    must display the following acknowledgement:
- *	This product includes software developed by the University of
- *	California, Berkeley and its contributors.
- * 4. Neither the name of the University nor the names of its contributors
+ * 3. Neither the name of the University nor the names of its contributors
  *    may be used to endorse or promote products derived from this software
  *    without specific prior written permission.
  *
@@ -42,6 +38,10 @@ static char sccsid[] = "@(#)opj_getopt.c	8.3 (Berkeley) 4/27/95";
 #include <string.h>
 #include "opj_getopt.h"
 
+#ifdef USE_SYSTEM_GETOPT
+#error
+#endif
+
 int opj_opterr = 1,			/* if error message should be printed */
  opj_optind = 1,			/* index into parent argv vector */
  opj_optopt,			/* character checked for validity */

applications/common/opj_getopt.h

@@ -1,5 +1,26 @@
 /* last review : october 29th, 2002 */
 
+#include "opj_config.h"
+
+#ifdef USE_SYSTEM_GETOPT
+#include <getopt.h>
+
+#define opj_opterr opterr
+#define opj_optind optind
+#define opj_optopt optopt
+#define opj_optreset optreset
+#define opj_optarg optarg
+
+typedef struct option opj_option_t;
+
+#define NO_ARG no_argument
+#define REQ_ARG required_argument
+#define OPT_ARG optional_argument
+
+#define opj_getopt getopt
+#define opj_getopt_long getopt_long
+
+#else
 #ifndef _GETOPT_H_
 #define _GETOPT_H_
 
@@ -9,7 +30,7 @@ typedef struct opj_option
 	int has_arg;
 	int *flag;
 	int val;
-}opj_option_t;
+} opj_option_t;
 
 #define	NO_ARG	0
 #define REQ_ARG	1
@@ -27,3 +48,4 @@ extern int opj_getopt_long(int argc, char * const argv[], const char *optstring,
 extern void reset_options_reading(void);
 
 #endif				/* _GETOPT_H_ */
+#endif /* USE_SYSTEM_GETOPT */

applications/jpip/libopenjpip/CMakeLists.txt

@@ -62,7 +62,7 @@ INSTALL(TARGETS openjpip_local
 
 IF(BUILD_JPIP_SERVER)
   ADD_LIBRARY(openjpip_server STATIC ${OPENJPIP_SRCS} ${SERVER_SRCS})
-  TARGET_LINK_LIBRARIES(openjpip_server ${FCGI_LIBRARIES} ${CURL_LIBRARIES} ${CMAKE_THREAD_LIBS})
+  TARGET_LINK_LIBRARIES(openjpip_server ${FCGI_LIBRARIES} ${CURL_LIBRARIES} ${CMAKE_THREAD_LIBS_INIT})
   SET_TARGET_PROPERTIES(openjpip_server
     PROPERTIES COMPILE_FLAGS "-DSERVER")
   INSTALL(TARGETS openjpip_server

applications/jpip/libopenjpip/msgqueue_manager.c

@@ -677,7 +677,7 @@ placeholder_param_t * parse_phld( Byte_t *datastream, Byte8_t metalength)
   phld = (placeholder_param_t *)malloc( sizeof(placeholder_param_t));
   
   phld->LBox = big4( datastream);
-  strcpy( phld->TBox, "phld");
+  strncpy( phld->TBox, "phld", 4);
   phld->Flags = big4( datastream+8);
   phld->OrigID = big8( datastream+12);
   phld->OrigBHlen = metalength - 20;

applications/jpip/util/CMakeLists.txt

@@ -57,6 +57,14 @@ ENDFOREACH(exe)
 # Build the two java clients:
 FIND_PACKAGE(Java 1.5 COMPONENTS Development) # javac, jar
 
+# User can override this:
+if(NOT DEFINED JAVA_SOURCE_VERSION) 
+  set(JAVA_SOURCE_VERSION 1.5)
+endif()
+if(NOT DEFINED JAVA_TARGET_VERSION)
+  set(JAVA_TARGET_VERSION 1.5)
+endif()
+
 # Only build the java viewer if dev is found:
 if(Java_Development_FOUND AND Java_JAVAC_EXECUTABLE)
   set(jflags $ENV{JFLAGS})
@@ -70,6 +78,7 @@ if(Java_Development_FOUND AND Java_JAVAC_EXECUTABLE)
   ADD_CUSTOM_COMMAND(
     OUTPUT ${LIBRARY_OUTPUT_PATH}/opj_viewer.jar
     COMMAND ${Java_JAVAC_EXECUTABLE} ${jflags}
+    -source ${JAVA_SOURCE_VERSION} -target ${JAVA_TARGET_VERSION}
     ${java1_srcs} -d ${CMAKE_CURRENT_BINARY_DIR}/classes1
     COMMAND ${Java_JAR_EXECUTABLE} cfm ${LIBRARY_OUTPUT_PATH}/opj_viewer.jar
     ${CMAKE_CURRENT_SOURCE_DIR}/opj_viewer/dist/manifest.txt -C
@@ -124,6 +133,7 @@ if(Java_Development_FOUND AND Java_JAVAC_EXECUTABLE)
     ADD_CUSTOM_COMMAND(
       OUTPUT ${LIBRARY_OUTPUT_PATH}/opj_viewer_xerces.jar
       COMMAND ${Java_JAVAC_EXECUTABLE} ${jflags}
+      -source ${JAVA_SOURCE_VERSION} -target ${JAVA_TARGET_VERSION}
       -classpath ${APACHE_XERCES_JAR}
       ${java2_srcs} -d ${CMAKE_CURRENT_BINARY_DIR}/classes2
       COMMAND ${Java_JAR_EXECUTABLE} cfm ${LIBRARY_OUTPUT_PATH}/opj_viewer_xerces.jar

configure.ac

@@ -7,7 +7,7 @@
 
 m4_define([OPJ_MAJOR], [1])
 m4_define([OPJ_MINOR], [5])
-m4_define([OPJ_MICRO], [0])
+m4_define([OPJ_MICRO], [2])
 
 m4_define([lt_cur], m4_eval(OPJ_MAJOR + OPJ_MINOR))
 m4_define([lt_rev], OPJ_MICRO)
@@ -23,7 +23,6 @@ AC_CONFIG_SRCDIR([configure.ac])
 AC_CONFIG_MACRO_DIR([m4])
 AC_CONFIG_HEADERS([opj_config.h])
 
-AC_CANONICAL_SYSTEM
 AC_CANONICAL_HOST
 
 AM_INIT_AUTOMAKE([1.11 foreign dist-bzip2 dist-xz dist-zip])
@@ -466,8 +465,14 @@ AC_HEADER_DIRENT
 ### Checks for compiler characteristics
 
 AM_PROG_CC_C_O
-AC_C_BIGENDIAN
-
+ac_cv_c_big_endian=0
+AC_C_BIGENDIAN([ac_cv_c_big_endian=yes], [ac_cv_c_big_endian=no],[])
+#
+if test "x${ac_cv_c_big_endian}" = "xyes" ; then
+ AC_DEFINE(OPJ_BIG_ENDIAN, [1], [define to 1 if your machine has BE])
+ AC_DEFINE(WORDS_BIGENDIAN, [1], [define to 1 if your machine has BE])
+fi
+#
 #OPJ_COMPILER_FLAG([-Wall])
 #OPJ_COMPILER_FLAG([-Wextra])
 #OPJ_COMPILER_FLAG([-Wshadow])

doc/Doxyfile.dox

@@ -147,7 +147,7 @@ HTML_STYLESHEET        =
 HTML_COLORSTYLE_HUE    = 220
 HTML_COLORSTYLE_SAT    = 100
 HTML_COLORSTYLE_GAMMA  = 80
-HTML_TIMESTAMP         = YES
+HTML_TIMESTAMP         = NO 
 HTML_ALIGN_MEMBERS     = YES
 HTML_DYNAMIC_SECTIONS  = NO
 GENERATE_DOCSET        = NO

doc/Doxyfile.dox.cmake.in

@@ -148,7 +148,7 @@ HTML_STYLESHEET        =
 HTML_COLORSTYLE_HUE    = 220
 HTML_COLORSTYLE_SAT    = 100
 HTML_COLORSTYLE_GAMMA  = 80
-HTML_TIMESTAMP         = YES
+HTML_TIMESTAMP         = NO 
 HTML_ALIGN_MEMBERS     = YES
 HTML_DYNAMIC_SECTIONS  = NO
 GENERATE_DOCSET        = NO

doc/Makefile.am

@@ -45,6 +45,11 @@ dist_man3_MANS = \
 man/man3/libopenjpeg.3
 
 install-data-hook:
+	@echo -e " (MAN)\t$(man1dir)/image_to_j2k.1" >> $(top_builddir)/report.txt
+	@echo -e " (MAN)\t$(man1dir)/j2k_dump.1" >> $(top_builddir)/report.txt
+	@echo -e " (MAN)\t$(man1dir)/j2k_to_image.1" >> $(top_builddir)/report.txt
+	@echo -e " (MAN)\t$(man3dir)/libopenjpeg.3" >> $(top_builddir)/report.txt
+if WANT_JPWL
 	cd $(DESTDIR)$(man1dir) && \
 	  rm -f jpwl_image_to_j2k.1 && \
 	  $(LN_S) image_to_j2k.1 jpwl_image_to_j2k.1
@@ -54,18 +59,17 @@ install-data-hook:
 	cd $(DESTDIR)$(man3dir) && \
 	  rm -f jpwl_libopenjpeg.3 && \
 	  $(LN_S) libopenjpeg.3 jpwl_libopenjpeg.3
-	@echo -e " (MAN)\t$(man1dir)/image_to_j2k.1" >> $(top_builddir)/report.txt
 	@echo -e " (LN)\t$(man1dir)/jpwl_image_to_j2k.1" >> $(top_builddir)/report.txt
-	@echo -e " (MAN)\t$(man1dir)/j2k_dump.1" >> $(top_builddir)/report.txt
-	@echo -e " (MAN)\t$(man1dir)/j2k_to_image.1" >> $(top_builddir)/report.txt
 	@echo -e " (LN)\t$(man1dir)//jpwl_j2k_to_image.1" >> $(top_builddir)/report.txt
-	@echo -e " (MAN)\t$(man3dir)/libopenjpeg.3" >> $(top_builddir)/report.txt
 	@echo -e " (LN)\t$(man3dir)/jpwl_libopenjpeg.3" >> $(top_builddir)/report.txt
+endif
 
 uninstall-hook:
+if WANT_JPWL
 	rm -f $(DESTDIR)$(man1dir)/jpwl_image_to_j2k.1
 	rm -f $(DESTDIR)$(man1dir)/jpwl_j2k_to_image.1
 	rm -f $(DESTDIR)$(man3dir)/jpwl_libopenjpeg.3
+endif
 
 EXTRA_DIST = \
 CMakeLists.txt \

libopenjpeg/CMakeLists.txt

@@ -62,3 +62,10 @@ INSTALL(FILES openjpeg.h
 INSTALL(
   FILES       ${OPENJPEG_SOURCE_DIR}/doc/man/man3/libopenjpeg.3
   DESTINATION ${OPENJPEG_INSTALL_MAN_DIR}/man3)
+
+# internal utilities to generate t1_luts.h
+# no need to install:
+ADD_EXECUTABLE(t1_generate_luts t1_generate_luts.c)
+IF(UNIX)
+  TARGET_LINK_LIBRARIES(t1_generate_luts m)
+ENDIF()

libopenjpeg/Makefile.am

@@ -35,7 +35,6 @@ openjpeg.c \
 pi.c \
 raw.c \
 t1.c \
-t1_generate_luts.c \
 t2.c \
 tcd.c \
 tgt.c \

libopenjpeg/bio.c

@@ -42,7 +42,7 @@ Write a bit
 @param bio BIO handle
 @param b Bit to write (0 or 1)
 */
-static void bio_putbit(opj_bio_t *bio, int b);
+static void bio_putbit(opj_bio_t *bio, unsigned int b);
 /**
 Read a bit
 @param bio BIO handle
@@ -78,7 +78,7 @@ static int bio_byteout(opj_bio_t *bio) {
 	if (bio->bp >= bio->end) {
 		return 1;
 	}
-	*bio->bp++ = bio->buf >> 8;
+	*bio->bp++ = (unsigned char)(bio->buf >> 8);
 	return 0;
 }
 
@@ -92,7 +92,7 @@ static int bio_bytein(opj_bio_t *bio) {
 	return 0;
 }
 
-static void bio_putbit(opj_bio_t *bio, int b) {
+static void bio_putbit(opj_bio_t *bio, unsigned int b) {
 	if (bio->ct == 0) {
 		bio_byteout(bio);
 	}
@@ -126,7 +126,7 @@ void bio_destroy(opj_bio_t *bio) {
 }
 
 int bio_numbytes(opj_bio_t *bio) {
-	return (bio->bp - bio->start);
+	return (int)(bio->bp - bio->start);
 }
 
 void bio_init_enc(opj_bio_t *bio, unsigned char *bp, int len) {

libopenjpeg/cio.c

@@ -30,6 +30,7 @@
  */
 
 #include "opj_includes.h"
+#include <assert.h>
 
 /* ----------------------------------------------------------------------- */
 
@@ -106,6 +107,7 @@ int OPJ_CALLCONV cio_tell(opj_cio_t *cio) {
  * pos : position, in number of bytes, from the beginning of the stream
  */
 void OPJ_CALLCONV cio_seek(opj_cio_t *cio, int pos) {
+  assert((cio->start + pos) <= cio->end);
 	cio->bp = cio->start + pos;
 }
 
@@ -113,6 +115,7 @@ void OPJ_CALLCONV cio_seek(opj_cio_t *cio, int pos) {
  * Number of bytes left before the end of the stream.
  */
 int cio_numbytesleft(opj_cio_t *cio) {
+  assert((cio->end - cio->bp) >= 0);
 	return cio->end - cio->bp;
 }
 
@@ -139,6 +142,7 @@ opj_bool cio_byteout(opj_cio_t *cio, unsigned char v) {
  * Read a byte.
  */
 unsigned char cio_bytein(opj_cio_t *cio) {
+  assert(cio->bp >= cio->start);
 	if (cio->bp >= cio->end) {
 		opj_event_msg(cio->cinfo, EVT_ERROR, "read error: passed the end of the codestream (start = %d, current = %d, end = %d\n", cio->start, cio->bp, cio->end);
 		return 0;
@@ -173,7 +177,7 @@ unsigned int cio_read(opj_cio_t *cio, int n) {
 	unsigned int v;
 	v = 0;
 	for (i = n - 1; i >= 0; i--) {
-		v += cio_bytein(cio) << (i << 3);
+		v += (unsigned int)cio_bytein(cio) << (i << 3);
 	}
 	return v;
 }
@@ -184,6 +188,10 @@ unsigned int cio_read(opj_cio_t *cio, int n) {
  * n : number of bytes to skip
  */
 void cio_skip(opj_cio_t *cio, int n) {
+  assert((cio->bp + n) >= cio->bp);
+  if (((cio->bp + n) < cio->start) || ((cio->bp + n) > cio->end)) {
+    assert(0);
+  }
 	cio->bp += n;
 }
 

libopenjpeg/image.c

@@ -40,7 +40,7 @@ opj_image_t* OPJ_CALLCONV opj_image_create(int numcmpts, opj_image_cmptparm_t *c
 		image->color_space = clrspc;
 		image->numcomps = numcmpts;
 		/* allocate memory for the per-component information */
-		image->comps = (opj_image_comp_t*)opj_malloc(image->numcomps * sizeof(opj_image_comp_t));
+		image->comps = (opj_image_comp_t*)opj_calloc(1,image->numcomps * sizeof(opj_image_comp_t));
 		if(!image->comps) {
 			fprintf(stderr,"Unable to allocate memory for image.\n");
 			opj_image_destroy(image);

libopenjpeg/j2k.c

@@ -32,6 +32,7 @@
  */
 
 #include "opj_includes.h"
+#include <assert.h>
 
 /** @defgroup J2K J2K - JPEG-2000 codestream reader/writer */
 /*@{*/
@@ -404,6 +405,7 @@ static void j2k_write_siz(opj_j2k_t *j2k) {
 
 static void j2k_read_siz(opj_j2k_t *j2k) {
 	int len, i;
+  int n_comps;
 	
 	opj_cio_t *cio = j2k->cio;
 	opj_image_t *image = j2k->image;
@@ -422,12 +424,32 @@ static void j2k_read_siz(opj_j2k_t *j2k) {
 	
 	if ((image->x0<0)||(image->x1<0)||(image->y0<0)||(image->y1<0)) {
 		opj_event_msg(j2k->cinfo, EVT_ERROR,
-									"%s: invalid image size (x0:%d, x1:%d, y0:%d, y1:%d)\n",
+									"invalid image size (x0:%d, x1:%d, y0:%d, y1:%d)\n",
 									image->x0,image->x1,image->y0,image->y1);
 		return;
 	}
 	
+  n_comps = (len - 36 - 2 ) / 3;
+  assert( (len - 36 - 2 ) % 3 == 0 );
 	image->numcomps = cio_read(cio, 2);	/* Csiz */
+  assert( n_comps == image->numcomps );
+
+  /* testcase 4035.pdf.SIGSEGV.d8b.3375 */
+  if (image->x0 > image->x1 || image->y0 > image->y1) {
+    opj_event_msg(j2k->cinfo, EVT_ERROR, "Error with SIZ marker: negative image size (%d x %d)\n", image->x1 - image->x0, image->y1 - image->y0);
+    return;
+  }
+  /* testcase 2539.pdf.SIGFPE.706.1712 (also 3622.pdf.SIGFPE.706.2916 and 4008.pdf.SIGFPE.706.3345 and maybe more) */
+  if (!(cp->tdx * cp->tdy)) {
+    opj_event_msg(j2k->cinfo, EVT_ERROR, "Error with SIZ marker: invalid tile size (tdx: %d, tdy: %d)\n", cp->tdx, cp->tdy);
+    return;
+  }
+
+  /* testcase 1610.pdf.SIGSEGV.59c.681 */
+  if (((int64)image->x1) * ((int64)image->y1) != (image->x1 * image->y1)) {
+    opj_event_msg(j2k->cinfo, EVT_ERROR, "Prevent buffer overflow (x1: %d, y1: %d)\n", image->x1, image->y1);
+    return;
+  }
 
 #ifdef USE_JPWL
 	if (j2k->cp->correct) {
@@ -466,11 +488,19 @@ static void j2k_read_siz(opj_j2k_t *j2k) {
 		/* update components number in the jpwl_exp_comps filed */
 		cp->exp_comps = image->numcomps;
 	}
+#else
+  (void)len;
 #endif /* USE_JPWL */
 
+  /* prevent division by zero */
+  if (!(cp->tdx * cp->tdy)) {
+    opj_event_msg(j2k->cinfo, EVT_ERROR, "invalid tile size (tdx: %d, tdy: %d)\n", cp->tdx, cp->tdy);
+    return;
+  }
+
 	image->comps = (opj_image_comp_t*) opj_calloc(image->numcomps, sizeof(opj_image_comp_t));
 	for (i = 0; i < image->numcomps; i++) {
-		int tmp, w, h;
+		int tmp;
 		tmp = cio_read(cio, 1);		/* Ssiz_i */
 		image->comps[i].prec = (tmp & 0x7f) + 1;
 		image->comps[i].sgnd = tmp >> 7;
@@ -506,9 +536,11 @@ static void j2k_read_siz(opj_j2k_t *j2k) {
 		}
 #endif /* USE_JPWL */
 
-		/* TODO: unused ? */
-		w = int_ceildiv(image->x1 - image->x0, image->comps[i].dx);
-		h = int_ceildiv(image->y1 - image->y0, image->comps[i].dy);
+    /* prevent division by zero */
+    if (!(image->comps[i].dx * image->comps[i].dy)) {
+      opj_event_msg(j2k->cinfo, EVT_ERROR, "JPWL: invalid component size (dx: %d, dy: %d)\n", image->comps[i].dx, image->comps[i].dy);
+      return;
+    }
 
 		image->comps[i].resno_decoded = 0;	/* number of resolution decoded */
 		image->comps[i].factor = cp->reduce; /* reducing factor per component */
@@ -517,6 +549,15 @@ static void j2k_read_siz(opj_j2k_t *j2k) {
 	cp->tw = int_ceildiv(image->x1 - cp->tx0, cp->tdx);
 	cp->th = int_ceildiv(image->y1 - cp->ty0, cp->tdy);
 
+  /* gdal_fuzzer_check_number_of_tiles.jp2 */
+  if (cp->tw == 0 || cp->th == 0 || cp->tw > 65535 / cp->th) {
+    opj_event_msg(j2k->cinfo, EVT_ERROR, 
+                            "Invalid number of tiles : %u x %u (maximum fixed by jpeg2000 norm is 65535 tiles)\n",
+                            cp->tw, cp->th);
+    return;
+  }
+
+
 #ifdef USE_JPWL
 	if (j2k->cp->correct) {
 		/* if JPWL is on, we check whether TX errors have damaged
@@ -769,6 +810,7 @@ static void j2k_read_cod(opj_j2k_t *j2k) {
 	opj_image_t *image = j2k->image;
 	
 	len = cio_read(cio, 2);				/* Lcod */
+  (void)len;
 	tcp->csty = cio_read(cio, 1);		/* Scod */
 	tcp->prg = (OPJ_PROG_ORDER)cio_read(cio, 1);		/* SGcod (A) */
 	tcp->numlayers = cio_read(cio, 2);	/* SGcod (B) */
@@ -822,7 +864,14 @@ static void j2k_read_coc(opj_j2k_t *j2k) {
 	opj_cio_t *cio = j2k->cio;
 	
 	len = cio_read(cio, 2);		/* Lcoc */
+  (void)len;
 	compno = cio_read(cio, image->numcomps <= 256 ? 1 : 2);	/* Ccoc */
+  if (compno >= image->numcomps) {
+    opj_event_msg(j2k->cinfo, EVT_ERROR,
+      "bad component number in COC (%d out of a maximum of %d)\n",
+      compno, image->numcomps);
+    return;
+  }
 	tcp->tccps[compno].csty = cio_read(cio, 1);	/* Scoc */
 	j2k_read_cox(j2k, compno);
 }
@@ -893,6 +942,8 @@ static void j2k_read_qcx(opj_j2k_t *j2k, int compno, int len) {
 		opj_event_msg(j2k->cinfo, EVT_WARNING ,
 					"bad number of subbands in Sqcx (%d) regarding to J2K_MAXBANDS (%d) \n"
 				    "- limiting number of bands to J2K_MAXBANDS and try to move to the next markers\n", numbands, J2K_MAXBANDS);
+    /* edf_c2_1013627.jp2 */
+    numbands = 1;
 	}
 
 #endif /* USE_JPWL */
@@ -1004,9 +1055,16 @@ static void j2k_read_qcc(opj_j2k_t *j2k) {
 
 		/* keep your private count of tiles */
 		backup_compno++;
-	};
+	}
 #endif /* USE_JPWL */
 
+  if ((compno < 0) || (compno >= numcomp)) {
+    opj_event_msg(j2k->cinfo, EVT_ERROR,
+      "bad component number in QCC (%d out of a maximum of %d)\n",
+      compno, j2k->image->numcomps);
+    return;
+  }
+
 	j2k_read_qcx(j2k, compno, len - 2 - (numcomp <= 256 ? 1 : 2));
 }
 
@@ -1052,6 +1110,15 @@ static void j2k_read_poc(opj_j2k_t *j2k) {
 	len = cio_read(cio, 2);		/* Lpoc */
 	numpchgs = (len - 2) / (5 + 2 * (numcomps <= 256 ? 1 : 2));
 	
+  if( numpchgs >= 32 )
+    {
+    /* edf_c2_1103421.jp2 */
+    opj_event_msg(j2k->cinfo, EVT_ERROR,
+      "bad number of POCS (%d out of a maximum of %d)\n",
+      numpchgs, 32);
+    numpchgs = 0;
+    }
+
 	for (i = old_poc; i < numpchgs + old_poc; i++) {
 		opj_poc_t *poc;
 		poc = &tcp->pocs[i];
@@ -1074,9 +1141,12 @@ static void j2k_read_crg(opj_j2k_t *j2k) {
 	int numcomps = j2k->image->numcomps;
 	
 	len = cio_read(cio, 2);			/* Lcrg */
+  (void)len;
 	for (i = 0; i < numcomps; i++) {
 		Xcrg_i = cio_read(cio, 2);	/* Xcrg_i */
+    (void)Xcrg_i;
 		Ycrg_i = cio_read(cio, 2);	/* Ycrg_i */
+    (void)Ycrg_i;
 	}
 }
 
@@ -1088,13 +1158,16 @@ static void j2k_read_tlm(opj_j2k_t *j2k) {
 	
 	len = cio_read(cio, 2);		/* Ltlm */
 	Ztlm = cio_read(cio, 1);	/* Ztlm */
+  (void)Ztlm;
 	Stlm = cio_read(cio, 1);	/* Stlm */
 	ST = ((Stlm >> 4) & 0x01) + ((Stlm >> 4) & 0x02);
 	SP = (Stlm >> 6) & 0x01;
 	tile_tlm = (len - 4) / ((SP + 1) * 2 + ST);
 	for (i = 0; i < tile_tlm; i++) {
 		Ttlm_i = cio_read(cio, ST);	/* Ttlm_i */
+    (void)Ttlm_i;
 		Ptlm_i = cio_read(cio, SP ? 4 : 2);	/* Ptlm_i */
+    (void)Ptlm_i;
 	}
 }
 
@@ -1105,6 +1178,7 @@ static void j2k_read_plm(opj_j2k_t *j2k) {
 
 	len = cio_read(cio, 2);		/* Lplm */
 	Zplm = cio_read(cio, 1);	/* Zplm */
+  (void)Zplm;
 	len -= 3;
 	while (len > 0) {
 		Nplm = cio_read(cio, 4);		/* Nplm */
@@ -1130,6 +1204,7 @@ static void j2k_read_plt(opj_j2k_t *j2k) {
 	
 	len = cio_read(cio, 2);		/* Lplt */
 	Zplt = cio_read(cio, 1);	/* Zplt */
+  (void)Zplt;
 	for (i = len - 3; i > 0; i--) {
 		add = cio_read(cio, 1);
 		packet_len = (packet_len << 7) + add;	/* Iplt_i */
@@ -1277,6 +1352,7 @@ static void j2k_read_sot(opj_j2k_t *j2k) {
 	opj_cio_t *cio = j2k->cio;
 
 	len = cio_read(cio, 2);
+  (void)len;
 	tileno = cio_read(cio, 2);
 
 #ifdef USE_JPWL
@@ -1513,26 +1589,14 @@ static void j2k_read_sod(opj_j2k_t *j2k) {
 		truncate = 1;		/* Case of a truncate codestream */
 	}	
 
-   {/* chop padding bytes: */
-    unsigned char *s, *e; 
-
-    s = cio_getbp(cio);
-    e = s + len;
-
-  if(len > 8) s = e - 8;
-
-  if(e[-2] == 0x00 && e[-1] == 0x00) /* padding bytes */
-  {
-	while(e > s)
- {
-	if(e[-2] == 0xff && e[-1] == 0xd9)	break;
-  --len; --e; truncate = 1;
- }
-  }
-   }
-
 	data = j2k->tile_data[curtileno];
+  data_ptr = data; /* store in case of failure */
 	data = (unsigned char*) opj_realloc(data, (j2k->tile_len[curtileno] + len) * sizeof(unsigned char));
+  if( data == NULL ) {
+    opj_event_msg(j2k->cinfo, EVT_ERROR, "Could not reallocated\n" );
+    opj_free( data_ptr );
+    return;
+    }
 
 	data_ptr = data + j2k->tile_len[curtileno];
 	for (i = 0; i < len; i++) {
@@ -1572,8 +1636,10 @@ static void j2k_read_rgn(opj_j2k_t *j2k) {
 	int numcomps = j2k->image->numcomps;
 
 	len = cio_read(cio, 2);										/* Lrgn */
+  (void)len;
 	compno = cio_read(cio, numcomps <= 256 ? 1 : 2);			/* Crgn */
 	roisty = cio_read(cio, 1);									/* Srgn */
+  (void)roisty;
 
 #ifdef USE_JPWL
 	if (j2k->cp->correct) {
@@ -1590,6 +1656,13 @@ static void j2k_read_rgn(opj_j2k_t *j2k) {
 	};
 #endif /* USE_JPWL */
 
+  if (compno >= numcomps) {
+    opj_event_msg(j2k->cinfo, EVT_ERROR,
+      "bad component number in RGN (%d out of a maximum of %d)\n",
+      compno, j2k->image->numcomps);
+    return;
+  }
+
 	tcp->tccps[compno].roishift = cio_read(cio, 1);				/* SPrgn */
 }
 
@@ -1620,6 +1693,7 @@ static void j2k_read_eoc(opj_j2k_t *j2k) {
 			{
 				tileno = j2k->cp->tileno[i];
 				success = tcd_decode_tile(tcd, j2k->tile_data[tileno], j2k->tile_len[tileno], tileno, j2k->cstr_info);
+        assert( tileno != -1 );
 				opj_free(j2k->tile_data[tileno]);
 				j2k->tile_data[tileno] = NULL;
 				tcd_free_decode_tile(tcd, i);
@@ -1799,8 +1873,11 @@ void j2k_destroy_decompress(opj_j2k_t *j2k) {
         if(j2k->cp != NULL) {
             for (i = 0; i < j2k->cp->tileno_size; i++) {
                 int tileno = j2k->cp->tileno[i];
-                opj_free(j2k->tile_data[tileno]);
-                j2k->tile_data[tileno] = NULL;
+                if( tileno != -1 )
+                  {
+                  opj_free(j2k->tile_data[tileno]);
+                  j2k->tile_data[tileno] = NULL;
+                  }
             }
         }
 
@@ -1964,6 +2041,11 @@ opj_image_t* j2k_decode(opj_j2k_t *j2k, opj_cio_t *cio, opj_codestream_info_t *c
 	}
 	if (j2k->state == J2K_STATE_NEOC) {
 		j2k_read_eoc(j2k);
+		/* Check one last time for errors during decoding before returning */
+		if (j2k->state & J2K_STATE_ERR) {
+			opj_image_destroy(image);
+			return NULL;
+		}
 	}
 
 	if (j2k->state != J2K_STATE_MT) {

libopenjpeg/jp2.c

@@ -30,6 +30,7 @@
  * POSSIBILITY OF SUCH DAMAGE.
  */
 #include "opj_includes.h"
+#include <assert.h>
 
 /** @defgroup JP2 JP2 - JPEG-2000 file format reader/writer */
 /*@{*/
@@ -172,6 +173,9 @@ static opj_bool jp2_read_boxhdr(opj_common_ptr cinfo, opj_cio_t *cio, opj_jp2_bo
 	}
 	else if (box->length == 0) {
 		box->length = cio_numbytesleft(cio) + 8;
+	} else if (box->length < 0) {
+		opj_event_msg(cinfo, EVT_ERROR, "Integer overflow in box->length\n");
+		return OPJ_FALSE; /* TODO: actually check jp2_read_boxhdr's return value */
 	}
 	
 	return OPJ_TRUE;
@@ -518,10 +522,8 @@ static opj_bool jp2_read_cmap(opj_jp2_t *jp2, opj_cio_t *cio,
 static void jp2_apply_cdef(opj_image_t *image, opj_jp2_color_t *color)
 {
 	opj_jp2_cdef_info_t *info;
-	int color_space;
 	unsigned short i, n, cn, typ, asoc, acn;
 
-	color_space = image->color_space;
 	info = color->jp2_cdef->info;
 	n = color->jp2_cdef->n;
 
@@ -531,6 +533,7 @@ static void jp2_apply_cdef(opj_image_t *image, opj_jp2_color_t *color)
 	if((asoc = info[i].asoc) == 0) continue;
 
 	cn = info[i].cn; typ = info[i].typ; acn = asoc - 1;
+  (void)typ;
 
 	if(cn != acn)
   {
@@ -654,6 +657,7 @@ opj_bool jp2_read_jp2h(opj_jp2_t *jp2, opj_cio_t *cio, opj_jp2_color_t *color)
         opj_event_msg(cinfo, EVT_ERROR, "Expected JP2H Marker\n");
         return OPJ_FALSE;
         }
+	  if (box.length <= 8) return OPJ_FALSE;
       cio_skip(cio, box.length - 8);
 
       if(cio->bp >= cio->end) return OPJ_FALSE;
@@ -679,6 +683,7 @@ opj_bool jp2_read_jp2h(opj_jp2_t *jp2, opj_cio_t *cio, opj_jp2_color_t *color)
       {
       if( !jp2_read_colr(jp2, cio, &box, color))
         {
+        if (box.length <= 8) return OPJ_FALSE;
         cio_seek(cio, box.init_pos + 8);
         cio_skip(cio, box.length - 8);
         }
@@ -689,6 +694,7 @@ opj_bool jp2_read_jp2h(opj_jp2_t *jp2, opj_cio_t *cio, opj_jp2_color_t *color)
       {
       if( !jp2_read_cdef(jp2, cio, &box, color))
         {
+        if (box.length <= 8) return OPJ_FALSE;
         cio_seek(cio, box.init_pos + 8);
         cio_skip(cio, box.length - 8);
         }
@@ -699,6 +705,7 @@ opj_bool jp2_read_jp2h(opj_jp2_t *jp2, opj_cio_t *cio, opj_jp2_color_t *color)
       {
       if( !jp2_read_pclr(jp2, cio, &box, color))
         {
+        if (box.length <= 8) return OPJ_FALSE;
         cio_seek(cio, box.init_pos + 8);
         cio_skip(cio, box.length - 8);
         }
@@ -709,12 +716,14 @@ opj_bool jp2_read_jp2h(opj_jp2_t *jp2, opj_cio_t *cio, opj_jp2_color_t *color)
       {
       if( !jp2_read_cmap(jp2, cio, &box, color))
         {
+        if (box.length <= 8) return OPJ_FALSE;
         cio_seek(cio, box.init_pos + 8);
         cio_skip(cio, box.length - 8);
         }
       if( jp2_read_boxhdr(cinfo, cio, &box) == OPJ_FALSE ) return OPJ_FALSE;
       continue;
       }
+    if (box.length <= 8) return OPJ_FALSE;
     cio_seek(cio, box.init_pos + 8);
     cio_skip(cio, box.length - 8);
     if( jp2_read_boxhdr(cinfo, cio, &box) == OPJ_FALSE ) return OPJ_FALSE;
@@ -728,6 +737,84 @@ opj_bool jp2_read_jp2h(opj_jp2_t *jp2, opj_cio_t *cio, opj_jp2_color_t *color)
 
 }/* jp2_read_jp2h() */
 
+static opj_bool opj_jp2_check_color(opj_image_t *image, opj_jp2_color_t *color, opj_common_ptr cinfo)
+{
+	int i;
+
+	/* testcase 4149.pdf.SIGSEGV.cf7.3501 */
+	if (color->jp2_cdef) {
+		opj_jp2_cdef_info_t *info = color->jp2_cdef->info;
+		int n = color->jp2_cdef->n;
+
+		for (i = 0; i < n; i++) {
+			if (info[i].cn >= image->numcomps) {
+				opj_event_msg(cinfo, EVT_ERROR, "Invalid component index %d (>= %d).\n", info[i].cn, image->numcomps);
+				return OPJ_FALSE;
+			}
+			if (info[i].asoc > 0 && (info[i].asoc - 1) >= image->numcomps) {
+				opj_event_msg(cinfo, EVT_ERROR, "Invalid component index %d (>= %d).\n", info[i].asoc - 1, image->numcomps);
+				return OPJ_FALSE;
+			}
+		}
+	}
+
+	/* testcases 451.pdf.SIGSEGV.f4c.3723, 451.pdf.SIGSEGV.5b5.3723 and
+	   66ea31acbb0f23a2bbc91f64d69a03f5_signal_sigsegv_13937c0_7030_5725.pdf */
+	if (color->jp2_pclr && color->jp2_pclr->cmap) {
+		int nr_channels = color->jp2_pclr->nr_channels;
+		opj_jp2_cmap_comp_t *cmap = color->jp2_pclr->cmap;
+		opj_bool *pcol_usage, is_sane = OPJ_TRUE;
+
+		/* verify that all original components match an existing one */
+		for (i = 0; i < nr_channels; i++) {
+			if (cmap[i].cmp >= image->numcomps) {
+				opj_event_msg(cinfo, EVT_ERROR, "Invalid component index %d (>= %d).\n", cmap[i].cmp, image->numcomps);
+				is_sane = OPJ_FALSE;
+			}
+		}
+
+		pcol_usage = opj_calloc(nr_channels, sizeof(opj_bool));
+		if (!pcol_usage) {
+			opj_event_msg(cinfo, EVT_ERROR, "Unexpected OOM.\n");
+			return OPJ_FALSE;
+		}
+		/* verify that no component is targeted more than once */
+		for (i = 0; i < nr_channels; i++) {
+      int pcol = cmap[i].pcol;
+      assert(cmap[i].mtyp == 0 || cmap[i].mtyp == 1);
+			if (pcol >= nr_channels) {
+				opj_event_msg(cinfo, EVT_ERROR, "Invalid component/palette index for direct mapping %d.\n", pcol);
+				is_sane = OPJ_FALSE;
+			}
+			else if (pcol_usage[pcol] && cmap[i].mtyp == 1) {
+				opj_event_msg(cinfo, EVT_ERROR, "Component %d is mapped twice.\n", pcol);
+				is_sane = OPJ_FALSE;
+			}
+      else if (cmap[i].mtyp == 0 && cmap[i].pcol != 0) {
+        /* I.5.3.5 PCOL: If the value of the MTYP field for this channel is 0, then
+         * the value of this field shall be 0. */
+				opj_event_msg(cinfo, EVT_ERROR, "Direct use at #%d however pcol=%d.\n", i, pcol);
+				is_sane = OPJ_FALSE;
+      }
+			else
+				pcol_usage[pcol] = OPJ_TRUE;
+		}
+		/* verify that all components are targeted at least once */
+		for (i = 0; i < nr_channels; i++) {
+			if (!pcol_usage[i] && cmap[i].mtyp != 0) {
+				opj_event_msg(cinfo, EVT_ERROR, "Component %d doesn't have a mapping.\n", i);
+				is_sane = OPJ_FALSE;
+			}
+		}
+		opj_free(pcol_usage);
+		if (!is_sane) {
+			return OPJ_FALSE;
+		}
+	}
+
+	return OPJ_TRUE;
+}
+
 opj_image_t* opj_jp2_decode(opj_jp2_t *jp2, opj_cio_t *cio, 
 	opj_codestream_info_t *cstr_info) 
 {
@@ -761,6 +848,10 @@ opj_image_t* opj_jp2_decode(opj_jp2_t *jp2, opj_cio_t *cio,
    }
    
     if (!jp2->ignore_pclr_cmap_cdef){
+	    if (!opj_jp2_check_color(image, &color, cinfo)) {
+        opj_event_msg(cinfo, EVT_ERROR, "Failed to decode PCRL box\n");
+		    return NULL;
+	    }
 
     /* Set Image Color Space */
 	if (jp2->enumcs == 16)
@@ -856,6 +947,14 @@ static opj_bool jp2_read_ftyp(opj_jp2_t *jp2, opj_cio_t *cio) {
 	jp2->brand = cio_read(cio, 4);		/* BR */
 	jp2->minversion = cio_read(cio, 4);	/* MinV */
 	jp2->numcl = (box.length - 16) / 4;
+
+  /* edf_c2_1673169.jp2 */
+	if (cio_numbytesleft(cio) < ((int)jp2->numcl * 4)) {
+		opj_event_msg(cinfo, EVT_ERROR, "Not enough bytes in FTYP Box "
+				"(expected %d, but only %d left)\n",
+				((int)jp2->numcl * 4), cio_numbytesleft(cio));
+		return OPJ_FALSE;
+	}
 	jp2->cl = (unsigned int *) opj_malloc(jp2->numcl * sizeof(unsigned int));
 
 	for (i = 0; i < (int)jp2->numcl; i++) {
@@ -910,12 +1009,14 @@ static opj_bool jp2_read_jp2c(opj_jp2_t *jp2, opj_cio_t *cio, unsigned int *j2k_
   }
 	do {
 		if(JP2_JP2C != box.type) {
+			if (box.length <= 8) return OPJ_FALSE;
 			cio_skip(cio, box.length - 8);
 			if( jp2_read_boxhdr(cinfo, cio, &box) == OPJ_FALSE ) return OPJ_FALSE;
 		}
 	} while(JP2_JP2C != box.type);
 
 	*j2k_codestream_offset = cio_tell(cio);
+	if (box.length <= 8) return OPJ_FALSE;
 	*j2k_codestream_length = box.length - 8;
 
 	return OPJ_TRUE;
@@ -1083,6 +1184,7 @@ void jp2_setup_decoder(opj_jp2_t *jp2, opj_dparameters_t *parameters) {
 opj_jp2_t* jp2_create_compress(opj_common_ptr cinfo) {
 	opj_jp2_t *jp2 = (opj_jp2_t*)opj_malloc(sizeof(opj_jp2_t));
 	if(jp2) {
+		memset(jp2, 0, sizeof(opj_jp2_t));
 		jp2->cinfo = cinfo;
 		/* create the J2K codec */
 		jp2->j2k = j2k_create_compress(cinfo);

libopenjpeg/jpwl/Makefile.am

@@ -18,7 +18,6 @@ OPJ_SRC = \
 ../pi.c \
 ../raw.c \
 ../t1.c \
-../t1_generate_luts.c \
 ../t2.c \
 ../tcd.c \
 ../tgt.c \

libopenjpeg/opj_includes.h

@@ -89,18 +89,17 @@ Most compilers implement their own version of this keyword ...
 /* MSVC and Borland C do not have lrintf */
 #if defined(_MSC_VER) || defined(__BORLANDC__)
 static INLINE long lrintf(float f){
-#ifdef _M_X64
-    return (long)((f>0.0f) ? (f + 0.5f):(f -0.5f));
-#else
-    int i;
+#ifdef _M_IX86
+    long int i;
  
     _asm{
         fld f
         fistp i
     };
- 
     return i;
-#endif
+#else
+    return (long)((f>0.0f) ? (f + 0.5f):(f -0.5f));
+#endif /* _M_IX86 */
 }
 #endif
 

libopenjpeg/t1_generate_luts.c

@@ -194,7 +194,7 @@ int main(){
 
 	printf("/* This file was automatically generated by t1_generate_luts.c */\n\n");
 
-	// lut_ctxno_zc
+	/* lut_ctxno_zc */
 	for (j = 0; j < 4; ++j) {
 		for (i = 0; i < 256; ++i) {
 			int orient = j;
@@ -215,7 +215,7 @@ int main(){
 	}
 	printf("%i\n};\n\n", lut_ctxno_zc[1023]);
 
-	// lut_ctxno_sc
+	/* lut_ctxno_sc */
 	printf("static char lut_ctxno_sc[256] = {\n  ");
 	for (i = 0; i < 255; ++i) {
 		printf("0x%x, ", t1_init_ctxno_sc(i << 4));
@@ -224,7 +224,7 @@ int main(){
 	}
 	printf("0x%x\n};\n\n", t1_init_ctxno_sc(255 << 4));
 
-	// lut_spb
+	/* lut_spb */
 	printf("static char lut_spb[256] = {\n  ");
 	for (i = 0; i < 255; ++i) {
 		printf("%i, ", t1_init_spb(i << 4));

libopenjpeg/t2.c

@@ -30,6 +30,7 @@
  */
 
 #include "opj_includes.h"
+#include <assert.h>
 
 /** @defgroup T2 T2 - Implementation of a tier-2 coding */
 /*@{*/
@@ -340,13 +341,15 @@ static int t2_decode_packet(opj_t2_t* t2, unsigned char *src, int len, opj_tcd_t
 	int precno = pi->precno;	/* precinct value */
 	int layno  = pi->layno;		/* quality layer value */
 
-	opj_tcd_resolution_t* res = &tile->comps[compno].resolutions[resno];
-
 	unsigned char *hd = NULL;
 	int present;
 	
 	opj_bio_t *bio = NULL;	/* BIO component */
-	
+
+	opj_tcd_resolution_t* res;
+	assert(&tile->comps[compno] != NULL);
+	res = &tile->comps[compno].resolutions[resno];
+
 	if (layno == 0) {
 		for (bandno = 0; bandno < res->numbands; bandno++) {
 			opj_tcd_band_t *band = &res->bands[bandno];

libopenjpeg/tcd.c

@@ -32,6 +32,7 @@
 
 #define _ISOC99_SOURCE /* lrintf is C99 */
 #include "opj_includes.h"
+#include <assert.h>
 
 void tcd_dump(FILE *fd, opj_tcd_t *tcd, opj_tcd_image_t * img) {
 	int tileno, compno, resno, bandno, precno;/*, cblkno;*/
@@ -250,7 +251,9 @@ void tcd_malloc_encode(opj_tcd_t *tcd, opj_image_t * image, opj_cp_t * cp, int c
 					cbgwidthexpn = pdx - 1;
 					cbgheightexpn = pdy - 1;
 				}
-				
+        (void)brcbgyend;
+        (void)brcbgxend;
+
 				cblkwidthexpn = int_min(tccp->cblkw, cbgwidthexpn);
 				cblkheightexpn = int_min(tccp->cblkh, cbgheightexpn);
 				
@@ -512,6 +515,8 @@ void tcd_init_encode(opj_tcd_t *tcd, opj_image_t * image, opj_cp_t * cp, int cur
 					cbgwidthexpn = pdx - 1;
 					cbgheightexpn = pdy - 1;
 				}
+        (void)brcbgyend;
+        (void)brcbgxend;
 				
 				cblkwidthexpn = int_min(tccp->cblkw, cbgwidthexpn);
 				cblkheightexpn = int_min(tccp->cblkh, cbgheightexpn);
@@ -760,6 +765,8 @@ void tcd_malloc_decode_tile(opj_tcd_t *tcd, opj_image_t * image, opj_cp_t * cp,
 				cbgwidthexpn = pdx - 1;
 				cbgheightexpn = pdy - 1;
 			}
+      (void)brcbgyend;
+      (void)brcbgxend;
 			
 			cblkwidthexpn = int_min(tccp->cblkw, cbgwidthexpn);
 			cblkheightexpn = int_min(tccp->cblkh, cbgheightexpn);
@@ -1381,6 +1388,7 @@ opj_bool tcd_decode_tile(opj_tcd_t *tcd, unsigned char *src, int len, int tileno
 	if (l == -999) {
 		eof = 1;
 		opj_event_msg(tcd->cinfo, EVT_ERROR, "tcd_decode: incomplete bistream\n");
+    return OPJ_FALSE;
 	}
 	
 	/*------------------TIER1-----------------*/
@@ -1401,6 +1409,7 @@ opj_bool tcd_decode_tile(opj_tcd_t *tcd, unsigned char *src, int len, int tileno
         if (tilec->data == NULL)
         {
             opj_event_msg(tcd->cinfo, EVT_ERROR, "Out of memory\n");
+            t1_destroy(t1);
             return OPJ_FALSE;
         }
 
@@ -1447,6 +1456,13 @@ opj_bool tcd_decode_tile(opj_tcd_t *tcd, unsigned char *src, int len, int tileno
 		int n = (tile->comps[0].x1 - tile->comps[0].x0) * (tile->comps[0].y1 - tile->comps[0].y0);
 
 		if (tile->numcomps >= 3 ){
+      /* testcase 1336.pdf.asan.47.376 */
+      if ((tile->comps[0].x1 - tile->comps[0].x0) * (tile->comps[0].y1 - tile->comps[0].y0) < n ||
+        (  tile->comps[1].x1 - tile->comps[1].x0) * (tile->comps[1].y1 - tile->comps[1].y0) < n ||
+        (  tile->comps[2].x1 - tile->comps[2].x0) * (tile->comps[2].y1 - tile->comps[2].y0) < n) {
+        opj_event_msg(tcd->cinfo, EVT_ERROR, "Tiles don't all have the same dimension. Skip the MCT step.\n");
+        return OPJ_FALSE;
+      }
 			if (tcd->tcp->tccps[0].qmfbid == 1) {
 				mct_decode(
 						tile->comps[0].data,
@@ -1478,10 +1494,19 @@ opj_bool tcd_decode_tile(opj_tcd_t *tcd, unsigned char *src, int len, int tileno
 		int tw = tilec->x1 - tilec->x0;
 		int w = imagec->w;
 
+		int i, j;
 		int offset_x = int_ceildivpow2(imagec->x0, imagec->factor);
 		int offset_y = int_ceildivpow2(imagec->y0, imagec->factor);
+    /* NR-DEC-2977.pdf.asan.67.2198.jp2-52-decode */
+    if( res->x0 - offset_x < 0 || res->x1 - offset_x < 0
+     || res->y0 - offset_y < 0 || res->y1 - offset_y < 0 )
+      {
+      opj_event_msg(tcd->cinfo, EVT_ERROR, "Impossible offsets %d / %d\n", offset_x, offset_y);
+      return OPJ_FALSE;
+      }
+    assert( 0 <= res->x0 - offset_x && 0 <= res->x1 - offset_x );
+    assert( 0 <= res->y0 - offset_y && 0 <= res->y1 - offset_y );
 
-		int i, j;
 		if(!imagec->data){
 			imagec->data = (int*) opj_malloc(imagec->w * imagec->h * sizeof(int));
 		}
@@ -1495,6 +1520,7 @@ opj_bool tcd_decode_tile(opj_tcd_t *tcd, unsigned char *src, int len, int tileno
 				for(i = res->x0; i < res->x1; ++i) {
 					int v = tilec->data[i - res->x0 + (j - res->y0) * tw];
 					v += adjust;
+          /*assert( (i - offset_x) + (j - offset_y) * w >= 0 );*/
 					imagec->data[(i - offset_x) + (j - offset_y) * w] = int_clamp(v, min, max);
 				}
 			}
@@ -1504,6 +1530,7 @@ opj_bool tcd_decode_tile(opj_tcd_t *tcd, unsigned char *src, int len, int tileno
 					float tmp = ((float*)tilec->data)[i - res->x0 + (j - res->y0) * tw];
 					int v = lrintf(tmp);
 					v += adjust;
+          /*assert( (i - offset_x) + (j - offset_y) * w >= 0 );*/
 					imagec->data[(i - offset_x) + (j - offset_y) * w] = int_clamp(v, min, max);
 				}
 			}

m4/opj_check_lib.m4

@@ -21,16 +21,28 @@ __opj_func=$4
 __opj_have_dep="no"
 
 save_CPPFLAGS=${CPPFLAGS}
-save_LDFLAGS=${LDFLAGS}
 save_LIBS=${LIBS}
 
-if test "x${__opj_prefix}" = "x" ; then
+if test "x$UP[_CFLAGS]" != "x"; then
    CPPFLAGS="${CPPFLAGS} $UP[_CFLAGS]"
-   LDFLAGS="${LDFLAGS} $UP[_LIBS]"
 else
-   CPPFLAGS="${CPPFLAGS} -I${__opj_prefix}/include"
-   LDFLAGS="${LDFLAGS} -L${__opj_prefix}/lib"
-   LIBS="${LIBS} -l${__opj_lib}"
+   if test "x${__opj_prefix}" != "x" ; then
+     __opj_CPPFLAGS="-I${__opj_prefix}/include"
+   else
+     __opj_CPPFLAGS=""
+   fi
+   CPPFLAGS="${CPPFLAGS} ${__opj_CPPFLAGS}"
+fi
+
+if test "x$UP[_LIBS]" != "x"; then
+   LIBS="${LIBS} $UP[_LIBS]"
+else
+   if test "x${__opj_prefix}" != "x" ; then
+     __opj_LIBS="-L${__opj_prefix}/lib -l${__opj_lib}"
+   else
+     __opj_LIBS="-l${__opj_lib}"
+   fi
+   LIBS="${LIBS} ${__opj_LIBS}"
 fi
 
 AC_LINK_IFELSE(
@@ -45,7 +57,6 @@ ${__opj_func}();
        [__opj_have_dep="no"])
 
 CPPFLAGS=${save_CPPFLAGS}
-LDFLAGS=${save_LDFLAGS}
 LIBS=${save_LIBS}
 
 if test "x${__opj_prefix}" = "x" ; then
@@ -55,12 +66,12 @@ else
 fi
 AC_MSG_RESULT([${__opj_have_dep}])
 
-if test "x${__opj_have_dep}" = "xyes" && ! test "x${__opj_prefix}" = "x"; then
+if test "x${__opj_have_dep}" = "xyes"; then
    if test "x${UP[]_CFLAGS}" = "x" ; then
-      UP[]_CFLAGS="-I${__opj_prefix}/include"
+      UP[]_CFLAGS="${__opj_CPPFLAGS}"
    fi
    if test "x${UP[]_LIBS}" = "x" ; then
-      UP[]_LIBS="-L${__opj_prefix}/lib -l${__opj_lib}"
+      UP[]_LIBS="${__opj_LIBS}"
    fi
 fi
 

opj_config.h.cmake.in

@@ -19,6 +19,7 @@
 #cmakedefine HAVE_LIBLCMS2
 #cmakedefine HAVE_LCMS1_H
 #cmakedefine HAVE_LCMS2_H
+#cmakedefine USE_SYSTEM_GETOPT
 
 /* Byte order.  */
 /* All compilers that support Mac OS X define either __BIG_ENDIAN__ or

tests/CMakeLists.txt

@@ -11,14 +11,15 @@ INCLUDE_DIRECTORIES(
 # First thing define the common source:
 SET(comparePGXimages_SRCS comparePGXimages.c
   ${OPENJPEG_SOURCE_DIR}/applications/codec/convert.c
-  ${OPENJPEG_SOURCE_DIR}/applications/common/opj_getopt.c
   )
+SET(compare_dump_files_SRCS compare_dump_files.c)
+SET(compareRAWimages_SRCS compareRAWimages.c)
 
-SET(compare_dump_files_SRCS compare_dump_files.c
-  ${OPENJPEG_SOURCE_DIR}/applications/common/opj_getopt.c)
-
-SET(compareRAWimages_SRCS compareRAWimages.c
-  ${OPENJPEG_SOURCE_DIR}/applications/common/opj_getopt.c)
+if(NOT USE_SYSTEM_GETOPT)
+  list(APPEND comparePGXimages_SRCS ${OPENJPEG_SOURCE_DIR}/applications/common/opj_getopt.c)
+  list(APPEND compare_dump_files_SRCS ${OPENJPEG_SOURCE_DIR}/applications/common/opj_getopt.c)
+  list(APPEND compareRAWimages_SRCS ${OPENJPEG_SOURCE_DIR}/applications/common/opj_getopt.c)
+endif()
 
 ADD_EXECUTABLE(comparePGXimages ${comparePGXimages_SRCS})
 TARGET_LINK_LIBRARIES(comparePGXimages
@@ -51,7 +52,7 @@ IF(BUILD_JPIP)
     SET(s "${JPIP_SERVER}?target=16.jp2&fsiz=170,170&cnew=http&type=jpp-stream")
     SET(p "${CMAKE_CURRENT_BINARY_DIR}/jpip.dat")
     SET(md5 "62b00c620fb0a600c5ffd413cada4674")
-    ADD_TEST(TestJPIP1 ${CMAKE_COMMAND} -DD_URL:STRING=${s} -DD_FILE:PATH=${p}
+    ADD_TEST(NAME TestJPIP1 COMMAND ${CMAKE_COMMAND} -DD_URL:STRING=${s} -DD_FILE:PATH=${p}
       -DEXPECTED_MD5=${md5} -P ${PROJECT_SOURCE_DIR}/CMake/JPIPTestDriver.cmake)
   ENDIF(JPIP_SERVER)
 ENDIF(BUILD_JPIP)

tests/conformance/CMakeLists.txt

@@ -11,9 +11,9 @@ SET(INPUT_CONF ${OPJ_DATA_ROOT}/input/conformance)
 # List of components by file (normaly p0_13.j2k have 257 components but for this 
 #set of test we consider only 4)
 SET( CP0_nbC_list "not_used;1;1;1;3;4;4;3;3;1;3;1;1;4;3;1;1")
-SET( CP0_ignore_list "not_used;0;0;1;1;1;1;1;1;0;1;0;0;1;1;1;0")
+SET( CP0_ignore_list "not_used;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0")
 SET( CP1_nbC_list "not_used;1;3;4;1;3;3;2")
-SET( CP1_ignore_list "not_used;0;1;1;0;1;1;1")
+SET( CP1_ignore_list "not_used;0;0;0;0;0;0;0")
 
 SET(COMMENTCODEVAR FALSE)
 
@@ -45,7 +45,9 @@ IF(ignore_test_value EQUAL 0)
   
   # Get corresponding tests parameters
   list(GET C0P0_ResFactor_list ${numFileC0P0}  ResFactor)
-  list(GET CP0_nbC_list ${numFileC0P0}  nbComponents)
+  #For Class-0 testing, we always focus on the first component only
+  #list(GET CP0_nbC_list ${numFileC0P0}  nbComponents)
+  set( nbComponents "1")
   list(GET C0P0_PEAK_list ${numFileC0P0}  PEAK_limit)
   list(GET C0P0_MSE_list ${numFileC0P0}  MSE_limit)
   
@@ -54,15 +56,15 @@ IF(ignore_test_value EQUAL 0)
     get_filename_component(filenameRefSub ${filenameRef} NAME_WE)
     #r = 0
     
-    ADD_TEST(ETS-C0P0-${filenameInput}-r0-decode 
-        ${EXECUTABLE_OUTPUT_PATH}/j2k_to_image 
+    ADD_TEST(NAME ETS-C0P0-${filenameInput}-r0-decode 
+        COMMAND j2k_to_image 
         -i ${INPUT_CONF}/${filenameInput}
         -o ${TEMP}/c0${filenameInput}-r0.pgx
         -r 0
         )
      
-    ADD_TEST(ETS-C0P0-${filenameInput}-r0-compare2ref
-        ${EXECUTABLE_OUTPUT_PATH}/comparePGXimages
+    ADD_TEST(NAME ETS-C0P0-${filenameInput}-r0-compare2ref
+        COMMAND comparePGXimages
         -b ${BASELINE_CONF}/${filenameRefSub}r0.pgx
         -t ${TEMP}/c0${filenameInput}-r0.pgx
         -n ${nbComponents}
@@ -75,8 +77,8 @@ IF(ignore_test_value EQUAL 0)
                          PROPERTIES DEPENDS 
                          ETS-C0P0-${filenameInput}-r0-decode)    
                        
-    ADD_TEST(NR-C0P0-${filenameInput}-r0-compare2base
-        ${EXECUTABLE_OUTPUT_PATH}/comparePGXimages
+    ADD_TEST(NAME NR-C0P0-${filenameInput}-r0-compare2base
+        COMMAND comparePGXimages
         -b ${BASELINE_NR}/opj_${filenameRefSub}-r0.pgx
         -t ${TEMP}/c0${filenameInput}-r0.pgx
         -n ${nbComponents}
@@ -89,15 +91,15 @@ IF(ignore_test_value EQUAL 0)
                          ETS-C0P0-${filenameInput}-r0-decode)  
     
     #r = 1
-    ADD_TEST(ETS-C0P0-${filenameInput}-r1-decode
-        ${EXECUTABLE_OUTPUT_PATH}/j2k_to_image 
+    ADD_TEST(NAME ETS-C0P0-${filenameInput}-r1-decode
+        COMMAND j2k_to_image 
         -i ${INPUT_CONF}/${filenameInput}
         -o ${TEMP}/c0${filenameInput}-r1.pgx
         -r 1
         )
      
-    ADD_TEST(ETS-C0P0-${filenameInput}-r1-compare2ref
-        ${EXECUTABLE_OUTPUT_PATH}/comparePGXimages
+    ADD_TEST(NAME ETS-C0P0-${filenameInput}-r1-compare2ref
+        COMMAND comparePGXimages
         -b ${BASELINE_CONF}/${filenameRefSub}r1.pgx
         -t ${TEMP}/c0${filenameInput}-r1.pgx
         -n ${nbComponents}
@@ -110,8 +112,8 @@ IF(ignore_test_value EQUAL 0)
                          PROPERTIES DEPENDS 
                          ETS-C0P0-${filenameInput}-r1-decode)    
                        
-    ADD_TEST(NR-C0P0-${filenameInput}-r1-compare2base
-        ${EXECUTABLE_OUTPUT_PATH}/comparePGXimages
+    ADD_TEST(NAME NR-C0P0-${filenameInput}-r1-compare2base
+        COMMAND comparePGXimages
         -b ${BASELINE_NR}/opj_${filenameRefSub}-r1.pgx
         -t ${TEMP}/c0${filenameInput}-r1.pgx
         -n ${nbComponents}
@@ -125,15 +127,15 @@ IF(ignore_test_value EQUAL 0)
 
   ELSE(numFileC0P0 EQUAL 3 OR numFileC0P0 EQUAL 15)
   
-    ADD_TEST(ETS-C0P0-${filenameInput}-decode
-        ${EXECUTABLE_OUTPUT_PATH}/j2k_to_image 
+    ADD_TEST(NAME ETS-C0P0-${filenameInput}-decode
+        COMMAND j2k_to_image 
         -i ${INPUT_CONF}/${filenameInput}
         -o ${TEMP}/c0${filenameInput}.pgx
         -r ${ResFactor}
         )
    
-    ADD_TEST(ETS-C0P0-${filenameInput}-compare2ref
-        ${EXECUTABLE_OUTPUT_PATH}/comparePGXimages
+    ADD_TEST(NAME ETS-C0P0-${filenameInput}-compare2ref
+        COMMAND comparePGXimages
         -b ${BASELINE_CONF}/${filenameRef}
         -t ${TEMP}/c0${filenameInput}.pgx
         -n ${nbComponents}
@@ -146,8 +148,8 @@ IF(ignore_test_value EQUAL 0)
                          PROPERTIES DEPENDS 
                          ETS-C0P0-${filenameInput}-decode)    
                        
-    ADD_TEST(NR-C0P0-${filenameInput}-compare2base
-        ${EXECUTABLE_OUTPUT_PATH}/comparePGXimages
+    ADD_TEST(NAME NR-C0P0-${filenameInput}-compare2base
+        COMMAND comparePGXimages
         -b ${BASELINE_NR}/opj_${filenameRef}
         -t ${TEMP}/c0${filenameInput}.pgx
         -n ${nbComponents}
@@ -187,7 +189,9 @@ IF(ignore_test_value2 EQUAL 0)
 
   # Get corresponding tests parameters 
   list(GET C0P1_ResFactor_list ${numFileC0P1}  ResFactor)
-  list(GET CP1_nbC_list ${numFileC0P1}  nbComponents)
+  #For Class-0 testing, we always focus on the first component only
+  #list(GET CP0_nbC_list ${numFileC0P0}  nbComponents)
+  set( nbComponents "1")
   list(GET C0P1_PEAK_list ${numFileC0P1}  PEAK_limit)
   list(GET C0P1_MSE_list ${numFileC0P1}  MSE_limit) 
 
@@ -196,15 +200,15 @@ IF(ignore_test_value2 EQUAL 0)
     get_filename_component(filenameRefSub ${filenameRef} NAME_WE)
     
     #r = 0
-    ADD_TEST(ETS-C0P1-${filenameInput}-r0-decode 
-        ${EXECUTABLE_OUTPUT_PATH}/j2k_to_image 
+    ADD_TEST(NAME ETS-C0P1-${filenameInput}-r0-decode 
+        COMMAND j2k_to_image 
         -i ${INPUT_CONF}/${filenameInput}
         -o ${TEMP}/c0${filenameInput}-r0.pgx
         -r 0
         )
     
-    ADD_TEST(ETS-C0P1-${filenameInput}-r0-compare2ref
-        ${EXECUTABLE_OUTPUT_PATH}/comparePGXimages
+    ADD_TEST(NAME ETS-C0P1-${filenameInput}-r0-compare2ref
+        COMMAND comparePGXimages
         -b ${BASELINE_CONF}/${filenameRefSub}r0.pgx
         -t ${TEMP}/c0${filenameInput}-r0.pgx
         -n ${nbComponents}
@@ -217,8 +221,8 @@ IF(ignore_test_value2 EQUAL 0)
                          PROPERTIES DEPENDS 
                          ETS-C0P1-${filenameInput}-r0-decode)    
                        
-    ADD_TEST(NR-C0P1-${filenameInput}-r0-compare2base
-        ${EXECUTABLE_OUTPUT_PATH}/comparePGXimages
+    ADD_TEST(NAME NR-C0P1-${filenameInput}-r0-compare2base
+        COMMAND comparePGXimages
         -b ${BASELINE_NR}/opj_${filenameRefSub}-r0.pgx
         -t ${TEMP}/c0${filenameInput}-r0.pgx
         -n ${nbComponents}
@@ -231,15 +235,15 @@ IF(ignore_test_value2 EQUAL 0)
                          ETS-C0P1-${filenameInput}-r0-decode)
     
     #r = 3
-    ADD_TEST(ETS-C0P1-${filenameInput}-r3-decode
-        ${EXECUTABLE_OUTPUT_PATH}/j2k_to_image 
+    ADD_TEST(NAME ETS-C0P1-${filenameInput}-r3-decode
+        COMMAND j2k_to_image 
         -i ${INPUT_CONF}/${filenameInput}
         -o ${TEMP}/c0${filenameInput}-r3.pgx
         -r 3
         )
         
-    ADD_TEST(ETS-C0P1-${filenameInput}-r3-compare2ref
-        ${EXECUTABLE_OUTPUT_PATH}/comparePGXimages
+    ADD_TEST(NAME ETS-C0P1-${filenameInput}-r3-compare2ref
+        COMMAND comparePGXimages
         -b ${BASELINE_CONF}/${filenameRefSub}r3.pgx
         -t ${TEMP}/c0${filenameInput}-r3.pgx
         -n ${nbComponents}
@@ -252,8 +256,8 @@ IF(ignore_test_value2 EQUAL 0)
                          PROPERTIES DEPENDS 
                          ETS-C0P1-${filenameInput}-r3-decode)    
                        
-    ADD_TEST(NR-C0P1-${filenameInput}-r3-compare2base
-        ${EXECUTABLE_OUTPUT_PATH}/comparePGXimages
+    ADD_TEST(NAME NR-C0P1-${filenameInput}-r3-compare2base
+        COMMAND comparePGXimages
         -b ${BASELINE_NR}/opj_${filenameRefSub}-r3.pgx
         -t ${TEMP}/c0${filenameInput}-r3.pgx
         -n ${nbComponents}
@@ -267,15 +271,15 @@ IF(ignore_test_value2 EQUAL 0)
        
   ELSE(numFileC0P1 EQUAL 4)
 
-    ADD_TEST(ETS-C0P1-${filenameInput}-decode
-        ${EXECUTABLE_OUTPUT_PATH}/j2k_to_image 
+    ADD_TEST(NAME ETS-C0P1-${filenameInput}-decode
+        COMMAND j2k_to_image 
         -i ${INPUT_CONF}/${filenameInput}
         -o ${TEMP}/c0${filenameInput}.pgx
         -r ${ResFactor}
         )
             
-    ADD_TEST(ETS-C0P1-${filenameInput}-compare2ref
-        ${EXECUTABLE_OUTPUT_PATH}/comparePGXimages
+    ADD_TEST(NAME ETS-C0P1-${filenameInput}-compare2ref
+        COMMAND comparePGXimages
         -b ${BASELINE_CONF}/${filenameRef}
         -t ${TEMP}/c0${filenameInput}.pgx
         -n ${nbComponents}
@@ -288,8 +292,8 @@ IF(ignore_test_value2 EQUAL 0)
                          PROPERTIES DEPENDS 
                          ETS-C0P1-${filenameInput}-decode)    
                        
-    ADD_TEST(NR-C0P1-${filenameInput}-compare2base
-        ${EXECUTABLE_OUTPUT_PATH}/comparePGXimages
+    ADD_TEST(NAME NR-C0P1-${filenameInput}-compare2base
+        COMMAND comparePGXimages
         -b ${BASELINE_NR}/opj_${filenameRef}
         -t ${TEMP}/c0${filenameInput}.pgx
         -n ${nbComponents}
@@ -335,15 +339,15 @@ FOREACH(numFileC1P0 RANGE 1 16)
   list(GET C1P0_PEAK_list ${numFileC1P0}  PEAK_limit)
   list(GET C1P0_MSE_list ${numFileC1P0}  MSE_limit)
   
-  ADD_TEST(ETS-C1P0-${filenameInput}-decode
-      ${EXECUTABLE_OUTPUT_PATH}/j2k_to_image 
+  ADD_TEST(NAME ETS-C1P0-${filenameInput}-decode
+      COMMAND j2k_to_image 
       -i ${INPUT_CONF}/${filenameInput}
       -o ${TEMP}/c1${filenameInput}.pgx
       -r ${ResFactor}
       )
       
-  ADD_TEST(ETS-C1P0-${filenameInput}-compare2ref
-      ${EXECUTABLE_OUTPUT_PATH}/comparePGXimages
+  ADD_TEST(NAME ETS-C1P0-${filenameInput}-compare2ref
+      COMMAND comparePGXimages
      -b ${BASELINE_CONF}/${filenameRef}
      -t ${TEMP}/c1${filenameInput}.pgx
      -n ${nbComponents}
@@ -356,8 +360,8 @@ FOREACH(numFileC1P0 RANGE 1 16)
                        PROPERTIES DEPENDS 
                        ETS-C1P0-${filenameInput}-decode)    
                        
-  ADD_TEST(NR-C1P0-${filenameInput}-compare2base
-      ${EXECUTABLE_OUTPUT_PATH}/comparePGXimages
+  ADD_TEST(NAME NR-C1P0-${filenameInput}-compare2base
+      COMMAND comparePGXimages
      -b ${BASELINE_NR}/opj_${filenameRef}
      -t ${TEMP}/c1${filenameInput}.pgx
      -n ${nbComponents}
@@ -394,15 +398,15 @@ FOREACH(numFileC1P1 RANGE 1 7)
   list(GET C1P1_PEAK_list ${numFileC1P1}  PEAK_limit)
   list(GET C1P1_MSE_list ${numFileC1P1}  MSE_limit)
   
-  ADD_TEST(ETS-C1P1-${filenameInput}-decode
-      ${EXECUTABLE_OUTPUT_PATH}/j2k_to_image 
+  ADD_TEST(NAME ETS-C1P1-${filenameInput}-decode
+      COMMAND j2k_to_image 
       -i ${INPUT_CONF}/${filenameInput}
       -o ${TEMP}/c1${filenameInput}.pgx
       -r 0
       )
  
-  ADD_TEST(ETS-C1P1-${filenameInput}-compare2ref
-      ${EXECUTABLE_OUTPUT_PATH}/comparePGXimages
+  ADD_TEST(NAME ETS-C1P1-${filenameInput}-compare2ref
+      COMMAND comparePGXimages
      -b ${BASELINE_CONF}/${filenameRef}
      -t ${TEMP}/c1${filenameInput}.pgx
      -n ${nbComponents}
@@ -415,8 +419,8 @@ FOREACH(numFileC1P1 RANGE 1 7)
                        PROPERTIES DEPENDS 
                        ETS-C1P1-${filenameInput}-decode)
                        
-  ADD_TEST(NR-C1P1-${filenameInput}-compare2base
-      ${EXECUTABLE_OUTPUT_PATH}/comparePGXimages
+  ADD_TEST(NAME NR-C1P1-${filenameInput}-compare2base
+      COMMAND comparePGXimages
      -b ${BASELINE_NR}/opj_${filenameRef}
      -t ${TEMP}/c1${filenameInput}.pgx
      -n ${nbComponents}
@@ -447,16 +451,16 @@ FOREACH(numFileJP2 RANGE 1 9)
   # Get corresponding tests parameters
   list(GET JP2_PEAK_list ${numFileJP2}  PEAK_limit)
   
-  ADD_TEST(ETS-JP2-${filenameInput}-decode
-      ${EXECUTABLE_OUTPUT_PATH}/j2k_to_image 
+  ADD_TEST(NAME ETS-JP2-${filenameInput}-decode
+      COMMAND j2k_to_image 
       -i ${INPUT_CONF}/${filenameInput}
       -o ${TEMP}/${filenameInput}.tif
       )
 #
 # FIXME: Need to implement a compare tif images function
 #  
-#  ADD_TEST(ETS-JP2-${filenameInput}-compare2ref
-#      ${EXECUTABLE_OUTPUT_PATH}/compareTIFimages
+#  ADD_TEST(NAME ETS-JP2-${filenameInput}-compare2ref
+#      COMMAND compareTIFimages
 #     -b ${BASELINE_CONF}/${filenameRef_tif}
 #     -t ${TEMP}/${filenameInput}.pgx
 #     -p 4
@@ -466,8 +470,8 @@ FOREACH(numFileJP2 RANGE 1 9)
 #                       PROPERTIES DEPENDS 
 #                       ETS-JP2-${filenameInput}-decode)
 #                       
-#  ADD_TEST(NR-JP2-${filenameInput}-compare2base
-#      ${EXECUTABLE_OUTPUT_PATH}/compareTIFimages
+#  ADD_TEST(NAME NR-JP2-${filenameInput}-compare2base
+#      COMMAND compareTIFimages
 #     -b ${BASELINE_NR}/opj_${filenameRef}
 #     -t ${TEMP}/${filenameInput}.tif
 #     -d 
@@ -499,14 +503,14 @@ FOREACH(numFileP0 RANGE 1 16)
   get_filename_component(filenameRefSub ${filenameInput} NAME_WE)
 
 
-  ADD_TEST(NR-${filenameInput}-dump
-      ${EXECUTABLE_OUTPUT_PATH}/j2k_dump
+  ADD_TEST(NAME NR-${filenameInput}-dump
+      COMMAND j2k_dump
      -i ${INPUT_CONF}/${filenameInput}
      -o ${TEMP}/${filenameInput}.txt
      )
      
-  ADD_TEST(NR-${filenameInput}-compare_dump2base
-      ${EXECUTABLE_OUTPUT_PATH}/compare_dump_files
+  ADD_TEST(NAME NR-${filenameInput}-compare_dump2base
+      COMMAND compare_dump_files
      -b ${BASELINE_NR}/opj_${filenameRefSub}.txt
      -t ${TEMP}/${filenameInput}.txt
      )
@@ -528,14 +532,14 @@ FOREACH(numFileP1 RANGE 1 7)
   SET( filenameInput p1_0${numFileP1}.j2k )
   get_filename_component(filenameInputSub ${filenameInput} NAME_WE)
 
-  ADD_TEST(NR-${filenameInput}-dump
-      ${EXECUTABLE_OUTPUT_PATH}/j2k_dump
+  ADD_TEST(NAME NR-${filenameInput}-dump
+      COMMAND j2k_dump
      -i ${INPUT_CONF}/${filenameInput}
      -o ${TEMP}/${filenameInput}.txt
      )
      
-  ADD_TEST(NR-${filenameInput}-compare_dump2base
-      ${EXECUTABLE_OUTPUT_PATH}/compare_dump_files
+  ADD_TEST(NAME NR-${filenameInput}-compare_dump2base
+      COMMAND compare_dump_files
      -b ${BASELINE_NR}/opj_${filenameInputSub}.txt
      -t ${TEMP}/${filenameInput}.txt
      )
@@ -557,14 +561,14 @@ FOREACH(numFileJP2 RANGE 1 9)
   SET( filenameInput "file${numFileJP2}.jp2" )
   get_filename_component(filenameInputSub ${filenameInput} NAME_WE)
 
-  ADD_TEST(NR-${filenameInput}-dump
-      ${EXECUTABLE_OUTPUT_PATH}/j2k_dump
+  ADD_TEST(NAME NR-${filenameInput}-dump
+      COMMAND j2k_dump
      -i ${INPUT_CONF}/${filenameInput}
      -o ${TEMP}/${filenameInput}.txt
      )
      
-  ADD_TEST(NR-${filenameInput}-compare_dump2base
-      ${EXECUTABLE_OUTPUT_PATH}/compare_dump_files
+  ADD_TEST(NAME NR-${filenameInput}-compare_dump2base
+      COMMAND compare_dump_files
      -b ${BASELINE_NR}/opj_${filenameInputSub}.txt
      -t ${TEMP}/${filenameInput}.txt
      )
@@ -573,4 +577,4 @@ FOREACH(numFileJP2 RANGE 1 9)
                        PROPERTIES DEPENDS 
                        NR-${filenameInput}-dump) 
                        
-ENDFOREACH(numFileJP2) 
+ENDFOREACH(numFileJP2) 

tests/nonregression/CMakeLists.txt

@@ -166,8 +166,8 @@ FOREACH(OPJ_TEST_CMD_LINE ${OPJ_TEST_CMD_LINE_LIST})
         math(EXPR IT_TEST_ENC "${IT_TEST_ENC}+1" )
         
         # Encode an image into the jpeg2000 format
-        ADD_TEST(NR-ENC-${INPUT_FILENAME_NAME}-${IT_TEST_ENC}-encode
-          ${EXECUTABLE_OUTPUT_PATH}/image_to_j2k
+        ADD_TEST(NAME NR-ENC-${INPUT_FILENAME_NAME}-${IT_TEST_ENC}-encode
+          COMMAND image_to_j2k
           ${CMD_ARG_LIST_2}
         )
         
@@ -176,8 +176,8 @@ FOREACH(OPJ_TEST_CMD_LINE ${OPJ_TEST_CMD_LINE_LIST})
         ELSE(FAILED_TEST_FOUND)
           
           # Dump the encoding file 
-          ADD_TEST(NR-ENC-${INPUT_FILENAME_NAME}-${IT_TEST_ENC}-dump
-            ${EXECUTABLE_OUTPUT_PATH}/j2k_dump
+          ADD_TEST(NAME NR-ENC-${INPUT_FILENAME_NAME}-${IT_TEST_ENC}-dump
+            COMMAND j2k_dump
             -i ${OUTPUT_FILENAME}
             -o ${OUTPUT_FILENAME}-ENC-${IT_TEST_ENC}.txt
           )
@@ -186,8 +186,8 @@ FOREACH(OPJ_TEST_CMD_LINE ${OPJ_TEST_CMD_LINE_LIST})
                                NR-ENC-${INPUT_FILENAME_NAME}-${IT_TEST_ENC}-encode) 
         
           # Compare the dump file with the baseline 
-          ADD_TEST(NR-ENC-${INPUT_FILENAME_NAME}-${IT_TEST_ENC}-compare_dump2base
-            ${EXECUTABLE_OUTPUT_PATH}/compare_dump_files
+          ADD_TEST(NAME NR-ENC-${INPUT_FILENAME_NAME}-${IT_TEST_ENC}-compare_dump2base
+            COMMAND compare_dump_files
             -b ${BASELINE_NR}/opj_${OUTPUT_FILENAME_NAME_WE}-ENC-${IT_TEST_ENC}.txt
             -t ${OUTPUT_FILENAME}-ENC-${IT_TEST_ENC}.txt
           )
@@ -198,8 +198,8 @@ FOREACH(OPJ_TEST_CMD_LINE ${OPJ_TEST_CMD_LINE_LIST})
     
           # Decode the encoding file with kakadu expand command
           IF (KDU_EXPAND_EXECUTABLE)
-            ADD_TEST(NR-ENC-${INPUT_FILENAME_NAME}-${IT_TEST_ENC}-decode-ref
-              ${KDU_EXPAND_EXECUTABLE}
+            ADD_TEST(NAME NR-ENC-${INPUT_FILENAME_NAME}-${IT_TEST_ENC}-decode-ref
+              COMMAND ${KDU_EXPAND_EXECUTABLE}
               -i ${OUTPUT_FILENAME}
               -o ${OUTPUT_FILENAME}.raw
               )
@@ -209,8 +209,8 @@ FOREACH(OPJ_TEST_CMD_LINE ${OPJ_TEST_CMD_LINE_LIST})
                                  NR-ENC-${INPUT_FILENAME_NAME}-${IT_TEST_ENC}-encode) 
         
             # Compare the decoding file with baseline generated from the kdu_expand and baseline.j2k 
-            ADD_TEST(NR-ENC-${INPUT_FILENAME_NAME}-${IT_TEST_ENC}-compare_dec-ref-out2base
-              ${EXECUTABLE_OUTPUT_PATH}/compareRAWimages
+            ADD_TEST(NAME NR-ENC-${INPUT_FILENAME_NAME}-${IT_TEST_ENC}-compare_dec-ref-out2base
+              COMMAND compareRAWimages
               -b ${BASELINE_NR}/opj_${OUTPUT_FILENAME_NAME_WE}-ENC-${IT_TEST_ENC}.raw
               -t ${OUTPUT_FILENAME}.raw
             )
@@ -227,8 +227,8 @@ FOREACH(OPJ_TEST_CMD_LINE ${OPJ_TEST_CMD_LINE_LIST})
       math(EXPR IT_TEST_DEC "${IT_TEST_DEC}+1" )
       
       # Decode the input image
-      ADD_TEST(NR-DEC-${INPUT_FILENAME_NAME}-${IT_TEST_DEC}-decode
-        ${EXECUTABLE_OUTPUT_PATH}/j2k_to_image 
+      ADD_TEST(NAME NR-DEC-${INPUT_FILENAME_NAME}-${IT_TEST_DEC}-decode
+        COMMAND j2k_to_image 
         ${CMD_ARG_LIST_2}
       )
       
@@ -237,11 +237,16 @@ FOREACH(OPJ_TEST_CMD_LINE ${OPJ_TEST_CMD_LINE_LIST})
         SET_TESTS_PROPERTIES(NR-DEC-${INPUT_FILENAME_NAME}-${IT_TEST_DEC}-decode PROPERTIES WILL_FAIL TRUE)
      
       ELSE(FAILED_TEST_FOUND)
-  
+        # if not failed, check against registered md5:
+        add_test(NAME NR-DEC-${INPUT_FILENAME_NAME}-${IT_TEST_DEC}-decode-md5 COMMAND ${CMAKE_COMMAND}
+          -DREFFILE:STRING=${CMAKE_CURRENT_SOURCE_DIR}/md5refs.txt
+          -DFILENAME:STRING=${INPUT_FILENAME_NAME}
+          -P ${CMAKE_CURRENT_SOURCE_DIR}/checkmd5refs.cmake)
+
 # FIXME: add a compare2base function base on raw which 
 # can output png diff files if necesary 
-#  ADD_TEST(NR-${filename}-compare2base
-#      ${EXECUTABLE_OUTPUT_PATH}/comparePGXimages
+#  ADD_TEST(NAME NR-${filename}-compare2base
+#      COMMAND comparePGXimages
 #     -b ${BASELINE_NR}/opj_${filenameRef}
 #     -t ${TEMP}/${filename}.pgx
 #     -n ${nbComponents}
@@ -254,15 +259,15 @@ FOREACH(OPJ_TEST_CMD_LINE ${OPJ_TEST_CMD_LINE_LIST})
 #                       NR-${filename}-decode)  
     
         # Dump the input image
-        ADD_TEST(NR-DEC-${INPUT_FILENAME_NAME}-${IT_TEST_DEC}-dump
-          ${EXECUTABLE_OUTPUT_PATH}/j2k_dump
+        ADD_TEST(NAME NR-DEC-${INPUT_FILENAME_NAME}-${IT_TEST_DEC}-dump
+          COMMAND j2k_dump
           -i ${INPUT_FILENAME}
           -o ${TEMP}/${INPUT_FILENAME_NAME}.txt
         )
      
         # Compare the dump output with the baseline
-        ADD_TEST(NR-DEC-${INPUT_FILENAME_NAME}-${IT_TEST_DEC}-compare_dump2base
-          ${EXECUTABLE_OUTPUT_PATH}/compare_dump_files
+        ADD_TEST(NAME NR-DEC-${INPUT_FILENAME_NAME}-${IT_TEST_DEC}-compare_dump2base
+          COMMAND compare_dump_files
          -b ${BASELINE_NR}/opj_${INPUT_FILENAME_NAME_WE}.txt
          -t ${TEMP}/${INPUT_FILENAME_NAME}.txt
         )

tests/nonregression/checkmd5refs.cmake

@@ -0,0 +1,56 @@
+#  Copyright (c) 2014 Mathieu Malaterre <mathieu.malaterre@voxxl.com>
+#
+#  Redistribution and use is allowed according to the terms of the New
+#  BSD license.
+#  For details see the accompanying COPYING-CMAKE-SCRIPTS file.
+
+# check md5 refs
+#
+# This script will be used to make sure we never introduce a regression on any
+# of the nonregression file.
+#
+# The approach is relatively simple, we compute a md5sum for each of the decode
+# file. Anytime the md5sum is different from the reference one, we assume
+# something went wrong and simply fails.  of course if could happen during the
+# course of openjpeg development that the internals are changed that impact the
+# decoding process that the output would be bitwise different (while PSNR would
+# be kept identical).
+
+#message("0: ${REFFILE}")
+#message("1: ${CMAKE_CURRENT_BINARY_DIR}")
+#message("2: ${FILENAME}")
+file(GLOB globfiles "Temporary/${FILENAME}*.pgx" )
+#message("6: ${globfiles}")
+
+# REFFILE follow what md5sum -c would expect as input:
+file(READ ${REFFILE} variable)
+#string(REGEX REPLACE "\r?\n" ";" variable "${variable}")
+
+foreach(pgxfullpath ${globfiles})
+  get_filename_component(pgxfile ${pgxfullpath} NAME)
+  #message("8: ${pgxfile}")
+  execute_process(
+    COMMAND ${CMAKE_COMMAND} -E md5sum ${pgxfile}
+    WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/Temporary
+    RESULT_VARIABLE res
+    OUTPUT_VARIABLE output
+    ERROR_VARIABLE  error_output
+    OUTPUT_STRIP_TRAILING_WHITESPACE # important
+  )
+  
+  # Pass the output back to ctest
+  if(res)
+    message(SEND_ERROR "md5 could not be computed, it failed with value ${res}. Output was: ${error_output}")
+  endif()
+  #message("3: ${output}")
+  
+  #message("4: ${variable}")
+  string(REGEX MATCH "[0-9a-f]+  ${pgxfile}" output_var "${variable}")
+  #message("5: ${output_var}")
+  
+  if("${output_var}" STREQUAL "${output}")
+    #message("6: eqal")
+  else()
+    message(SEND_ERROR "not equal: [${output_var}] vs [${output}]")
+  endif()
+endforeach()

tests/nonregression/md5refs.txt

@@ -0,0 +1,84 @@
+6f22c9a9bd474202ac6cd3a066e15200  _00042.j2k_0.pgx
+a3a0606dfa0779d657c6a923b90e4678  _00042.j2k_1.pgx
+106954dc468dfe0884d02268e91f9f5b  _00042.j2k_2.pgx
+8889def55f1e18dae6002b9b3a6dd152  123.j2c_0.pgx
+4a0daf7a9065101379eaebc28e436b1e  Bretagne2.j2k_0.pgx
+07578fc7bf81d3da694de8ae27308b82  Bretagne2.j2k_1.pgx
+3690c42f83bad42f4abea48525d45e0e  Bretagne2.j2k_2.pgx
+8889def55f1e18dae6002b9b3a6dd152  bug.j2c_0.pgx
+22c8d33a956ba83079d1102457bc77a1  buxI.j2k_0.pgx
+b8f473c07ba5ebfc195bdd53c3b3b97f  buxR.j2k_0.pgx
+05c062aca83d13b8095460f38a690a08  Cannotreaddatawithnosizeknown.j2k_0.pgx
+6276da0ec5fac44d683d3468b290331d  cthead1.j2k_0.pgx
+8afcac9a696cc8d753b0eb9f4ae692ff  CT_Phillips_JPEG2K_Decompr_Problem.j2k_0.pgx
+04d35ab6160c9029549f72358df984da  file409752_0.pgx
+2813bd6fdc2c306b91b3da3688b8bf49  file409752_1.pgx
+e273e2aaea4a4fc1b2cf7c09c53c3cc6  file409752_2.pgx
+05c062aca83d13b8095460f38a690a08  illegalcolortransform.j2k_0.pgx
+cb28787aa7c223f03e6acad71e244108  issue104_jpxstream.jp2_0.pgx
+cb28787aa7c223f03e6acad71e244108  issue104_jpxstream.jp2_1.pgx
+cb28787aa7c223f03e6acad71e244108  issue104_jpxstream.jp2_2.pgx
+adda4f5e46845b96dd3df14a76aa7229  issue188_beach_64bitsbox.jp2_0.pgx
+90a9709c166019d1e101e7b96d257ed9  issue188_beach_64bitsbox.jp2_1.pgx
+37e23d2df06ee60bf0f9f5e1c16054d8  issue188_beach_64bitsbox.jp2_2.pgx
+cb89739232898a823355861d834b5734  issue205.jp2_0.pgx
+a09d34928fd86e6f2d7e6edc1764d2b7  issue205.jp2_1.pgx
+6f712d0685f2c5522f01b238365f4284  issue205.jp2_2.pgx
+de992d54d59032eb07d21983dbe8155b  issue205.jp2_3.pgx
+8fae7a39e459409f64e4529d2214087a  issue206_image-000.jp2_0.pgx
+555a504a93c9a14f61c894da3b393e87  issue206_image-000.jp2_1.pgx
+5f06b7c45446ae20c22cada46478a9dc  issue206_image-000.jp2_2.pgx
+e1807db57b5f5192c4b77b83e8b5c477  issue228.j2k_0.pgx
+4093cc34d838780b35a8be410247fa7f  j2k32.j2k_0.pgx
+ce4e556aaa0844b92a92c35c200fc43e  j2k32.j2k_1.pgx
+ea926520f990640862f3fe6616097613  j2k32.j2k_2.pgx
+66b60e866991e03f9a2de18e80d3102b  kakadu_v4-4_openjpegv2_broken.j2k_0.pgx
+12a8a4668315d9ae27969991251ce85f  kodak_2layers_lrcp.j2c_0.pgx
+56d0b0c547d6d5bb12f0c36e88722b11  kodak_2layers_lrcp.j2c_1.pgx
+48ba092fb40090c160bbd08bdf7bdbf2  kodak_2layers_lrcp.j2c_2.pgx
+05c062aca83d13b8095460f38a690a08  MarkerIsNotCompliant.j2k_0.pgx
+ff73d2bd32951d9e55b02186aac24aff  Marrin.jp2_0.pgx
+55ce884dd2346af6a5172a434ee578fa  Marrin.jp2_1.pgx
+29131264861b4ee21011149b27e4d488  mem-b2ace68c-1381.jp2_0.pgx
+29131264861b4ee21011149b27e4d488  mem-b2ace68c-1381.jp2_1.pgx
+29131264861b4ee21011149b27e4d488  mem-b2ace68c-1381.jp2_2.pgx
+df568fe0529219cc2c8f215e236f4b3d  mem-b2ace68c-1381.jp2_3.pgx
+41ec1a0228c703b10f95388c1160753b  mem-b2b86b74-2753.jp2_0.pgx
+41ec1a0228c703b10f95388c1160753b  mem-b2b86b74-2753.jp2_1.pgx
+41ec1a0228c703b10f95388c1160753b  mem-b2b86b74-2753.jp2_2.pgx
+97557ab9e38a7aff621e583fbb66b099  merged.jp2_0.pgx
+386fbdcd294429733e3272d62ed5a15a  merged.jp2_1.pgx
+d3907bbd67be1dae31b4377fa4dc0373  merged.jp2_2.pgx
+de8bba9ac366eeb2f170f0cf3605cf12  movie_00000.j2k_0.pgx
+334bac3285f7138e9dd29d59bdcb22ff  movie_00000.j2k_1.pgx
+5511d2c96d1d1f2062491e00d5234506  movie_00000.j2k_2.pgx
+de8bba9ac366eeb2f170f0cf3605cf12  movie_00001.j2k_0.pgx
+334bac3285f7138e9dd29d59bdcb22ff  movie_00001.j2k_1.pgx
+5511d2c96d1d1f2062491e00d5234506  movie_00001.j2k_2.pgx
+de8bba9ac366eeb2f170f0cf3605cf12  movie_00002.j2k_0.pgx
+334bac3285f7138e9dd29d59bdcb22ff  movie_00002.j2k_1.pgx
+5511d2c96d1d1f2062491e00d5234506  movie_00002.j2k_2.pgx
+951a55623a92e97a064a350f11c2637d  orb-blue10-lin-j2k.j2k_0.pgx
+5033aaf699dfa3dfe041af33c9ad688d  orb-blue10-lin-j2k.j2k_1.pgx
+dbe33d72484caedf9c2cc18fd670884c  orb-blue10-lin-j2k.j2k_2.pgx
+0fec67d9546171699958c6682e725b79  orb-blue10-lin-j2k.j2k_3.pgx
+84462261381b6732ec4f2addb0070d24  orb-blue10-lin-jp2.jp2_0.pgx
+6129edf57e5db2344fcde5ce99ae8732  orb-blue10-lin-jp2.jp2_1.pgx
+fdad26b1e078aa32bd4b77a5f44da43c  orb-blue10-lin-jp2.jp2_2.pgx
+0fec67d9546171699958c6682e725b79  orb-blue10-lin-jp2.jp2_3.pgx
+671feee525e2485060536edbf21380f1  orb-blue10-win-j2k.j2k_0.pgx
+912cdee24dd360b7999f7ee4a51083b4  orb-blue10-win-j2k.j2k_1.pgx
+64833b4b7557936b9233087e92f8ae28  orb-blue10-win-j2k.j2k_2.pgx
+789a299a1523b2d9d3f561d12a2da817  orb-blue10-win-j2k.j2k_3.pgx
+671feee525e2485060536edbf21380f1  orb-blue10-win-jp2.jp2_0.pgx
+7442756e83571c0e87493e03f12b2d34  orb-blue10-win-jp2.jp2_1.pgx
+5f99ff2aeb17e167fe7049bcf339d0b3  orb-blue10-win-jp2.jp2_2.pgx
+fe028d56d6c7aaee87239a115093412a  orb-blue10-win-jp2.jp2_3.pgx
+371aa0a7ff40a73b45f1fa41e210d1db  pacs.ge.j2k_0.pgx
+6ae110e1fb5a869af3dbc5fbc735b0bd  relax.jp2_0.pgx
+518a8f28dacc034982507f43763b88dd  relax.jp2_1.pgx
+c678b04f4d3e59b9d66a8bce37c553c0  relax.jp2_2.pgx
+cdb1d69eb48ffd8545751326b86d9d7e  test_lossless.j2k_0.pgx
+a37e7e5811d7c0c7adb61582790ccd33  text_GBR.jp2_0.pgx
+fc2173be54954a146b4e2887ee14be06  text_GBR.jp2_1.pgx
+14108b4fb8d9126750db0424417ed17d  text_GBR.jp2_2.pgx

tests/nonregression/test_suite.ctest.in

@@ -37,10 +37,11 @@ image_to_j2k -i @INPUT_NR_PATH@/X_6_2K_24_FULL_CBR_CIRCLE_000.tif -o @TEMP_PATH@
 j2k_to_image -i  @INPUT_NR_PATH@/Bretagne2.j2k -o @TEMP_PATH@/Bretagne2.j2k.pgx
 j2k_to_image -i  @INPUT_NR_PATH@/_00042.j2k -o @TEMP_PATH@/_00042.j2k.pgx
 j2k_to_image -i  @INPUT_NR_PATH@/123.j2c -o @TEMP_PATH@/123.j2c.pgx
-j2k_to_image -i  @INPUT_NR_PATH@/broken.jp2 -o @TEMP_PATH@/broken.jp2.pgx
-j2k_to_image -i  @INPUT_NR_PATH@/broken2.jp2 -o @TEMP_PATH@/broken2.jp2.pgx
-j2k_to_image -i  @INPUT_NR_PATH@/broken3.jp2 -o @TEMP_PATH@/broken3.jp2.pgx
-j2k_to_image -i  @INPUT_NR_PATH@/broken4.jp2 -o @TEMP_PATH@/broken4.jp2.pgx
+# The 4 following tests should failed (kakadu indicates that they are corrupted)
+!j2k_to_image -i  @INPUT_NR_PATH@/broken.jp2 -o @TEMP_PATH@/broken.jp2.pgx
+!j2k_to_image -i  @INPUT_NR_PATH@/broken2.jp2 -o @TEMP_PATH@/broken2.jp2.pgx
+!j2k_to_image -i  @INPUT_NR_PATH@/broken3.jp2 -o @TEMP_PATH@/broken3.jp2.pgx
+!j2k_to_image -i  @INPUT_NR_PATH@/broken4.jp2 -o @TEMP_PATH@/broken4.jp2.pgx
 j2k_to_image -i  @INPUT_NR_PATH@/bug.j2c -o @TEMP_PATH@/bug.j2c.pgx
 j2k_to_image -i  @INPUT_NR_PATH@/buxI.j2k -o @TEMP_PATH@/buxI.j2k.pgx
 j2k_to_image -i  @INPUT_NR_PATH@/buxR.j2k -o @TEMP_PATH@/buxR.j2k.pgx
@@ -62,6 +63,93 @@ j2k_to_image -i  @INPUT_NR_PATH@/orb-blue10-win-j2k.j2k -o @TEMP_PATH@/orb-blue1
 j2k_to_image -i  @INPUT_NR_PATH@/orb-blue10-win-jp2.jp2 -o @TEMP_PATH@/orb-blue10-win-jp2.jp2.pgx
 j2k_to_image -i  @INPUT_NR_PATH@/relax.jp2 -o @TEMP_PATH@/relax.jp2.pgx
 j2k_to_image -i  @INPUT_NR_PATH@/test_lossless.j2k -o @TEMP_PATH@/test_lossless.j2k.pgx
+# text_GBR.jp2 file exhibt a error about a tile part with a index > of the number of tile-part in this tile (related to issue 202, 206, 208)
 j2k_to_image -i  @INPUT_NR_PATH@/text_GBR.jp2 -o @TEMP_PATH@/text_GBR.jp2.pgx
+# pacs.ge file should throw an error but finally it seems work with v2
+j2k_to_image -i  @INPUT_NR_PATH@/pacs.ge.j2k -o @TEMP_PATH@/pacs.ge.j2k.pgx
+# related to issue 135 
+j2k_to_image -i  @INPUT_NR_PATH@/kodak_2layers_lrcp.j2c -o @TEMP_PATH@/kodak_2layers_lrcp.j2c.pgx
+j2k_to_image -i  @INPUT_NR_PATH@/kodak_2layers_lrcp.j2c -o @TEMP_PATH@/kodak_2layers_lrcp.j2c.pgx -l 2
+# related to issue 104 and 110
 j2k_to_image -i  @INPUT_NR_PATH@/issue104_jpxstream.jp2 -o @TEMP_PATH@/issue104_jpxstream.jp2.pgx
+# File not supported by kakadu (Malformed PCLR box) and not supoprter by openjpeg (problem with value of TPSot)
+!j2k_to_image -i  @INPUT_NR_PATH@/mem-b2ace68c-1381.jp2 -o @TEMP_PATH@/mem-b2ace68c-1381.jp2.pgx
+# File which produced weird output with kakadu and not supoprter by openjpeg (problem with value of TPSot, issue 202, 206, 208)
+j2k_to_image -i  @INPUT_NR_PATH@/mem-b2b86b74-2753.jp2 -o @TEMP_PATH@/mem-b2b86b74-2753.jp2.pgx
+# issue 191 raised by the gdal fuzzer test (should properly failed)
+!j2k_to_image -i  @INPUT_NR_PATH@/gdal_fuzzer_unchecked_numresolutions.jp2 -o @TEMP_PATH@/gdal_fuzzer_unchecked_numresolutions.pgx
+# issue 192 raised by the gdal fuzzer test (should nicely failed)
+!j2k_to_image -i  @INPUT_NR_PATH@/gdal_fuzzer_assert_in_opj_j2k_read_SQcd_SQcc.patch.jp2 -o @TEMP_PATH@/gdal_fuzzer_assert_in_opj_j2k_read_SQcd_SQcc.patch.pgx
+# issue 193 raised by the gdal fuzzer test (should nicely failed)
+!j2k_to_image -i  @INPUT_NR_PATH@/gdal_fuzzer_check_number_of_tiles.jp2 -o @TEMP_PATH@/gdal_fuzzer_check_number_of_tiles.pgx
+# issue 194 raised by the gdal fuzzer test (should nicely failed)
+!j2k_to_image -i  @INPUT_NR_PATH@/gdal_fuzzer_check_comp_dx_dy.jp2 -o @TEMP_PATH@/gdal_fuzzer_check_comp_dx_dy.pgx
+# issue 202 
 j2k_to_image -i  @INPUT_NR_PATH@/file409752.jp2 -o @TEMP_PATH@/file409752.jp2.pgx
+# issue 188 
+j2k_to_image -i  @INPUT_NR_PATH@/issue188_beach_64bitsbox.jp2 -o @TEMP_PATH@/issue188_beach_64bitsbox.jp2.pgx
+# issue 206
+j2k_to_image -i  @INPUT_NR_PATH@/issue206_image-000.jp2 -o @TEMP_PATH@/issue206_image-000.jp2.pgx
+# issue 205
+j2k_to_image -i  @INPUT_NR_PATH@/issue205.jp2 -o @TEMP_PATH@/issue205.jp2.pgx
+# issue 225 (sumatrapdf)
+!j2k_to_image -i @INPUT_NR_PATH@/451.pdf.SIGSEGV.5b5.3723.jp2  -o @TEMP_PATH@/451.pdf.SIGSEGV.5b5.3723.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/1888.pdf.asan.35.988.jp2      -o @TEMP_PATH@/1888.pdf.asan.35.988.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/2539.pdf.SIGFPE.706.1712.jp2  -o @TEMP_PATH@/2539.pdf.SIGFPE.706.1712.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/2236.pdf.SIGSEGV.398.1376.jp2 -o @TEMP_PATH@/2236.pdf.SIGSEGV.398.1376.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/1336.pdf.asan.47.376.jp2      -o @TEMP_PATH@/1336.pdf.asan.47.376.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/1851.pdf.SIGSEGV.ce9.948.jp2  -o @TEMP_PATH@/1851.pdf.SIGSEGV.ce9.948.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/4149.pdf.SIGSEGV.cf7.3501.jp2 -o @TEMP_PATH@/4149.pdf.SIGSEGV.cf7.3501.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/4035.pdf.SIGSEGV.d8b.3375.jp2 -o @TEMP_PATH@/4035.pdf.SIGSEGV.d8b.3375.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/2977.pdf.asan.67.2198.jp2     -o @TEMP_PATH@/2977.pdf.asan.67.2198.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/451.pdf.SIGSEGV.ce9.3723.jp2  -o @TEMP_PATH@/451.pdf.SIGSEGV.ce9.3723.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/3635.pdf.asan.77.2930.jp2     -o @TEMP_PATH@/3635.pdf.asan.77.2930.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/1802.pdf.SIGSEGV.36e.894.jp2  -o @TEMP_PATH@/1802.pdf.SIGSEGV.36e.894.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/451.pdf.SIGSEGV.f4c.3723.jp2  -o @TEMP_PATH@/451.pdf.SIGSEGV.f4c.3723.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/2.pdf.SIGFPE.706.1112.jp2     -o @TEMP_PATH@/2.pdf.SIGFPE.706.1112.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/147af3f1083de4393666b7d99b01b58b_signal_sigsegv_130c531_6155_5136.jp2 -o @TEMP_PATH@/147af3f1083de4393666b7d99b01b58b_signal_sigsegv_130c531_6155_5136.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/4241ac039aba57e6a9c948d519d94216_asan_heap-oob_14650f2_7469_602.jp2 -o @TEMP_PATH@/4241ac039aba57e6a9c948d519d94216_asan_heap-oob_14650f2_7469_602.jp2
+# issue 228 (16bits/lossy)
+j2k_to_image -i @INPUT_NR_PATH@/issue228.j2k                  -o @TEMP_PATH@/issue228.j2k.pgx
+# issue 229
+!j2k_to_image -i @INPUT_NR_PATH@/27ac957758a35d00d6765a0c86350d9c.SIGFPE.d25.537.jpc -o @TEMP_PATH@27ac957758a35d00d6765a0c86350d9c.SIGFPE.d25.537.jpc.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/26ccf3651020967f7778238ef5af08af.SIGFPE.d25.527.jp2 -o @TEMP_PATH@26ccf3651020967f7778238ef5af08af.SIGFPE.d25.527.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/0290cb77c5df21828fa74cf2ab2c84d8.SIGFPE.d25.31.jp2  -o @TEMP_PATH@0290cb77c5df21828fa74cf2ab2c84d8.SIGFPE.d25.31.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/3672da2f1f67bbecad27d7181b4e9d7c.SIGFPE.d25.805.jpc -o @TEMP_PATH@3672da2f1f67bbecad27d7181b4e9d7c.SIGFPE.d25.805.jpc.pgx
+# issue 254 (loss in quality)
+j2k_to_image -i @INPUT_NR_PATH@/issue254.jp2                  -o @TEMP_PATH@/issue254.jp2.pgx
+# issue 142
+j2k_to_image -i @INPUT_NR_PATH@/issue142.j2k                  -o @TEMP_PATH@/issue142.j2k.pgx
+# issue 134
+j2k_to_image -i @INPUT_NR_PATH@/issue134.jp2                  -o @TEMP_PATH@/issue134.jp2.pgx
+# issue 135
+j2k_to_image -i @INPUT_NR_PATH@/issue135.j2k                  -o @TEMP_PATH@/issue135.j2k.pgx
+# issue 208
+j2k_to_image -i @INPUT_NR_PATH@/issue208.jp2                  -o @TEMP_PATH@/issue208.jp2.pgx
+# issue 211
+j2k_to_image -i @INPUT_NR_PATH@/issue211.jp2                  -o @TEMP_PATH@/issue211.jp2.pgx
+# issue 171
+j2k_to_image -i @INPUT_NR_PATH@/issue171.jp2                  -o @TEMP_PATH@/issue171.jp2.pgx
+# issue 171
+!j2k_to_image -i @INPUT_NR_PATH@/issue165.jp2                  -o @TEMP_PATH@/issue165.jp2.pgx
+#
+!j2k_to_image -i @INPUT_NR_PATH@/broken.jpc                    -o @TEMP_PATH@/broken.jpc.pgx
+# issue 226
+j2k_to_image -i @INPUT_NR_PATH@/issue226.j2k                   -o @TEMP_PATH@/issue226.j2k.pgx
+# issue 297
+!j2k_to_image -i @INPUT_NR_PATH@/edf_c2_1103421.jp2  -o @TEMP_PATH@/edf_c2_1103421.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/edf_c2_1178956.jp2  -o @TEMP_PATH@/edf_c2_1178956.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/edf_c2_1000290.jp2  -o @TEMP_PATH@/edf_c2_1000290.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/edf_c2_1000691.jp2  -o @TEMP_PATH@/edf_c2_1000691.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/edf_c2_20.jp2       -o @TEMP_PATH@/edf_c2_20.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/edf_c2_1377017.jp2  -o @TEMP_PATH@/edf_c2_1377017.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/edf_c2_1002767.jp2  -o @TEMP_PATH@/edf_c2_1002767.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/edf_c2_10025.jp2    -o @TEMP_PATH@/edf_c2_10025.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/edf_c2_1000234.jp2  -o @TEMP_PATH@/edf_c2_1000234.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/edf_c2_225881.jp2   -o @TEMP_PATH@/edf_c2_225881.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/edf_c2_1000671.jp2  -o @TEMP_PATH@/edf_c2_1000671.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/edf_c2_1013627.jp2  -o @TEMP_PATH@/edf_c2_1013627.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/edf_c2_1015644.jp2  -o @TEMP_PATH@/edf_c2_1015644.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/edf_c2_101463.jp2   -o @TEMP_PATH@/edf_c2_101463.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/edf_c2_1674177.jp2  -o @TEMP_PATH@/edf_c2_1674177.jp2.pgx
+!j2k_to_image -i @INPUT_NR_PATH@/edf_c2_1673169.jp2  -o @TEMP_PATH@/edf_c2_1673169.jp2.pgx

tests/unit/CMakeLists.txt

@@ -5,5 +5,5 @@ add_executable(testempty2 testempty2.c)
 target_link_libraries(testempty1 openjpeg)
 target_link_libraries(testempty2 openjpeg)
 
-add_test(testempty1 ${EXECUTABLE_OUTPUT_PATH}/testempty1)
-add_test(testempty2 ${EXECUTABLE_OUTPUT_PATH}/testempty2)
+add_test(NAME testempty1 COMMAND testempty1)
+add_test(NAME testempty2 COMMAND testempty2)

tests/unit/testempty2.c

@@ -63,8 +63,8 @@ int main(int argc, char *argv[])
 
   opj_cparameters_t parameters;
 
-  int subsampling_dx = parameters.subsampling_dx;
-  int subsampling_dy = parameters.subsampling_dy;
+  int subsampling_dx;
+  int subsampling_dy;
   const char outputfile[] = "testempty2.j2k";
 
   opj_image_cmptparm_t cmptparm;
@@ -81,6 +81,8 @@ int main(int argc, char *argv[])
   opj_set_default_encoder_parameters(&parameters);
   parameters.cod_format = J2K_CFMT;
   puts(v);
+  subsampling_dx = parameters.subsampling_dx;
+  subsampling_dy = parameters.subsampling_dy;
   cmptparm.prec = 8;
   cmptparm.bpp = 8;
   cmptparm.sgnd = 0;