/*M/////////////////////////////////////////////////////////////////////////////////////// // // IMPORTANT: READ BEFORE DOWNLOADING, COPYING, INSTALLING OR USING. // // By downloading, copying, installing or using the software you agree to this license. // If you do not agree to this license, do not download, install, // copy or use the software. // // // License Agreement // For Open Source Computer Vision Library // // Copyright (C) 2000-2008, Intel Corporation, all rights reserved. // Copyright (C) 2009, Willow Garage Inc., all rights reserved. // Third party copyrights are property of their respective owners. // // Redistribution and use in source and binary forms, with or without modification, // are permitted provided that the following conditions are met: // // * Redistribution's of source code must retain the above copyright notice, // this list of conditions and the following disclaimer. // // * Redistribution's in binary form must reproduce the above copyright notice, // this list of conditions and the following disclaimer in the documentation // and/or other materials provided with the distribution. // // * The name of the copyright holders may not be used to endorse or promote products // derived from this software without specific prior written permission. // // This software is provided by the copyright holders and contributors "as is" and // any express or implied warranties, including, but not limited to, the implied // warranties of merchantability and fitness for a particular purpose are disclaimed. // In no event shall the Intel Corporation or contributors be liable for any direct, // indirect, incidental, special, exemplary, or consequential damages // (including, but not limited to, procurement of substitute goods or services; // loss of use, data, or profits; or business interruption) however caused // and on any theory of liability, whether in contract, strict liability, // or tort (including negligence or otherwise) arising in any way out of // the use of this software, even if advised of the possibility of such damage. // //M*/ #include "precomp.hpp" #include "grfmt_gdcm.hpp" #ifdef HAVE_GDCM #include namespace cv { /************************ DICOM decoder *****************************/ DICOMDecoder::DICOMDecoder() { /// DICOM preable is 128 bytes (can have any vale, defaults to x00) + 4 bytes magic number (DICM) m_signature = ""; for(int iSize=0; iSize<128; iSize++) { m_signature = m_signature + "\xFF"; } m_signature = m_signature + "\x44\x49\x43\x4D"; m_buf_supported = false; } DICOMDecoder::~DICOMDecoder() { } bool DICOMDecoder::checkSignature( const String& signature ) const { size_t len = signatureLength(); bool bOK = signature.size() >= len; for(int iIndex = 128; iIndex < len; iIndex++) { if(signature[iIndex] == m_signature[iIndex]) { continue; } else { bOK = false; break; } } return(bOK); } void DICOMDecoder::close() { } ImageDecoder DICOMDecoder::newDecoder() const { return makePtr(); } bool DICOMDecoder::readHeader() { gdcm::ImageReader csImageReader; csImageReader.SetFileName(m_filename.c_str()); if(!csImageReader.Read()) { return(false); } bool bOK = true; const gdcm::Image &csImage = csImageReader.GetImage(); if( ( csImage.GetPhotometricInterpretation() == gdcm::PhotometricInterpretation::MONOCHROME1 ) || ( csImage.GetPhotometricInterpretation() == gdcm::PhotometricInterpretation::MONOCHROME2 ) ) { gdcm::PixelFormat ePixelFormat = csImage.GetPixelFormat(); if( ePixelFormat == gdcm::PixelFormat::INT8) { m_type = CV_8SC1; } else if( ePixelFormat == gdcm::PixelFormat::UINT8) { m_type = CV_8UC1; } else if( ePixelFormat == gdcm::PixelFormat::INT16) { m_type = CV_16SC1; } else if( ePixelFormat == gdcm::PixelFormat::UINT16) { m_type = CV_16UC1; } else if( ePixelFormat == gdcm::PixelFormat::INT32) { m_type = CV_32SC1; } else if( ePixelFormat == gdcm::PixelFormat::FLOAT32) { m_type = CV_32FC1; } else if( ePixelFormat == gdcm::PixelFormat::FLOAT64) { m_type = CV_64FC1; } else if( ePixelFormat == gdcm::PixelFormat::INT12) { bOK = false; } else if( ePixelFormat == gdcm::PixelFormat::UINT12) { bOK = false; } else if( ePixelFormat == gdcm::PixelFormat::UINT32) { bOK = false; } else if( ePixelFormat == gdcm::PixelFormat::SINGLEBIT) { bOK = false; } else { bOK = false; } } else if( csImage.GetPhotometricInterpretation() == gdcm::PhotometricInterpretation::RGB ) { gdcm::PixelFormat ePixelFormat = csImage.GetPixelFormat(); if( ePixelFormat == gdcm::PixelFormat::UINT8) { m_type = CV_8UC3; } else { bOK = false; } } else { bOK = false; } if(bOK) { const unsigned int *piDimension = csImage.GetDimensions(); m_width = piDimension[0]; m_height = piDimension[1]; if( ( m_width <=0 ) || ( m_height <=0 ) ) { bOK = false; } } return(bOK); } bool DICOMDecoder::readData( Mat& csImage ) { csImage.create(m_width,m_height,m_type); gdcm::ImageReader csImageReader; csImageReader.SetFileName(m_filename.c_str()); if(!csImageReader.Read()) { return(false); } bool bOK = true; const gdcm::Image &csGDCMImage = csImageReader.GetImage(); bOK = csGDCMImage.GetBuffer((char*)csImage.ptr()); return(bOK); } } #endif